NONHSAT018975
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018975 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2178 nt |
Genomic location |
chr11+:44109794..44111971 |
Exon number |
1 |
Exons |
44109794..44111971 |
Genome context |
|
Sequence |
000001 aggcaggaga atcacttgaa cccaggaggc ggaggttgca gtgaaccggg attgcgccac tgcattccag cctgggtgac 000080
000081 agagcaagtc tctgtctaaa aaaaaaaaaa agaaaagaaa aaGGAAGCAT CTCATTGTAG TCTACATttt cttctgttct 000160 000161 ggtacaaaaa ccatgtaaca tttaccattt taaccatttt taagtgtacg cttcagtaat gttaagtacg ttcccattgt 000240 000241 ggttaaacag atctccagga gtttttcgtc ctgcaaaact gaatctctac accagttaaa ccactcttcc tgcacgcttc 000320 000321 ctctcagctc ttggtaacca ctattctacc ttttgtttct atgaatatga ctaaacctcc tgtaagtgga gtcacacaat 000400 000401 attggtcctt ctgtgaatag cttatttcac ttcacataat gtccttatgg ctcattcata tcatagcatt tgataggcta 000480 000481 tctttccttg ttaaggctga ataatattcc attatatgtc tataccatat tttgtttatc attcacctat ccatggtcat 000560 000561 tacgttgcta tctccttttg gcttttgtga atagtgctgc tgacagagca ggagcatcgc catcttggac aagcacagtc 000640 000641 attttaacgt tcacattgat caaaaactgc ccaaatccaa aatgtgtctc tctaatggct aagatcagca tgaccataaa 000720 000721 ctacaaattg catttctgac cagaaacatt ccaaacccct ccctttctag agacatgcca gccccgagat aacctcctct 000800 000801 ccagcaggag agatgtcagc cccaaggtca cctcccctct gaccagagac attccaaccc cgccataaac ttctccctta 000880 000881 cacagaaaca ttccaagcct gtcataagct gtctctccct gaacccttaa ataatcttag tctgtgagag aacatgctcc 000960 000961 tgaccgaaat cagccagaag cccctctcag gtttattctt caaaataaac ctgtctttga ctattgagcc acttttcatg 001040 001041 tttctttcct ctttctttaa ctcatatact gctatgaaca tgggtgtgta gctatctctt gaagaccctg ctttcaatgc 001120 001121 ttttgggtat atatccagaa ctggaatcgt cgggtcatat ggtcattcta ttcttaattc tttaaggaac catcatactg 001200 001201 ttttccattg cagttgcact attttacagt cctgccaaca gtgcacaggg gttccagttt ctccatgttc tcactagcac 001280 001281 atgtttctgt ttgttgttgt tgttgttgtt gttgttgttt taagatgggg tcttgctctg ttgcccaggc tggagtgcag 001360 001361 tggcatgatc ttggctcacc gcaacctctg catcccaggc tcaagagatt ctccagcctc agcctcccaa gtagctggga 001440 001441 ttacaggcac gcatcaccat acctggctaa tttttgtatt ttagtagaga tgaggtttca ccatgttggc taggctagtc 001520 001521 ttgaactgtt gacctcaagt gatttgccca cctcagcctc ccaaactgct ggaattacct cactggcctt atattttttt 001600 001601 ttgatagcta tcctaataga tatgagacag tatctcattg tggttttgat ttgcatttct ctgatagtta gtgatgttta 001680 001681 gcatcttttc atacttgttg gccatttgca tatcctcatt ggaggtatct ctattccatg tggtttgcat ttcctgctgc 001760 001761 taatgatatt gaacaggttt tcatgtgtgt gttgcccttt tatgtgtatt cttttgtgtg gtgtttaaga attttgttca 001840 001841 tttaaaaaat tgtctttttc taattgaagt gtaggagttc tttatatagc ctggaaatga gtcctttgtc agatGCCTTT 001920 001921 aaattatcaa cattcatagt taacaaagtc taaattttac cttctttatc ctctacctga acatgaaatg acctcagaac 002000 002001 attgagctct tactccttta ctttggtctc atttgatatt gttgactggt gtattagcta cacctagttt gttttttttt 002080 002081 tttgaaatgg agtcttgccc tgttgcccag gctggagtgt aatggtgcga tcttggctca ctgcaacttc cacttccagg 002160 002161 gttcaagcta ttttcctg |
Predicted Small Protein
Name | NONHSAT018975_smProtein_1280:1483 |
Length | 68 |
Molecular weight | 7339.7209 |
Aromaticity | 0.089552238806 |
Instability index | 42.6567164179 |
Isoelectric point | 9.00823974609 |
Runs | 11 |
Runs residual | 0.0208642650621 |
Runs probability | 0.0641791524144 |
Amino acid sequence | MFLFVVVVVVVVVLRWGLALLPRLECSGMILAHRNLCIPGSRDSPASASQVAGITGTHHH TWLIFVF |
Secondary structure | LEEEEEEEEEEEEELHHHHHLLLLLLLLEEHHHHLLLLLLLLLLLLLHHHHLLLLLLLLL EEEEEEE |
PRMN | HHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLL |
PiMo | i??????????????????????????????????????????????????????????? ??????? |