NONHSAT018456

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT018456

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1552 nt

Genomic location

chr11+:26067534..26069145

Exon number

2

Exons

26067534..26068322,26068383..26069145

Genome context

Sequence
000001 ATAGTACAGC CAGGGAAGCT GCCCAAGGAA CAGAAGCTGA AGCTGTAGAA TGATCATGGG CGAGAGGTTT TATTTAGAAT 000080
000081 CTGCTCATGT TTGCCTAATA AATGTAGCAG CCACAGCAAA TGAAATTCTT AAAATCTTAG TATTAACAGG TATTGATTCA 000160
000161 TTTACCATTA TTGATGAAAA TCAGGTCAGC ACAGAAGGTG GTGGATACAT TACTTTTTCC TTCAAACGAG CAGTATCACA 000240
000241 AGAACTGAGC TTGAGTTACC ATGGAATTCT TATAATTAAA GATGCCTCTA CAACCTTTGT GGAAAAGTCC AGAAAACCTT 000320
000321 CCAAACAGTG ATCTTTTGTT TTCCTGTATT TTCACCACTG TGGTTGCGAT TTGGCTTCCT GAAAGTACAT TACGATGCTT 000400
000401 CCTGATGTCC TCAGGAATTC TCAAATCCCT CTTTTAAACT TTAAGACATA TAGACCAGTT GGCCATAGAA GGATCATTTT 000480
000481 AAAAGAATAC ACAATAATAG AATTTTACCC AGATAGTGTA TTCAAGATCT GTGACTGGAT AAATTGTTTT CTGAGCTGAG 000560
000561 AGAATATTTC AGTCTTATAT TTTAGATCAT ATGTTAAAAA AACCATAGCC ATACCCCAAA GATTGTGATC ACAGCTAAAT 000640
000641 ATTTAGTACA GTAGAGTAGT AAAACAAATG GGTGAATATC TAAAATGTAT GAAGAAAAAG AGCACTTCAG AGATTTGATT 000720
000721 ATACAAAAGA TTCTAAATAG TACAAATAGG ACTTCAGAAG ATGAAAAGAA TTCTGAAGAA ACTATTAAAA ATATGAACAT 000800
000801 GGCAATAAAT ACTACTTAGA TACCAAACaa tatttaagat atatttaata ataatttCTG AATAAATATC AGCAAACAGA 000880
000881 CTTCATCCTT TGGGGTTTTG GCTTATGCCT TAAAGGAATT TGTGGCCAAG GAAGGTCAAG GAAATTTACC TATTCAAGAA 000960
000961 CAATTTCTGA CACAATTGCC AACTGGAAAA AATATATAAA TACACAAAAT ATTTACTGTG TGAAAGCAAA TTAATATGTT 001040
001041 TCCCCTGTGA ATAAATCATG CCAACAAAAT GCTGCAGTCC ATAGACCAGG TGACCAATGA CATTGCAAAG AAAGAATTAA 001120
001121 AATTACTCTG TAGCAATTCT TCATTTCTTA GAGTCTGAAG ATGTGAATCC TTTACTGAAG AATATGGTTT GGATACAATT 001200
001201 AACGGGAATA AAATCTTTTC CAGCATGGGC ACGGCAGATA ATGAAATAGT ATTGTACTTA ATATTATGGA CTAGTGATAG 001280
001281 ATTTTATATG CAACAATATA GATGTCCATG GATATCTAAC TATCAAGTTG AAGAAAATTT AGGAAAGTGA AAGTCTTGTT 001360
001361 TTACTGGTTT CCTTCAGGAA TATAGATTCT CTAGTCACAG ATTTTGTAAA AATGGAGCTG TTGAGAAACA CACTATTGAT 001440
001441 TCCTGAGAGG AGGTGCTACT CAAAAGATTA TCGAAATACT CACTAAACAA TTAGTAATTG TTAATAACAT ATTTATCTTG 001520
001521 GCATGTCACA AACTCCAGCA ACTTCTCAGT TG
[back to top]

Predicted Small Protein

Name NONHSAT018456_smProtein_281:436
Length 52
Molecular weight 5785.857
Aromaticity 0.117647058824
Instability index 85.4196078431
Isoelectric point 5.93267822266
Runs 9
Runs residual 0.0222286934576
Runs probability 0.0412863844236
Amino acid sequence MPLQPLWKSPENLPNSDLLFSCIFTTVVAIWLPESTLRCFLMSSGILKSLF
Secondary structure LLLLLLLLLLLLLLLLLLEEELEEEEEEEEELLLLHHHHHHHHLHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLL
PiMo ooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTiiiiiii