NONHSAT018318

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT018318

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1445 nt

Genomic location

chr11+:18728515..18730087

Exon number

2

Exons

18728515..18728696,18728825..18730087

Genome context

Sequence
000001 CGATTTCATT CCGAGCCACC ACTCTGAAGT AGTACTTCCT GCCTGGGAGC AGCCCCGTCA CTGTGTACTT GTTGCTGAAG 000080
000081 ACACGCTCGG CTGCCGTGTA CCAGGTGGCT GTGCTTGCAT CCCGCTTCAT GATGATGTAG TGAGCCTCAC CGTCCTCCTG 000160
000161 CACATCTGGG CTGTGGTTCC AGCCATCTGC CAAGTCCGAT GGAAGATAAG ATGGGGCAAG TCTCAGGCAG CTGGTgtctt 000240
000241 ggagtcggaa aactatttct gaagtctgct ctgccattta ctagcctcgt gacctggggt aagttactta tctgagactt 000320
000321 ctttcctcaa ttgcaaaata gagctgacaa tgactatttc gtagaaatag tgggtaaaga gactggcatg taGTTACTGT 000400
000401 TCAGTAAAAA TGAATCCATT CCTTCCTTGG GGGTTTAGAG CTTTATTTTA AAGCTTCCAG CTCTCTTTAA GCAGTCACCC 000480
000481 CAATTTTTAA TGGATTCATC TCCATTTGTC CCTCCTGCCC CTCCACCCAT TTCTACTCTC TCTGCCGACC ATACTCTGTA 000560
000561 TGATAAAGTC TTGCTCTGTG GTGTCAAAGA AATCTTCATG GCCCTAAGGC ATGACTTTCC TGTGGTAGGA ACTCAAGCGG 000640
000641 CACTGGGGAG CTGTGCTTTG GAGAGTGTAC AGGGATGGGT CTTGGAGGCC TCTGCCTTCT CTCCATACCT GCCACGCGCA 000720
000721 CATGGATGTC ATAGCGTGCT TCTCCAAACT CATTCTGAAG CAAGATTCGG TACACCCCTG AGTCAGAGCG CTTGGTGCTA 000800
000801 TTAATGAGGA ACTGGGAGTG GTTTTTGCTC TTGGTAATTG TCTCTCGGCC CTTGGTGGGA ACGCCATCTT TCTGCCAGAT 000880
000881 CACGTCAGGT GGTGGTGAGC CCTGAGTAGT GACAGGAGAT GGCACAACTG GTCACACAGA TGATATTTGG GGGCAGGCCT 000960
000961 TCCTCCATTG TCGAGGAGTT TCCTGCCAGG CTGTCGCACT AGGGGTCTGG TGAGGGGCAG AGTCAGAGTC AGAGTCAGAG 001040
001041 ACTGTGATGG CTACAATAGC CATCTTGGTT ATGTGGACAG TGTATGGAGG TCAGGGTCAG GGACAACTCA CAGAGAAGGC 001120
001121 TGCATGGATG CAGAGGGCTG TCCCAGCGCG AACCACCATG TGACTCTTCA GCCGGGCACT GAGGTCAAAC TTGGGTGCAG 001200
001201 CTGAGATGGA GGAGACAGAG GTGGAGGCAT GGATCTGtct ttcaagaaga ctctgcttta agcctcctca tcaaagcctt 001280
001281 cccaacctct cctcctttat gcccccacta caggccatac agacatctag ctgccctgca accctgtgaa gcatttattt 001360
001361 gttttctcat ctgtctcctt ctactagtac gcaagaccct ggaaggcaag tccttgtgtc ttgtttctat aaccctaaca 001440
001441 cctcc
[back to top]

Predicted Small Protein

Name NONHSAT018318_smProtein_1205:1348
Length 48
Molecular weight 5289.1149
Aromaticity 0.063829787234
Instability index 97.6574468085
Isoelectric point 5.54827880859
Runs 6
Runs residual 0.0386170212766
Runs probability 0.0378466701996
Amino acid sequence MEETEVEAWICLSRRLCFKPPHQSLPNLSSFMPPLQAIQTSSCPATL
Secondary structure LLLLHHHHHHHHHHHLLLLLLLLLLLLLLLLLLHHHHEELLLLLLLL
PRMN -
PiMo -