NONHSAT018198
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018198 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1749 nt |
Genomic location |
chr11+:17042246..17050044 |
Exon number |
2 |
Exons |
17042246..17043656,17049707..17050044 |
Genome context |
|
Sequence |
000001 gccttggtct cccaaagtgc tgggattaca ggcatgagcc actgcgcctg gccaaaatta atttttaaaa agatgagaaa 000080
000081 gaaaaacaaa ccaattggta gtccactcag tatgaatcat gagatcaact tgttctctga cctgcttctt catagttatt 000160 000161 tggtgtctat tgttctggaa tcacatagac cctggactgt agaccctgga atcacataga ccctggacta taatgtttat 000240 000241 agacaactta aacattataa aatgttaagt ttttcctttg aaatagtact tcaggtccta catactaata aaactactga 000320 000321 ctctactggt ctgaaggacc ccatgaagag ctgactcacc aaagaatgca gtttccacat cctgagcttt tcatcccccc 000400 000401 cgtgcccaac cagtcaatgt cttcagtttt ccagcccctc accctccaca atccccttaa aagctccagc ccaaaactcc 000480 000481 acaaaaaaat aaatttgagg gtctcctcct gtctcctcac ttgtcaccct gcaatcatta aactcgttct ccactacatc 000560 000561 cctgctgtct cagtgtaatt gttctattac tacacaacag acataCTACA CAACACACAT ACTACACAAC AGACATACAT 000640 000641 ACACAACATT TGGTCCTAAA GCGGTAGGGA GCAGGCAGCA TCCATACAAG ACGTTCACAG GTCCCAGAGC AGTGAAAGGA 000720 000721 CCCCACAAGG TCAGCTAAGG TTTCTTCATC TCTCACCCTT GTTCCCACCA CCATGCTATT CTCTGTGCCT CTGACGTAAT 000800 000801 CACCCTCTGC CTTTATATTT TCATTTAAAA ACTTTCTCTT AAGCATCTAC TTTGTGTCAG TCCCGTAGTA GGAGACAATG 000880 000881 TAAGCAAAGA GAGATAGCAG GAAAATAAAC CAttagagtt ctccagagaa cagaaccaat tgagagattt attataagga 000960 000961 attcactcac gtgattctgg aagccgatac gatctgcagt aggcacgcta gagacccagc agagccaatg gtgcaattcc 001040 001041 taccctcagg ccaggaaaaa aacctcacat cccagcttgc aggcagtcag gcaggaggaa ttccctttta tttgggaaag 001120 001121 ggtcagcctt tcattctatt cagactttca gctgatcggt gggcccccca acatgcgcgc atcagagaga tcaatctgct 001200 001201 ttacttagtc tcttgattta aatgttaaac tcggccatgt gagcgcggtg gctcatgcct gtaatgctag cactttggga 001280 001281 agtggaagca ggtggatggc ttgtgctcag gagttcaagg ccagcctggg caatgtggca aaaccctgtc tccacaaaaa 001360 001361 caaaacaaaa caaaaaaatt agctgggcgt ggtggcatgt acctgtagtc cgtgacagag caaaactcca cctcaaaaaa 001440 001441 acaaacaaaa caaaacaaaa acagaaattg gagaccagcc tgggcaacac aacaagatcc tttctctaca gaaatgtttt 001520 001521 aaaaatagcc aagtgtagag acacgcctct gtagcttctc aggaggatga gatggaagga tcgcttgagc ccagaagttt 001600 001601 gaggctgcag tgagctatga ttacgctact gcactacagc ccaagtgaca gagtgacacc ccatctctaa aaacaaccat 001680 001681 gaaataaaat aacaaCAGCA ATAATAATAA TAATGCTTTT TCAAAAAGGA GGAAAGGGAA AGttttttt |
Predicted Small Protein
Name | NONHSAT018198_smProtein_365:577 |
Length | 71 |
Molecular weight | 7821.3021 |
Aromaticity | 0.0571428571429 |
Instability index | 77.9442857143 |
Isoelectric point | 9.78656005859 |
Runs | 7 |
Runs residual | 0.0448373408769 |
Runs probability | 0.042281777576 |
Amino acid sequence | MQFPHPELFIPPVPNQSMSSVFQPLTLHNPLKSSSPKLHKKINLRVSSCLLTCHPAIIKL VLHYIPAVSV |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHLLEEELLLLLLLLHHHHHH HHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHH HHHHHHHLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTT TTTTTTTooo |