NONHSAT018049
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018049 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
965 nt |
Genomic location |
chr11-:12295968..12303455 |
Exon number |
2 |
Exons |
12295968..12296625,12303178..12303455 |
Genome context |
|
Sequence |
000001 ATAAATCAGA CGATTTGGTC CCAAATTGTT GACTGAATCA AAACACTCAG TTCCAGGTCA ACTTTGTATT AAACACAAGC 000080
000081 TGGGCTGCTA AAGACAGCTA CCTCTTAGTA AGCCAGAGCT TGGGCAGTGG TGGCTGGAGG GTGGCACCAG CACTGGCTGA 000160 000161 GACTTCGGGA GACCACTCAG CCTGTTTGCT CACCTGTGAA ACAGGCTTCG CACTAGTTAC CCCACAGGGT CATCCTGGGA 000240 000241 TGACCACACG TATGGGAAAA GTCCTGGCCC ATTACAGGCC ATCGGCAAAT CCTGGTGGGT CTGCCTTCAA AACACGTCGG 000320 000321 GAATCCAGAC CCCTCTCACC GCCTCTCTGC TTCCCACTCC TGGTCCAGCC ACCATTGTCT TTTGCTTGGA TCATAGAAAC 000400 000401 TGCCTCTGCC TGGCCTCCGT CCCTGCCTCT TGCTGTGCCC CACCCCCACA GTCTATTCTC AACACAGCAG CCAGGGTGAC 000480 000481 TCAGTTAAAA CCTGAGTGAG ATCATGCCAC TCCTCTGCTT AAAATCCCCC AGTGGCCCCT CATTTACTCA GGGTGAAAGC 000560 000561 TGAAGGCCCT ACCGAGGCCT GCAAAGTCCA AGATAACGTA GTCCCCAGTG CGTCCCGTGA CCTTGTCTCC TAGCACTGGC 000640 000641 CCCAGGCTTG CCCTGTCCTC ACCATGGCAC CTCCGTGATG CTCCTCCAGC ACTCTGGGCA CACGTCCTTC TCAGACCCCT 000720 000721 TGCACTGCTC TTGCTTCTGC CTGGAAGGTG TTATCCCCAG ACGTTTCCAT GCAGGCCTCA TTCACTCACT GGCTGTCTTC 000800 000801 AAGTCCTTGG TGGAACGTCA CCTGCCCTGA CCATCCTATT TAATATTGCA GCCCATGCCT CAGTGCTCTC CATTCCCCTT 000880 000881 GATTTTCATT CATAGTGTGT CTCACCCTCC AATAAACTAT ACAATTTCCT TTTTTCAAAA AAAAAAAAAA AAAAAAAAAA 000960 000961 AAAAA |
Predicted Small Protein
Name | NONHSAT018049_smProtein_239:478 |
Length | 80 |
Molecular weight | 8629.9527 |
Aromaticity | 0.0886075949367 |
Instability index | 62.6265822785 |
Isoelectric point | 10.8867797852 |
Runs | 5 |
Runs residual | 0.0769897693775 |
Runs probability | 0.0511747041158 |
Amino acid sequence | MTTRMGKVLAHYRPSANPGGSAFKTRRESRPLSPPLCFPLLVQPPLSFAWIIETASAWPP SLPLAVPHPHSLFSTQQPG |
Secondary structure | LLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHLLLLL LLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooo ooooooooooooooooooo |