NONHSAT017797

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT017797

Source

NONCODE4.0

Same with

,

Classification

sense

Length

7463 nt

Genomic location

chr11-:7686336..7694686

Exon number

3

Exons

7686336..7689044,7689709..7693754,7693979..7694686

Genome context

Sequence
000001 GGCTTGAGTT GGGAGAGGAG CAGGGCGGCC TTGTAGGGTA GGGACAGATG CGGGGAGGCT CCCGAGTCTC TGGCAGTTGA 000080
000081 GTGCCCAGGC CCCCTTCGCC CTGTCCAGGA GACTGTTGGG GAGTCCCCAG GCCCTAAGTC ACGGGGCACC TCTTAGAGCT 000160
000161 ACGCACCCTA GTTCTGTCTT TAGGGACTGG GCCCCTCATT CCGGATTGTG TGTTAGGGGT GATGTCCTCC CCCTTCACCT 000240
000241 CAAGGAAGGG ACTTCCAGTG TATGAACCTT TGGCTGTAGC CAGGAGGGGC CTAGTGACCT GAGCACCCCA GGCCATGTGT 000320
000321 GCTGCCTGCT CCAGGGGCCT GAAACATCCT TCCTGTGTGA CCTGCAGCTG ACCCCTCCCT ACCCTCTGGT CCACGACAGG 000400
000401 CTCTCCCAGC CGCCTTCTGT GTCACTACTG TTCTCTTTGC CTATTTCCTG CAGGCAGAGC TCAGCTCCTG TGCCTTTGGT 000480
000481 GTGGGGAGGG TGTTCTGCGC CTGAGAGCTG CCCTGTCCAG GGCGGGCAAG ACCTGAGGTG CTCTGTTCAC ATTGTGTCTG 000560
000561 CCAGGACCCG TCCCTGCTCC TGACCATCAC CGTCACTGGG GTCACTGTGC TCGTGTTGGT CCTGAAGAGC ATGAACTCCA 000640
000641 GGAGGAGAGA GCCAATCACC TTACAGGACC CTGAAGCCAA GTACCCGCTG CCCTTGATTG AGAAAGAGAA AATCAGCCAC 000720
000721 AACACCCGGA GGTTCCGCTT TGGACTGCCT TCGCCGGACC ATGTCTTAGG GCTTCCTGTA GGTGAGCCGG GCTTGGGTCA 000800
000801 TCACCAGGAC TGGGGCCTCT GGGGGCTAGG CCCTCCTCTC TTAACAGAAA CACAGGTTTC CCACGTCCTG AGGTGTGGAA 000880
000881 GATGCCCTCT TGCTCCTCCT GAGCCTGTGA GCTCAGGGAG ATAGATAGGG GGATGGATGT GGGACAGAAA ATTTCTTTTC 000960
000961 TTCATTATTC CAATTGGGCT GACACGAGAG TGGTACCTCA GTGAgcattg aaaagaactg aacctagagc caaaaggcct 001040
001041 aaaatctcat ggaaggctcc ttgctgggga acttaaggga agtccttcaa tctctctgag cctcagtcta tgaaatggga 001120
001121 tttcccaggc ctgcctgtct acctcacttg ggttgttgtg aaagtagagt gactgatgga tatgaaaatt cagaaactac 001200
001201 aaagtattgt gcacctggga gggatGGGAG GAACCAGTGG TCGGGGAAAG GCCCAGAATG TGCGGGTAGG CAGGAATGAG 001280
001281 TCAGGTGTGC CCTGCCCCCA AGGTCACTTA GATTCTCTGC AGGGGCCTCA GACCCACATA AGGAGGGACC AGCCCTACGA 001360
001361 GTTGCAGATT CCAGCCCTAG GAGTCCTAGA GTTGAGTTAT CCCATTTCTA ATCTGTAACA CCACTAGATA GCTGAGTCAG 001440
001441 TCTTAGTGCA GTAGAAAACT GCTAGAATCA GGGATTCAGA GCAGCTTTGT ATAATCTGCT AGTGCTGCTT GCCTGCCTGG 001520
001521 TGGATCCTAC TCCGTGGCCT ATTTGTCTTA TATGCACAGG CCAAAACCTT GACCTCAGCT CTATCAGGTG GTGAGATTAC 001600
001601 ACTCTAGCCA GCTCGCTGGG CCCCTGAGCC TCCTTGCTGT TCCCTCACTC CATCTCTATG CACGAGAGCT CAGTGTTGTG 001680
001681 CGTGCCGTCT CTCAGCTCCC TGCTCGGCCT GTCAGGCAGG TCCTGTTGGC AGGAAGCCTA AAAGAATGAA AAACTTTGAG 001760
001761 ATAGAGAATT GCTTAGAAAC TGCCTTGACC CACTATCTCC TCAGCCTTGG CCTAGGCCGT GCAAAGTTAG TGGGACAAGG 001840
001841 TAATGTAGAG GCCTCTGGGA GAGTCTAATA TGAGGCCTCA GAGTTCGCTG CTTCGTCCCA GCCCAGTGGA AGTGAAGCAA 001920
001921 GTTAGAGATG GGGCTTGAAG GACCAGCCAG GGAGCCCCAT TTGCCCTGGG GACACCCTCA GGCCAGGCCT AGGTGGCTGC 002000
002001 ATATGAAAGA GCCTTTCCAG GTTTCCAGTT TCAGGTTCTC AGAAGGAAGC TAGGTGTCTC ACTTACTCCT GGCTATCCCT 002080
002081 GGTGCCCAGA GGGACCATGA CCAGAGTCAT TGAGCCTGTT CTGAGCCCAG AGTGTTGGCA CCTCAAAGAC TTGGCTCATC 002160
002161 CCCTTGAATC AGCTTCAGGG ACCAGCCCCT CTAGTGCCTA CTCTGCCTGC TTTTTTCTCC TCCTGCCTCC TCCTCCTCCC 002240
002241 TGCACCTTAG GTCTTGGTTT CTATCCATCT CTCTGTTCCA TCTTCCTTGT CTCGACTAAT TTCCCGTatg tagtccactc 002320
002321 agtttctgag cgagtagaaa ctgagggagt aaactgacta catacataca ggaagttagt caagggttag ggttacaaaa 002400
002401 ctttctcttg cctctagctc ttagtatctc tTGATTGCAC TCCTGTCCCT GCCACTAATT GCCTTAGTAA TTTGAGTCTC 002480
002481 ACATTTTGGA TCCAACAGGT CGTAGCTGCC CAGTGTGTCA TCTGACAGTG GGATGTAGTC ATGATCCATA GGTCTCTGGC 002560
002561 CACACCTGGT TTATTGAATT CTACCCAGGA AGGGCAGAGT TACATGGTTA AAAACTTCAC TGCTACTCCT CACAAGGCCA 002640
002641 TAGGCCAGGA AGACATGATA TTGTTGTTTC ATTTGCTCCA TGGGTACCCA AATCCTAGGG CCCTGTAGTA TCTGTGAGCC 002720
002721 CAGGCCTGCT CTGTGCCTAG TACCAGGATA CAGATGGAGT AGTTGTAATT TATTCACAGA TCTCAGTGAT ACATCCAGTT 002800
002801 TAGGAAGAAA GGAGTTTGTG AAGGCCACAT ATTTTTCTTG AATAGACAAA TATTCCTTTC TAAttttttt tttttttttg 002880
002881 agacagggtc tcattctgtc gtccaggctg gaatgcagtg gcacagtctc agctcactgc agcctcgacc tcctgggctc 002960
002961 aggtgatgct cccacctcag cctcccaagt agctgagact gtgggtgtgc accaccacac ctggctaatt ttttgtattt 003040
003041 ttttgtagag atggggtttc gccatcttgc ccaggctggt ctcgaactcc tgagctcaag caatccaccc gcctctgggc 003120
003121 tgggattaca ggcgtgagct accatgtctg accCCTTTCT GTAATTTTTA ATACTCACTC TCCAACTTTA ATGATCTTTT 003200
003201 CCTGCTCCAA AAAGCAGTTA CACTAAGATC ACAGGTgggc agacatatca cccccatttt acagatgaag agaccaaaac 003280
003281 ccagagaggt gaagtgactt gcctagggta gcacagggag gcagggcagg cctaggatcc gggcatccca tatttgggtt 003360
003361 ccttccctgc tctcttcttc ccacccctct TAACATTGTG CCCCCAGTAT TTGCTCCCTT CACTGAAGCT CAGTCCTTTA 003440
003441 TTCCTGGGCC TTATTTAAGC TAAATATGCT TTGACTCAGT GCTTGATGCC TTTTCTATAG GTAACTATGT CCAGCTCTTG 003520
003521 GCAAAAATCG ATAATGAATT GGTGGTCAGG GCTTACACCC CTGTCTCCAG TGATGATGAC AGAGGCTTTG TGGACCTAAT 003600
003601 TATAAAGGTA AATAGTGCCC ACCATATCTG GCTAGCTCGT GCTTCCAAGC CTACTGAGGG TGGTGGGGTG GAGGGGCAGT 003680
003681 GCTTTTTCTC TGAGGGCACA TATGCCCTAG GCAGGGCTTT CCAGCAGTGA AGCTACAGTT AACCTTGTGG CAGCTTCATC 003760
003761 TTCAGGGATT GCGTACAACA ATTCAGAGAG GAGAACACTT TCTCTGCAAA GCTTCCAGCA GTAAATGCAT TTTCTAGTTG 003840
003841 TACGTGGCTG TGGCATTGTG TCTGGGAATG TGAAAGCAGT GCTGCCTTGC TTTTCAGATC TACTTCAAAA ATGTACACCC 003920
003921 CCAATATCCT GAAGGTGGGA AGATGACTCA GTATTTGGAG AACATGAAAA TCGGGGAGAC CATCTTTTTT CGAGGGCCAA 004000
004001 GGGGACGCTT GTTTTACCAT GGGCCAGGTA CTGGAGGGGT TAATACTTGG GCTCCCAGCT GGGAGGAAGA TTCCTGCAAT 004080
004081 GGTTCCATTG TTCTCGTACA CTCCTCAGAT TTGAGTCACA TGGGGTTGTC CTTAGTCTTC ATTCATTCAC ACACAATGCA 004160
004161 TAATGATCAC ACTTGTTACA CATTCACACA CCCACTTCAT GAGGTTGTCA GCTTTTGTAA GGTAGGGGAA TGACTTGGTG 004240
004241 TTTCCTCGTC ATTGTATCAA AATCTCCAGC ACAATGCCTG ATACATAAAT GGTGCCTGCT AATACTGAAA AATGGATGGA 004320
004321 GGGAGTCCAT GCTCCTTGGT TACTCACATA GCCATTGTTT ACTCACTGGT TCACCTCCGT GAGTGAGAAT GCTCTTTGAG 004400
004401 TCTCTGTGTT AACTTCAGCT TGCCCCTCTT TTTCCTCAGA ACAGAAGGCC CGGCGATTCC CCGACCAAGC CCAGGCTCTA 004480
004481 TTCCCACTTT GTGCACTGGA GCACCAGGGC TAGCTGAGGA GACTGCCCTG GCCTGCTTCT CCAGCTTAAA ATGGTGCAGA 004560
004561 CAGTCCCTTA GCTGGACGTG CCTCCTGGGA GTCCTAAGGA ATGTCAGTGA TCTTTTGCAG TCTCTTTAGG CAAGAACTGC 004640
004641 AGAGGTCATA AGCATTCTCT GTGTTTCCAG GGAATCTTGG AATCAGACCA GACCAGACGA GTGAGCCTAA AAAAACACTG 004720
004721 GCCGATCACC TGGGAATGAT TGCTGGGGGC ACAGGCATCA CACCCATGTT GCAGCTCATT CGCCACATCA CCAAGGACCC 004800
004801 CAGTGACAGG ACCAGGATGT CCCTCATCTT TGCCAACCAG GTCAGTTCCT GCTGAGCTTG CAGTGGTAGG ATGGAATGTT 004880
004881 TGCTGAGCTG GGCTCTTGTT TTCATTTCTC CTGCATTGAC TGAGCTCATG CTGCTTGGGT GCCTGCATCT GTGGGAGGGC 004960
004961 TTAGTGGGAT CAACAGGGCT GCTGGCAGCT GGAGAAGCTG AGTCCAGGCC TGCTTTTTGC ATGTATTTAA CTCTTTTGTG 005040
005041 TCTCCTCAGC CAGCCCTAAG CACTAAGCAT TCCTTTTTTC CTTAAGATGT ACTGCTGTAT TTTTGCTAAG TGTAAAATCA 005120
005121 CAGATGTCCT CAGTGGACAC TTCAGAaaat acagaatata aatatttact tactttttaa atcttttttc tatatatgtt 005200
005201 atatatttgt aatttatata tgcttttttt ttttcactca gcattaccac aacaggcatt ttcttctctt taagatgctt 005280
005281 tataaatatt ttcatcatag tttttatcaa gttgcactat aatttactaa cttccacatt caggctgttt tcagttctaa 005360
005361 ataatatggt gatgaataat tgtgcctacg cttgattact tttagattat tttctaaaac agaatcccag aagtggaatg 005440
005441 actgggatga gaatcatgag gagttttaag ATCCAGGTCT TCTGTGCAGT TATCTTTGAG GCTGTGACAG GTTATTTTTG 005520
005521 GCTTTGGTTC CCTTTCCCCC AAATGGGGCT CCAGACTGTT TTCCTCTCCT TCACATATCC AGTGCTGTTC TATCACAGGA 005600
005601 CTTTCTGAGC CCATTACATT TCTTCCAGAA GATCCTGGGC CTGCACTGAG CTTGTTCCAG TTAGGTTTGC TGTGCTAGAG 005680
005681 CTCAGTGTAG ATGTAGGAGG CAGGGCTGGA GCTCCGAGTG AAGCCATCCT GGCCAGCGCT TGGCTAAGGT CCTTCTAGTT 005760
005761 GGAGGCGGTC ACTGCAGCTC CATGGGAACC TACATCCCAT GGAGGTTCTT CATCCACATG GAGGAACTTC ATCCACAAAA 005840
005841 CAAAGGGTTT GAGCTTCAGG AGCAGCAGCA GAACTCTTGT TTGCCGTGGG AGTTGGCAGC GAGCACTCCA GCTGGAGTGG 005920
005921 TGGCAGCTTT GGCCAGGAGT ATGCTGACCG GTGTAGTCAG TCCAGGGAAC AAGAGGATGG CCCTGGAGGG GCTTTTTCAG 006000
006001 TGTTGCTTCT TTTCTAGACA GAGGAGGATA TCTTGGTCAG AAAAGAGCTT GAAGAAATTG CCAGGACTCA CCCAGACCAG 006080
006081 TTCAACCTGT GGTACACCCT GGACAGGCCT CCCATTGGTA CGACATCCAT TGCCCTCACT CACCATGGGT CAGCACCAAC 006160
006161 CCTTGACCAC TTTGAGGACT GGTCTCTGTC TCTTTGTTTT GTTTTAGTTT TGTAGGACCA GATGTGGGGG TTAAGCCTGG 006240
006241 GGCTCTGGCT CCAGATGGGA AATGTGAGAA ATTGAGGGAG AAAGGATTTG GGATGGCCTG CTTTTAAGGG CAATCGAGAG 006320
006321 CAGGTGTCTA ATACATCAGC AGCACCTCAC GCTGCACTGA ACATCAAAAG GGACACTGCC CCTGTCCACT GTGAACACCC 006400
006401 ACCCATTCCA CACAGCCATC ACATACACAT CTAATATGGG CACTGACCCC TTCACCACTC ACCCTTCTGC TTACGGCCAC 006480
006481 CACACCCCTT ACCGCCCACC TCACCTGGAC ATGCTGAGCC CCCAGACAGC TGCTGCAGCC CAGACAGCAT CCCAGCAACC 006560
006561 ACTGTGCACA GAGCACCCCA CAGGCGCGCC TCTCACACTG CTCCCGGCTG TACCTGCTTG TCATACAGGT CCCTGGTCGG 006640
006641 CAGAGGGCGC TACCCTACTG AGCAATTCTG CGCAGTTCCA CTAACACCAG GCCACACCCT GCCGGACAAC TCCAGCTGGC 006720
006721 TGTACTGATT CACACACCTC GGTATACCTC GTTGTGTTCT CCTTCCTCGT CAATGCTGAC AGCTGACAGA CAGCAGCAGG 006800
006801 GCTTCAGGGT CCCTGCAGTG AGCCTGGGAC CTGGGGTGAT TGCTGCAGAG GGCTGTTTAC TAGTTCTGAG GCTTTTTGCA 006880
006881 GGGAGCAGTA GTACAGACTT CTAAGCCTTT GTAGAGCAGC TTGTCACCTC CTCCCTGGCT GAGGGTGGGT GTGCAGGCGG 006960
006961 CCTGGGATCA GGAACTCCAC CTGGCATCGC TCAGCTTGCT CCTGCATCTC CTTCATTTCA GGCTGGAAGT ACAGCTCAGG 007040
007041 CTTCGTTACT GCCGACATGA TCAAGGAGCA CCTTCCTCCT CCAGCGAAGT CCACGCTCAT CCTGGTGTGT GGCCCGCCAC 007120
007121 CACTAATCCA GACGGCGGCT CACCCTAACC TGGAGAAGCT GGGTTATACC CAGGACATGA TTTTCACCTA CTAACACCTC 007200
007201 CACGTGCTCA GCAATTTTGC ATGTCCCTTT TCATCTGTTT CAGAGTAAGT TCAATTTCAC CACGGTAAAC TGGGATGTTT 007280
007281 TCAAAAGTGC CTTGCCATGT ACCTTCGCGC ACACACTGGT TCTCCTCTTT TGGGTGTGGG CCTAACAAAA AGGGCTCAAG 007360
007361 GGGCTGGAGA CTGGCTGCTG GGGCCTCCTT GCTTGGAGGC TGGAAAGAGC TCCATTTCAG TATCTTTCTC CGTGGTTTTG 007440
007441 TGAAATAAAC TCAAGTACAA AGC
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Predicted Small Protein

Name NONHSAT017797_smProtein_2096:2356
Length 87
Molecular weight 9338.6475
Aromaticity 0.104651162791
Instability index 75.3245348837
Isoelectric point 5.04974365234
Runs 12
Runs residual 8.67754251998e-05
Runs probability 0.055069775658
Amino acid sequence MTRVIEPVLSPECWHLKDLAHPLESASGTSPSSAYSACFFLLLPPPPPCTLGLGFYPSLC
SIFLVSTNFPYVVHSVSERVETEGVN
Secondary structure LEEEEELLLLLLLHHHHHHLLLLLLLLLLLLLHHHHHHEEEELLLLLLLLLLLLLLLLEE
EEEEEELLLLEEEEEEEEEEEEELLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHH
HHHHHHHHHLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTT
TTTTTTTTTiiiiiiiiiiiiiiiii