NONHSAT017797
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017797 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
7463 nt |
Genomic location |
chr11-:7686336..7694686 |
Exon number |
3 |
Exons |
7686336..7689044,7689709..7693754,7693979..7694686 |
Genome context |
|
Sequence |
000001 GGCTTGAGTT GGGAGAGGAG CAGGGCGGCC TTGTAGGGTA GGGACAGATG CGGGGAGGCT CCCGAGTCTC TGGCAGTTGA 000080
000081 GTGCCCAGGC CCCCTTCGCC CTGTCCAGGA GACTGTTGGG GAGTCCCCAG GCCCTAAGTC ACGGGGCACC TCTTAGAGCT 000160 000161 ACGCACCCTA GTTCTGTCTT TAGGGACTGG GCCCCTCATT CCGGATTGTG TGTTAGGGGT GATGTCCTCC CCCTTCACCT 000240 000241 CAAGGAAGGG ACTTCCAGTG TATGAACCTT TGGCTGTAGC CAGGAGGGGC CTAGTGACCT GAGCACCCCA GGCCATGTGT 000320 000321 GCTGCCTGCT CCAGGGGCCT GAAACATCCT TCCTGTGTGA CCTGCAGCTG ACCCCTCCCT ACCCTCTGGT CCACGACAGG 000400 000401 CTCTCCCAGC CGCCTTCTGT GTCACTACTG TTCTCTTTGC CTATTTCCTG CAGGCAGAGC TCAGCTCCTG TGCCTTTGGT 000480 000481 GTGGGGAGGG TGTTCTGCGC CTGAGAGCTG CCCTGTCCAG GGCGGGCAAG ACCTGAGGTG CTCTGTTCAC ATTGTGTCTG 000560 000561 CCAGGACCCG TCCCTGCTCC TGACCATCAC CGTCACTGGG GTCACTGTGC TCGTGTTGGT CCTGAAGAGC ATGAACTCCA 000640 000641 GGAGGAGAGA GCCAATCACC TTACAGGACC CTGAAGCCAA GTACCCGCTG CCCTTGATTG AGAAAGAGAA AATCAGCCAC 000720 000721 AACACCCGGA GGTTCCGCTT TGGACTGCCT TCGCCGGACC ATGTCTTAGG GCTTCCTGTA GGTGAGCCGG GCTTGGGTCA 000800 000801 TCACCAGGAC TGGGGCCTCT GGGGGCTAGG CCCTCCTCTC TTAACAGAAA CACAGGTTTC CCACGTCCTG AGGTGTGGAA 000880 000881 GATGCCCTCT TGCTCCTCCT GAGCCTGTGA GCTCAGGGAG ATAGATAGGG GGATGGATGT GGGACAGAAA ATTTCTTTTC 000960 000961 TTCATTATTC CAATTGGGCT GACACGAGAG TGGTACCTCA GTGAgcattg aaaagaactg aacctagagc caaaaggcct 001040 001041 aaaatctcat ggaaggctcc ttgctgggga acttaaggga agtccttcaa tctctctgag cctcagtcta tgaaatggga 001120 001121 tttcccaggc ctgcctgtct acctcacttg ggttgttgtg aaagtagagt gactgatgga tatgaaaatt cagaaactac 001200 001201 aaagtattgt gcacctggga gggatGGGAG GAACCAGTGG TCGGGGAAAG GCCCAGAATG TGCGGGTAGG CAGGAATGAG 001280 001281 TCAGGTGTGC CCTGCCCCCA AGGTCACTTA GATTCTCTGC AGGGGCCTCA GACCCACATA AGGAGGGACC AGCCCTACGA 001360 001361 GTTGCAGATT CCAGCCCTAG GAGTCCTAGA GTTGAGTTAT CCCATTTCTA ATCTGTAACA CCACTAGATA GCTGAGTCAG 001440 001441 TCTTAGTGCA GTAGAAAACT GCTAGAATCA GGGATTCAGA GCAGCTTTGT ATAATCTGCT AGTGCTGCTT GCCTGCCTGG 001520 001521 TGGATCCTAC TCCGTGGCCT ATTTGTCTTA TATGCACAGG CCAAAACCTT GACCTCAGCT CTATCAGGTG GTGAGATTAC 001600 001601 ACTCTAGCCA GCTCGCTGGG CCCCTGAGCC TCCTTGCTGT TCCCTCACTC CATCTCTATG CACGAGAGCT CAGTGTTGTG 001680 001681 CGTGCCGTCT CTCAGCTCCC TGCTCGGCCT GTCAGGCAGG TCCTGTTGGC AGGAAGCCTA AAAGAATGAA AAACTTTGAG 001760 001761 ATAGAGAATT GCTTAGAAAC TGCCTTGACC CACTATCTCC TCAGCCTTGG CCTAGGCCGT GCAAAGTTAG TGGGACAAGG 001840 001841 TAATGTAGAG GCCTCTGGGA GAGTCTAATA TGAGGCCTCA GAGTTCGCTG CTTCGTCCCA GCCCAGTGGA AGTGAAGCAA 001920 001921 GTTAGAGATG GGGCTTGAAG GACCAGCCAG GGAGCCCCAT TTGCCCTGGG GACACCCTCA GGCCAGGCCT AGGTGGCTGC 002000 002001 ATATGAAAGA GCCTTTCCAG GTTTCCAGTT TCAGGTTCTC AGAAGGAAGC TAGGTGTCTC ACTTACTCCT GGCTATCCCT 002080 002081 GGTGCCCAGA GGGACCATGA CCAGAGTCAT TGAGCCTGTT CTGAGCCCAG AGTGTTGGCA CCTCAAAGAC TTGGCTCATC 002160 002161 CCCTTGAATC AGCTTCAGGG ACCAGCCCCT CTAGTGCCTA CTCTGCCTGC TTTTTTCTCC TCCTGCCTCC TCCTCCTCCC 002240 002241 TGCACCTTAG GTCTTGGTTT CTATCCATCT CTCTGTTCCA TCTTCCTTGT CTCGACTAAT TTCCCGTatg tagtccactc 002320 002321 agtttctgag cgagtagaaa ctgagggagt aaactgacta catacataca ggaagttagt caagggttag ggttacaaaa 002400 002401 ctttctcttg cctctagctc ttagtatctc tTGATTGCAC TCCTGTCCCT GCCACTAATT GCCTTAGTAA TTTGAGTCTC 002480 002481 ACATTTTGGA TCCAACAGGT CGTAGCTGCC CAGTGTGTCA TCTGACAGTG GGATGTAGTC ATGATCCATA GGTCTCTGGC 002560 002561 CACACCTGGT TTATTGAATT CTACCCAGGA AGGGCAGAGT TACATGGTTA AAAACTTCAC TGCTACTCCT CACAAGGCCA 002640 002641 TAGGCCAGGA AGACATGATA TTGTTGTTTC ATTTGCTCCA TGGGTACCCA AATCCTAGGG CCCTGTAGTA TCTGTGAGCC 002720 002721 CAGGCCTGCT CTGTGCCTAG TACCAGGATA CAGATGGAGT AGTTGTAATT TATTCACAGA TCTCAGTGAT ACATCCAGTT 002800 002801 TAGGAAGAAA GGAGTTTGTG AAGGCCACAT ATTTTTCTTG AATAGACAAA TATTCCTTTC TAAttttttt tttttttttg 002880 002881 agacagggtc tcattctgtc gtccaggctg gaatgcagtg gcacagtctc agctcactgc agcctcgacc tcctgggctc 002960 002961 aggtgatgct cccacctcag cctcccaagt agctgagact gtgggtgtgc accaccacac ctggctaatt ttttgtattt 003040 003041 ttttgtagag atggggtttc gccatcttgc ccaggctggt ctcgaactcc tgagctcaag caatccaccc gcctctgggc 003120 003121 tgggattaca ggcgtgagct accatgtctg accCCTTTCT GTAATTTTTA ATACTCACTC TCCAACTTTA ATGATCTTTT 003200 003201 CCTGCTCCAA AAAGCAGTTA CACTAAGATC ACAGGTgggc agacatatca cccccatttt acagatgaag agaccaaaac 003280 003281 ccagagaggt gaagtgactt gcctagggta gcacagggag gcagggcagg cctaggatcc gggcatccca tatttgggtt 003360 003361 ccttccctgc tctcttcttc ccacccctct TAACATTGTG CCCCCAGTAT TTGCTCCCTT CACTGAAGCT CAGTCCTTTA 003440 003441 TTCCTGGGCC TTATTTAAGC TAAATATGCT TTGACTCAGT GCTTGATGCC TTTTCTATAG GTAACTATGT CCAGCTCTTG 003520 003521 GCAAAAATCG ATAATGAATT GGTGGTCAGG GCTTACACCC CTGTCTCCAG TGATGATGAC AGAGGCTTTG TGGACCTAAT 003600 003601 TATAAAGGTA AATAGTGCCC ACCATATCTG GCTAGCTCGT GCTTCCAAGC CTACTGAGGG TGGTGGGGTG GAGGGGCAGT 003680 003681 GCTTTTTCTC TGAGGGCACA TATGCCCTAG GCAGGGCTTT CCAGCAGTGA AGCTACAGTT AACCTTGTGG CAGCTTCATC 003760 003761 TTCAGGGATT GCGTACAACA ATTCAGAGAG GAGAACACTT TCTCTGCAAA GCTTCCAGCA GTAAATGCAT TTTCTAGTTG 003840 003841 TACGTGGCTG TGGCATTGTG TCTGGGAATG TGAAAGCAGT GCTGCCTTGC TTTTCAGATC TACTTCAAAA ATGTACACCC 003920 003921 CCAATATCCT GAAGGTGGGA AGATGACTCA GTATTTGGAG AACATGAAAA TCGGGGAGAC CATCTTTTTT CGAGGGCCAA 004000 004001 GGGGACGCTT GTTTTACCAT GGGCCAGGTA CTGGAGGGGT TAATACTTGG GCTCCCAGCT GGGAGGAAGA TTCCTGCAAT 004080 004081 GGTTCCATTG TTCTCGTACA CTCCTCAGAT TTGAGTCACA TGGGGTTGTC CTTAGTCTTC ATTCATTCAC ACACAATGCA 004160 004161 TAATGATCAC ACTTGTTACA CATTCACACA CCCACTTCAT GAGGTTGTCA GCTTTTGTAA GGTAGGGGAA TGACTTGGTG 004240 004241 TTTCCTCGTC ATTGTATCAA AATCTCCAGC ACAATGCCTG ATACATAAAT GGTGCCTGCT AATACTGAAA AATGGATGGA 004320 004321 GGGAGTCCAT GCTCCTTGGT TACTCACATA GCCATTGTTT ACTCACTGGT TCACCTCCGT GAGTGAGAAT GCTCTTTGAG 004400 004401 TCTCTGTGTT AACTTCAGCT TGCCCCTCTT TTTCCTCAGA ACAGAAGGCC CGGCGATTCC CCGACCAAGC CCAGGCTCTA 004480 004481 TTCCCACTTT GTGCACTGGA GCACCAGGGC TAGCTGAGGA GACTGCCCTG GCCTGCTTCT CCAGCTTAAA ATGGTGCAGA 004560 004561 CAGTCCCTTA GCTGGACGTG CCTCCTGGGA GTCCTAAGGA ATGTCAGTGA TCTTTTGCAG TCTCTTTAGG CAAGAACTGC 004640 004641 AGAGGTCATA AGCATTCTCT GTGTTTCCAG GGAATCTTGG AATCAGACCA GACCAGACGA GTGAGCCTAA AAAAACACTG 004720 004721 GCCGATCACC TGGGAATGAT TGCTGGGGGC ACAGGCATCA CACCCATGTT GCAGCTCATT CGCCACATCA CCAAGGACCC 004800 004801 CAGTGACAGG ACCAGGATGT CCCTCATCTT TGCCAACCAG GTCAGTTCCT GCTGAGCTTG CAGTGGTAGG ATGGAATGTT 004880 004881 TGCTGAGCTG GGCTCTTGTT TTCATTTCTC CTGCATTGAC TGAGCTCATG CTGCTTGGGT GCCTGCATCT GTGGGAGGGC 004960 004961 TTAGTGGGAT CAACAGGGCT GCTGGCAGCT GGAGAAGCTG AGTCCAGGCC TGCTTTTTGC ATGTATTTAA CTCTTTTGTG 005040 005041 TCTCCTCAGC CAGCCCTAAG CACTAAGCAT TCCTTTTTTC CTTAAGATGT ACTGCTGTAT TTTTGCTAAG TGTAAAATCA 005120 005121 CAGATGTCCT CAGTGGACAC TTCAGAaaat acagaatata aatatttact tactttttaa atcttttttc tatatatgtt 005200 005201 atatatttgt aatttatata tgcttttttt ttttcactca gcattaccac aacaggcatt ttcttctctt taagatgctt 005280 005281 tataaatatt ttcatcatag tttttatcaa gttgcactat aatttactaa cttccacatt caggctgttt tcagttctaa 005360 005361 ataatatggt gatgaataat tgtgcctacg cttgattact tttagattat tttctaaaac agaatcccag aagtggaatg 005440 005441 actgggatga gaatcatgag gagttttaag ATCCAGGTCT TCTGTGCAGT TATCTTTGAG GCTGTGACAG GTTATTTTTG 005520 005521 GCTTTGGTTC CCTTTCCCCC AAATGGGGCT CCAGACTGTT TTCCTCTCCT TCACATATCC AGTGCTGTTC TATCACAGGA 005600 005601 CTTTCTGAGC CCATTACATT TCTTCCAGAA GATCCTGGGC CTGCACTGAG CTTGTTCCAG TTAGGTTTGC TGTGCTAGAG 005680 005681 CTCAGTGTAG ATGTAGGAGG CAGGGCTGGA GCTCCGAGTG AAGCCATCCT GGCCAGCGCT TGGCTAAGGT CCTTCTAGTT 005760 005761 GGAGGCGGTC ACTGCAGCTC CATGGGAACC TACATCCCAT GGAGGTTCTT CATCCACATG GAGGAACTTC ATCCACAAAA 005840 005841 CAAAGGGTTT GAGCTTCAGG AGCAGCAGCA GAACTCTTGT TTGCCGTGGG AGTTGGCAGC GAGCACTCCA GCTGGAGTGG 005920 005921 TGGCAGCTTT GGCCAGGAGT ATGCTGACCG GTGTAGTCAG TCCAGGGAAC AAGAGGATGG CCCTGGAGGG GCTTTTTCAG 006000 006001 TGTTGCTTCT TTTCTAGACA GAGGAGGATA TCTTGGTCAG AAAAGAGCTT GAAGAAATTG CCAGGACTCA CCCAGACCAG 006080 006081 TTCAACCTGT GGTACACCCT GGACAGGCCT CCCATTGGTA CGACATCCAT TGCCCTCACT CACCATGGGT CAGCACCAAC 006160 006161 CCTTGACCAC TTTGAGGACT GGTCTCTGTC TCTTTGTTTT GTTTTAGTTT TGTAGGACCA GATGTGGGGG TTAAGCCTGG 006240 006241 GGCTCTGGCT CCAGATGGGA AATGTGAGAA ATTGAGGGAG AAAGGATTTG GGATGGCCTG CTTTTAAGGG CAATCGAGAG 006320 006321 CAGGTGTCTA ATACATCAGC AGCACCTCAC GCTGCACTGA ACATCAAAAG GGACACTGCC CCTGTCCACT GTGAACACCC 006400 006401 ACCCATTCCA CACAGCCATC ACATACACAT CTAATATGGG CACTGACCCC TTCACCACTC ACCCTTCTGC TTACGGCCAC 006480 006481 CACACCCCTT ACCGCCCACC TCACCTGGAC ATGCTGAGCC CCCAGACAGC TGCTGCAGCC CAGACAGCAT CCCAGCAACC 006560 006561 ACTGTGCACA GAGCACCCCA CAGGCGCGCC TCTCACACTG CTCCCGGCTG TACCTGCTTG TCATACAGGT CCCTGGTCGG 006640 006641 CAGAGGGCGC TACCCTACTG AGCAATTCTG CGCAGTTCCA CTAACACCAG GCCACACCCT GCCGGACAAC TCCAGCTGGC 006720 006721 TGTACTGATT CACACACCTC GGTATACCTC GTTGTGTTCT CCTTCCTCGT CAATGCTGAC AGCTGACAGA CAGCAGCAGG 006800 006801 GCTTCAGGGT CCCTGCAGTG AGCCTGGGAC CTGGGGTGAT TGCTGCAGAG GGCTGTTTAC TAGTTCTGAG GCTTTTTGCA 006880 006881 GGGAGCAGTA GTACAGACTT CTAAGCCTTT GTAGAGCAGC TTGTCACCTC CTCCCTGGCT GAGGGTGGGT GTGCAGGCGG 006960 006961 CCTGGGATCA GGAACTCCAC CTGGCATCGC TCAGCTTGCT CCTGCATCTC CTTCATTTCA GGCTGGAAGT ACAGCTCAGG 007040 007041 CTTCGTTACT GCCGACATGA TCAAGGAGCA CCTTCCTCCT CCAGCGAAGT CCACGCTCAT CCTGGTGTGT GGCCCGCCAC 007120 007121 CACTAATCCA GACGGCGGCT CACCCTAACC TGGAGAAGCT GGGTTATACC CAGGACATGA TTTTCACCTA CTAACACCTC 007200 007201 CACGTGCTCA GCAATTTTGC ATGTCCCTTT TCATCTGTTT CAGAGTAAGT TCAATTTCAC CACGGTAAAC TGGGATGTTT 007280 007281 TCAAAAGTGC CTTGCCATGT ACCTTCGCGC ACACACTGGT TCTCCTCTTT TGGGTGTGGG CCTAACAAAA AGGGCTCAAG 007360 007361 GGGCTGGAGA CTGGCTGCTG GGGCCTCCTT GCTTGGAGGC TGGAAAGAGC TCCATTTCAG TATCTTTCTC CGTGGTTTTG 007440 007441 TGAAATAAAC TCAAGTACAA AGC |
Predicted Small Protein
Name | NONHSAT017797_smProtein_2096:2356 |
Length | 87 |
Molecular weight | 9338.6475 |
Aromaticity | 0.104651162791 |
Instability index | 75.3245348837 |
Isoelectric point | 5.04974365234 |
Runs | 12 |
Runs residual | 8.67754251998e-05 |
Runs probability | 0.055069775658 |
Amino acid sequence | MTRVIEPVLSPECWHLKDLAHPLESASGTSPSSAYSACFFLLLPPPPPCTLGLGFYPSLC SIFLVSTNFPYVVHSVSERVETEGVN |
Secondary structure | LEEEEELLLLLLLHHHHHHLLLLLLLLLLLLLHHHHHHEEEELLLLLLLLLLLLLLLLEE EEEEEELLLLEEEEEEEEEEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHH HHHHHHHHHLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTT TTTTTTTTTiiiiiiiiiiiiiiiii |