NONHSAT017486
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017486 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2056 nt |
Genomic location |
chr11+:2161747..2169894 |
Exon number |
3 |
Exons |
2161747..2162177,2167475..2167757,2168548..2169894 |
Genome context |
|
Sequence |
000001 GGCCCGCGGG CTAGAGGCAC TTTACCGCCC GGCGGGAGCG CCTCTCCTCC GCGTCCCTCG CCCCAGCCCC CTGCCCGCCC 000080
000081 CACTTTGGGA CCCTCCAGCC GCTTTCCCCA CGAATGAGAT CTTTGCAATG AGCAAACGAA AGTGGCGCGG ATTTCGGGGC 000160 000161 GCCCAGCAGG AGCGAGCGCA GCCGCCAGCC GCAAGTCCGC AGCCGTGTCC CGCGCCCCAC GCCGGCCTCC CCGGCGGCAG 000240 000241 CCGGAGACGA GCGCCAGCAC CGGCGGGACA GCAGCAGATG CGGGCCGAGA GCCGGTCAGG GGCGCAGAGG CGGAGGGGAT 000320 000321 CGGCGCGGCG GGGAGCTCAC CGCGAAGCTG GAGGCTGCGT CCGCGGGCGC ACCAGGAGCT CAGGCAGCGA GCGATCGAAC 000400 000401 GCTCTGTGGC AGGCGGTGGA CGCTGCTGAA GCTCTGGCTC TGAGCTCACC GCTCCGCCGT CCGTGGGACC AAGCCCAGCA 000480 000481 TTTTACAAAC CCAGCTCCTG TCTCCAAGGG TCCTCAGAGC GCCCCTCCGT CACCCCCTGC AGGGCGCCGC AGACGAGGCG 000560 000561 CTGACCTTGC GCTCGCTCCC CTCGCTGGGG AAGGACACAC TCGCTGGCGT CACCGGCCGG CCTGGGAAGT AGGACTAAGG 000640 000641 ACCCGAACTG CAACCCTCCA CACCAGACAG CACAGACCAC CCCAAGGCTG CTCAATCTGC CCAAAGCCAA AAGAGCTCCC 000720 000721 CTGCCAGGAC CTCGGTGCCG TGGAGACTGC GGGGAACCTG CTCTGCCCAC ACCTGCTCTG GCCCCTAGAC GGAAGCACCT 000800 000801 GGAGCCAACC ACGGAACTCC AGATCCCAGC TGTGTGACTG AATCCACGCC AGCCTCTCTG AGCCAAAGCT GCTTGCAGAA 000880 000881 GGGGGAGATC CCAGTTCGAA GACTCCCGCG CAGAGCCTGT GGCCCTCTCT GCCAGGCCTC AGGGTGCCTG AGACACTCAC 000960 000961 CTCTCTGCCT CGCAGTTGGG GCTGAGGCTG GGGCTGGCTG CCAGCTCAGT TCTGGGAGCG CTGGGGTCGC CTGGGCCACA 001040 001041 GGCACAGCAG CTCACCTCAG GACTGGGCTC TCTGGCCTGC TGGGGCTCAG GCTGTGGGGC AGGCTGGGCA GGGGGCTGAG 001120 001121 CTGGCAGCGA TTCAGAGCCC TGGGGCTGGG GGCTGGAATC CACCTCCTCC CACACAGGCT CGGTGGTGAC TCTTCGGCCC 001200 001201 CTGGGGAAAA ACAAAAAGAT ATTGCTGAGA TGACCTCTTT TAAAAGCAAA GCCCCCCTCC CCATACACCC CAGGCCTGAG 001280 001281 CCCTGTCCCA TCCCCCTCCC CGGGTTCCTT CAGGTCACCT TGTCAGGATC TGGGCAGCGG CTTCCCCCTC TAGCCCCTCC 001360 001361 CCTGCCTAGA GCTCCCTCTT TCAAAGTATA AGGGAGGGAA GAAGTGGTGA GAAGTTTGCC TAGAAAGGGC TTCCCGGTGC 001440 001441 TGATGGAGAG GCCGAGACCC TTCTGTTGGA CAGGCTGCCC TGTTCCTGGG TGAGGATGGG CTTCTGCCTG GCACTGGGGG 001520 001521 TGGAGGGTGC ACACGAATGG CCCGCCTTGA GGGGTCATGG CACGGAATAT GAAAGCCTCC TCCACCTCCA AACACCCCCA 001600 001601 CCTTGGAAGG AGATAAGGAG GGGGCCCCAG CAAAAGCCAC TGGACACACA GCTCTGCTTG ACGAGGCCAG TGAGGGACGG 001680 001681 CGTGGCTGTG CTTCCTGGGG AAATGAACCC CCTCCCCACA GACACACCCT GGGTGGATTG AGGAGTCTGG GTCCAGGGTG 001760 001761 CAACAGAGAA AAACTTCATG CATGAATGAG CATTCCCAGG GAAACTGCCT TGGCCCCAGG GCGCCTCTCT GTGCCAGGGA 001840 001841 GGCTGGGAGA GCAGCAAGGG GGACCAGGTG CGCCATCAGG AGGAGAGAAG CTAAACCTAG GGGGGACATG GAGGGCCGTT 001920 001921 GTTGCCTCTC CCGGCGTTTC TCCTCAGTCT CCTGTCCAAT TTCTTGCTGG TGGTCAGCAG GCATAGGGAG GCAGGAGGGA 002000 002001 AGGAAGCTTT ACCTGTAAAA TGGTGTATAT ATGTATAAAT AAAATATCTG CGCCAG |
Predicted Small Protein
Name | NONHSAT017486_smProtein_1781:2017 |
Length | 79 |
Molecular weight | 8695.9616 |
Aromaticity | 0.0512820512821 |
Instability index | 54.7538461538 |
Isoelectric point | 10.3217163086 |
Runs | 14 |
Runs residual | 0.0458098811757 |
Runs probability | 0.0384018472254 |
Amino acid sequence | MNEHSQGNCLGPRAPLCAREAGRAARGTRCAIRRREAKPRGDMEGRCCLSRRFSSVSCPI SCWWSAGIGRQEGRKLYL |
Secondary structure | LLLLLLLLLLLLLLHHHHHHHHHHHLLLEEEEHHHLLLLLLLLLLLEEEELEEEEELLLL LLEELLLLLLLLLLEELL |
PRMN | - |
PiMo | - |