NONHSAT017486

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT017486

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2056 nt

Genomic location

chr11+:2161747..2169894

Exon number

3

Exons

2161747..2162177,2167475..2167757,2168548..2169894

Genome context

Sequence
000001 GGCCCGCGGG CTAGAGGCAC TTTACCGCCC GGCGGGAGCG CCTCTCCTCC GCGTCCCTCG CCCCAGCCCC CTGCCCGCCC 000080
000081 CACTTTGGGA CCCTCCAGCC GCTTTCCCCA CGAATGAGAT CTTTGCAATG AGCAAACGAA AGTGGCGCGG ATTTCGGGGC 000160
000161 GCCCAGCAGG AGCGAGCGCA GCCGCCAGCC GCAAGTCCGC AGCCGTGTCC CGCGCCCCAC GCCGGCCTCC CCGGCGGCAG 000240
000241 CCGGAGACGA GCGCCAGCAC CGGCGGGACA GCAGCAGATG CGGGCCGAGA GCCGGTCAGG GGCGCAGAGG CGGAGGGGAT 000320
000321 CGGCGCGGCG GGGAGCTCAC CGCGAAGCTG GAGGCTGCGT CCGCGGGCGC ACCAGGAGCT CAGGCAGCGA GCGATCGAAC 000400
000401 GCTCTGTGGC AGGCGGTGGA CGCTGCTGAA GCTCTGGCTC TGAGCTCACC GCTCCGCCGT CCGTGGGACC AAGCCCAGCA 000480
000481 TTTTACAAAC CCAGCTCCTG TCTCCAAGGG TCCTCAGAGC GCCCCTCCGT CACCCCCTGC AGGGCGCCGC AGACGAGGCG 000560
000561 CTGACCTTGC GCTCGCTCCC CTCGCTGGGG AAGGACACAC TCGCTGGCGT CACCGGCCGG CCTGGGAAGT AGGACTAAGG 000640
000641 ACCCGAACTG CAACCCTCCA CACCAGACAG CACAGACCAC CCCAAGGCTG CTCAATCTGC CCAAAGCCAA AAGAGCTCCC 000720
000721 CTGCCAGGAC CTCGGTGCCG TGGAGACTGC GGGGAACCTG CTCTGCCCAC ACCTGCTCTG GCCCCTAGAC GGAAGCACCT 000800
000801 GGAGCCAACC ACGGAACTCC AGATCCCAGC TGTGTGACTG AATCCACGCC AGCCTCTCTG AGCCAAAGCT GCTTGCAGAA 000880
000881 GGGGGAGATC CCAGTTCGAA GACTCCCGCG CAGAGCCTGT GGCCCTCTCT GCCAGGCCTC AGGGTGCCTG AGACACTCAC 000960
000961 CTCTCTGCCT CGCAGTTGGG GCTGAGGCTG GGGCTGGCTG CCAGCTCAGT TCTGGGAGCG CTGGGGTCGC CTGGGCCACA 001040
001041 GGCACAGCAG CTCACCTCAG GACTGGGCTC TCTGGCCTGC TGGGGCTCAG GCTGTGGGGC AGGCTGGGCA GGGGGCTGAG 001120
001121 CTGGCAGCGA TTCAGAGCCC TGGGGCTGGG GGCTGGAATC CACCTCCTCC CACACAGGCT CGGTGGTGAC TCTTCGGCCC 001200
001201 CTGGGGAAAA ACAAAAAGAT ATTGCTGAGA TGACCTCTTT TAAAAGCAAA GCCCCCCTCC CCATACACCC CAGGCCTGAG 001280
001281 CCCTGTCCCA TCCCCCTCCC CGGGTTCCTT CAGGTCACCT TGTCAGGATC TGGGCAGCGG CTTCCCCCTC TAGCCCCTCC 001360
001361 CCTGCCTAGA GCTCCCTCTT TCAAAGTATA AGGGAGGGAA GAAGTGGTGA GAAGTTTGCC TAGAAAGGGC TTCCCGGTGC 001440
001441 TGATGGAGAG GCCGAGACCC TTCTGTTGGA CAGGCTGCCC TGTTCCTGGG TGAGGATGGG CTTCTGCCTG GCACTGGGGG 001520
001521 TGGAGGGTGC ACACGAATGG CCCGCCTTGA GGGGTCATGG CACGGAATAT GAAAGCCTCC TCCACCTCCA AACACCCCCA 001600
001601 CCTTGGAAGG AGATAAGGAG GGGGCCCCAG CAAAAGCCAC TGGACACACA GCTCTGCTTG ACGAGGCCAG TGAGGGACGG 001680
001681 CGTGGCTGTG CTTCCTGGGG AAATGAACCC CCTCCCCACA GACACACCCT GGGTGGATTG AGGAGTCTGG GTCCAGGGTG 001760
001761 CAACAGAGAA AAACTTCATG CATGAATGAG CATTCCCAGG GAAACTGCCT TGGCCCCAGG GCGCCTCTCT GTGCCAGGGA 001840
001841 GGCTGGGAGA GCAGCAAGGG GGACCAGGTG CGCCATCAGG AGGAGAGAAG CTAAACCTAG GGGGGACATG GAGGGCCGTT 001920
001921 GTTGCCTCTC CCGGCGTTTC TCCTCAGTCT CCTGTCCAAT TTCTTGCTGG TGGTCAGCAG GCATAGGGAG GCAGGAGGGA 002000
002001 AGGAAGCTTT ACCTGTAAAA TGGTGTATAT ATGTATAAAT AAAATATCTG CGCCAG
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Predicted Small Protein

Name NONHSAT017486_smProtein_1781:2017
Length 79
Molecular weight 8695.9616
Aromaticity 0.0512820512821
Instability index 54.7538461538
Isoelectric point 10.3217163086
Runs 14
Runs residual 0.0458098811757
Runs probability 0.0384018472254
Amino acid sequence MNEHSQGNCLGPRAPLCAREAGRAARGTRCAIRRREAKPRGDMEGRCCLSRRFSSVSCPI
SCWWSAGIGRQEGRKLYL
Secondary structure LLLLLLLLLLLLLLHHHHHHHHHHHLLLEEEEHHHLLLLLLLLLLLEEEELEEEEELLLL
LLEELLLLLLLLLLEELL
PRMN -
PiMo -