NONHSAT016752
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT016752 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2112 nt |
Genomic location |
chr10+:124639149..124658230 |
Exon number |
6 |
Exons |
124639149..124639595,124640191..124640272,124641114..124641183,124644233..124644368,124647785..124648239,124657309..124658230 |
Genome context |
|
Sequence |
000001 GCATGCTCCG CTCTTTAGCG CTTCCTGAGC AAAGTTTGAA CGCCTCTCGA GTCCAGTTGG CTTATGCGCA TGCGTTTCTC 000080
000081 TGGTGCAGGT TCTCACCAAA TCCAGAAGCG GCGGGCATTT GAAATGATGT AAGCCGGGAG TCGCTCTGCC TGCCCGTTTC 000160 000161 TGCGCTGCAC TGGCCGACAC TTAAGCACTG GAAGAGAGGC CTGGCAGGAG GCGGCGCAGT GGACACGCGG TCCGAGGACG 000240 000241 GGGGCCTCAC CCGCCGCCCC ACGCTTGCCT CTTCCTGGGA TGCCGCAGGC GGGGCCCTAA CTCACAGCCT CCTCACCCGG 000320 000321 GCTCGTGTCT GCGCCCGCGA CTTCGACTGG GAGGAGCTTC TGGCGCCACC TGCGCCACGG TGCGCCGGGC CGCCGGCGAC 000400 000401 CGGGTCGCTG CGCTCGGCGA CTGCCGCGCT CCTCGGGGAA CGTGAGGAAT CTGGTGATTT AGAAGAGAAG ATTGAACAAC 000480 000481 CAAGATGAAA ACCCCTGCTT CCTTTACCTG AGGTGTGGCC CTGATGGAGT AAACGCGAAA TTATTTTCTA CAAAAATTAC 000560 000561 TTAATATTGG CATCCTCCAC TCATGCCTGT AAAATAAAGT AAAGACGGGG TTTCACCATG TTGGCCAGGC TGGTCTCAAA 000640 000641 CTCCAGACTT CAAGTGATCC ACCCGCATTG GCCTCCCAAA GTGCTAAGAT TACAGCATGA GCCACCACAC CCTGTCTGAG 000720 000721 TGCTACTTTA AATTTAATTG TATTCCTATT GAAGAGCAGC TTCAGTTGGT GTTGGGCAAT GCTGGATACA AGCAAATGAC 000800 000801 TGGACTACAA TGCTCATCTG CCTTAGGAGC CTTAGACAAG TCATCCTCCA CACCTTTCCC TTTTAGAACT GGATTGACAT 000880 000881 CTGGAAACGT GACTGAAAAC TTACAAGCGT ACATTGATAA AAGCACACAG GCATCTAGTG GAGAGAATTC TACAAAGCTT 000960 000961 GATGAGTGTA AAATTGTGCC ACAAAACCAT TCCCTTCTTG AAAATGATCT TAAAAATGCA ACATCCCCTT TCTTACCAAA 001040 001041 GAAAGCAAAT GACAACTCAA ATATACCTAA CTCTGAGTTG CTGCCTTTTC TCCAGAATTT ATGTAGTCAA GTTAACTATC 001120 001121 TCCTTGTGGG ACGTAAGGCC GAGTGACAGG AAAACACCAC CAAGCCTGAT GAAGGCATTC TTGGTGTTGG AATGGAAGAG 001200 001201 CAGCCTGTTT GCTCCTACTT GGAATAGATT CTTTCTAAAA ATATGGAACT GATAGAAAAG AAACTTATAG ACTACATTGA 001280 001281 TCAGCGAATA TATAAACTCC AGGAGCACAT TGATGATAAG ATTGCTTTGT TGATTGATTT GCTGCAAAAT CCCAACTCCC 001360 001361 CGCCCAGTAG GCTGCCTCTA AGACATTATG ACTCTGGAGA AGGACTTTCA AATGGAGAAA GATGAGCTCT CAACATAAAC 001440 001441 AGTGTACTGC AGATATTTGT TACATATTTA TTACAAAGCC AAAACCCAAA AATATTTATA AAAAGCAAGG ATTTAATGTC 001520 001521 CTTTTAAGGA TCATCATCTT ACTTACTGAA GTGACCTCAG TGTTCATTAT TACTACACTT GTACTGTATA CTAAGACTTA 001600 001601 ACATGATACA GTATTTTATT TTTGCTAGTA ATATTTTTCA CTCATAAGTG TATATGTACT TCTGTGTTAT ATGTTCTAAA 001680 001681 TGTTTAAGGA GTTCTAATAT AATTCATTAG TTGATATAGT ATATGTTTGA TTGAAGTACT GTTTTAATTT ATATGAAGAC 001760 001761 CTTATTTTAT AGTTTCAGGG ATATAAAAGG AATGCTTAGA GTATTTGATT TTTTTTTCCT AATTGACTCT TAGAAAACTG 001840 001841 GGTACTTAAC CTGGAACCTT TATTTTAGAT CACCAACTTG AATTTTATAT TGTTTATTTC AGATAAAAAA TTAGATGTGA 001920 001921 TGTTTGGCAT GTGTAAAATC AGTTCACATT GGGGCCATTA ATTGTACATT CTGTCACATT GTAACAGTAG ATAAGAAAGT 002000 002001 GATTATCAGA ACTGGTCTAT TCCTTGTTAG GATTGTTACT TTGGATTTAG TGTATGATGT AAAATGGGAG AACTGATCTC 002080 002081 ATTTTATCTC AATAAACCCA GAAAGTGTAA GG |
Predicted Small Protein
Name | NONHSAT016752_smProtein_1421:1600 |
Length | 60 |
Molecular weight | 6820.1741 |
Aromaticity | 0.101694915254 |
Instability index | 50.4491525424 |
Isoelectric point | 9.69854736328 |
Runs | 11 |
Runs residual | 0.0419841393251 |
Runs probability | 0.0550497021085 |
Amino acid sequence | MSSQHKQCTADICYIFITKPKPKNIYKKQGFNVLLRIIILLTEVTSVFIITTLVLYTKT |
Secondary structure | LLLLLEELLLLEEEEEEELLLLLLLLLLLLLHHHHHHHEEHHHLLLEEEEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | oooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiii |