NONHSAT016362
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT016362 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2905 nt |
Genomic location |
chr10-:112628648..112631552 |
Exon number |
1 |
Exons |
112628648..112631552 |
Genome context |
|
Sequence |
000001 GGAGAGGAGT GAAACGTGGA AAGTTGGGGA GGGGCGCGGG AGGGCGCATG CGCATGTGGC TCCTGGGACT GGCTGGAGCG 000080
000081 GGAGTTGAGC GGGAAGTCGG GGTGGGGGTA TGTTGGGAGG CGTGGCGGGA TGGGAGCGTT GGGAAAAGGG CAGTGCTGGG 000160 000161 GGATGGGGAC GAGGATGAAG CTTCCTCGAC CCAGCTCACC CATTCTCCTC ACAGGGCGTT CTGCAAACTC GGCTGAAGCA 000240 000241 AAGGTTTTGA GCTTCCTGAT GGTCCCTGCC TCCATTTCTA GAAACTGCTT AGGCGAACAC TCCAAGTGAT CAGCCTGTCC 000320 000321 GATTCCTCCT CCCTCTGGCC GCTGCTTTCT CTGTGGCTTC CAGTTTCTGG AGATCCCATG CTAAGAAGTT TCTCTCAGCG 000400 000401 AATCCCCTCA AACCTTTGAG ATGGAAATAA TTCCCATTTC ACAGATATAA AGCAGGCTCC AAAACTCTTT GAAGTTCCTT 000480 000481 TGCTAATCAT GACTAGCCAA GCCTCTGGCG TTCAAACGCA CAAATTCCGG CCTCCAGTGC TGGGGTTCTC AGCCATGGCT 000560 000561 ACAATTTCTG TATTGAAACT TCCACCTCCC CTCGCTGTTC TCTGTGACTT TTCCTCTTGG CTGCATTGGT TTTGGCTGGT 000640 000641 ACTATCCTTA CTCTTTCAAG GTCACGGTCC CCTGAGGGTG ATAACCAGAA CCTTAGGCTT CCTTTGTGTT CCCAGGCGGG 000720 000721 GACTTAGCCA CTGCCTCTGA TCAGATTTTT CAGTTGTCTG ATGGGCAGCA CCGAATGATT GCTTGTGCTC TCCAGAACCC 000800 000801 AACTGCCTCA TCCCGCACAG GCCAGCGCTT TCCCTTGGCT GCCCAGTCAC CCTGCCTGGG AATCATCTCT AATGCTACTA 000880 000881 TTTCTCTGca cacacacgca cacacacaca cacaAACCTT CACTGGCTTC CCATTGCCTC TCTTGAGTGT CAGCGCCTCG 000960 000961 GTCGGTCATT CAAGGCTCCG TGATGTGACT TCAAGACTTT CAGGCTGTGT CTCCACACAT CTCCCCATAT GCTTCCTCAC 001040 001041 CCCCTGGTAG TTCTTTATAT ATCACCTTGA AATGTCTCTC TTCTCATCTC CTATCTCCGC CTGATGCAAT CCTTCTGTGC 001120 001121 CTCATGGCCC TTCCTGGTAG TTTTTTAttt tgttgttgtt gttgttttat ttaattgagg caggggcttg ccctttagcc 001200 001201 caggagaatg cagtggcatg atcacagctc actgctgcct cgacctccgt cagcctccct agctcaacga tcctctcacc 001280 001281 tcagcctcct gagtaactgg gactacaggc acagctcact atgcccagct aatttttgta ttttctgtac acacagggtt 001360 001361 tcatcatgtt gtccaggctg gtcttgaact cctgggctca agcaatcagc ccacctctgc ctcccaaagc gttgagatta 001440 001441 caagcgtgag ccaccattcc tggACCCTCG TAGTTTTTCT GGAGCCTCGT GATTTGATAT GATCTTCCTG CCGCTGATTC 001520 001521 CTCACAGTGT TGGCTTGCCA CACCTCCAGG GGCACTGATC ACATTCTACC TGGCATTATT TCATCTGAGT CCCTGTCCTA 001600 001601 GCCCTTCTGC CCATTAGACT GTAACCTTGT TTAGGGAAAG ACCTGTGTCT TACTCATCTG TGAttttgtt gttgttgttg 001680 001681 ttttgagaca gggtcttgcc ctgttgccca ggctggagag cagtggtgca atcttggctc actgcagcct caacctgttg 001760 001761 gggtcaagcc atcctcccac ctcagctttc caagtagctg agactacagg cctgtgccac cacacccagc tagttttttg 001840 001841 tatttttagt agagatgggg ttttgccatg ttgcccaggc ttctcttgaa ctcctgagct caagggatct gcctgcctcg 001920 001921 gcctcccaaa gtgctgggat tacaggcgtg agccactgtg cctgaccCAC TCACCTGTCA TTGTAGTACT TAAGATGCCT 002000 002001 TGTTCATTTA TTGTGCCTGT GCAATAAATA CACCTTGATT TGAGTTTACA AAGATTCTCA GCAGTTGGTG GTCATCCTCA 002080 002081 TCTCCTGGGC GGGGGCCTCC TGGTGTGGCC AGTATCTGAA TTAGTCTCAT AACTCATGTT CACTTTTTAA AATCGGAGCT 002160 002161 TCCCAGACCT CAGTTTTGTT TTGTTATTTT CCATTATCTG CAGCTGTCTC CTTTCCCCTC TCTCACCTAT ACTCTACTGA 002240 002241 TCAGTGACTG CTGGCTCCTT TGTTACCCAT CCTTCTCTTT CTCCACATTT TTTCTCTTCT CATCCCTTTC AGTTCTGGAC 002320 002321 TGTTTCCTTC TTCCTCCCTG TCTTTCATTT AGtcattcat tgaatgtact tactaagcac atatagcata atcaggctgt 002400 002401 gttgggTAGG CATCCCGAGT TCTATGAGAT AAAGAAAGAA TGGGATATGA TTACCAATTT TAAGAAGCAT CTAAAACAAC 002480 002481 CTGTTATGTT TTAGCAAATT GCCCCCAAAG GACCCATTAG GGAGGAAAAC GTTCATGTCC TTTTTGCGTA TCATCTCAAG 002560 002561 CAGTACCCAT GATGGCTGGG ATCCCAGAAC CCACCTTTGA GAATGCTGCC GTATTTGCGT gtggttgaca aggttgggcc 002640 002641 agacactcag gaaatagggt tgtcgtccta cctcccccac taacttcctg taagaacttc agcccctctc aggacctttt 002720 002721 tctttaccaa taaaattcag aaattgggct caatcagtaa ttcccaagtt attttccaaa gaacatgaat tttgtggaac 002800 002801 tttaatagat atcatgcaaa aaaaaatgtg ggagggattg ttccatggtc aaatggtctt ggaaataact cgtttaaaca 002880 002881 aaaataaaac tgtttcttta cccac |
Predicted Small Protein
Name | NONHSAT016362_smProtein_488:739 |
Length | 84 |
Molecular weight | 9242.9737 |
Aromaticity | 0.10843373494 |
Instability index | 44.2024096386 |
Isoelectric point | 10.8184204102 |
Runs | 14 |
Runs residual | 0.0286479250335 |
Runs probability | 0.0555492467258 |
Amino acid sequence | MTSQASGVQTHKFRPPVLGFSAMATISVLKLPPPLAVLCDFSSWLHWFWLVLSLLFQGHG PLRVITRTLGFLCVPRRGLSHCL |
Secondary structure | LLLLLLLEELLLLLLLLLLLLHHHHEEEELLLLLEEEEELLLHHHHHHHHHHHHHHHLLL LEEEEEELLLEEEEELLLLLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHLLLL LLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTiiii iiiiiiiiiiiiiiiiiiiiiii |