NONHSAT016362

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT016362

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

2905 nt

Genomic location

chr10-:112628648..112631552

Exon number

1

Exons

112628648..112631552

Genome context

Sequence
000001 GGAGAGGAGT GAAACGTGGA AAGTTGGGGA GGGGCGCGGG AGGGCGCATG CGCATGTGGC TCCTGGGACT GGCTGGAGCG 000080
000081 GGAGTTGAGC GGGAAGTCGG GGTGGGGGTA TGTTGGGAGG CGTGGCGGGA TGGGAGCGTT GGGAAAAGGG CAGTGCTGGG 000160
000161 GGATGGGGAC GAGGATGAAG CTTCCTCGAC CCAGCTCACC CATTCTCCTC ACAGGGCGTT CTGCAAACTC GGCTGAAGCA 000240
000241 AAGGTTTTGA GCTTCCTGAT GGTCCCTGCC TCCATTTCTA GAAACTGCTT AGGCGAACAC TCCAAGTGAT CAGCCTGTCC 000320
000321 GATTCCTCCT CCCTCTGGCC GCTGCTTTCT CTGTGGCTTC CAGTTTCTGG AGATCCCATG CTAAGAAGTT TCTCTCAGCG 000400
000401 AATCCCCTCA AACCTTTGAG ATGGAAATAA TTCCCATTTC ACAGATATAA AGCAGGCTCC AAAACTCTTT GAAGTTCCTT 000480
000481 TGCTAATCAT GACTAGCCAA GCCTCTGGCG TTCAAACGCA CAAATTCCGG CCTCCAGTGC TGGGGTTCTC AGCCATGGCT 000560
000561 ACAATTTCTG TATTGAAACT TCCACCTCCC CTCGCTGTTC TCTGTGACTT TTCCTCTTGG CTGCATTGGT TTTGGCTGGT 000640
000641 ACTATCCTTA CTCTTTCAAG GTCACGGTCC CCTGAGGGTG ATAACCAGAA CCTTAGGCTT CCTTTGTGTT CCCAGGCGGG 000720
000721 GACTTAGCCA CTGCCTCTGA TCAGATTTTT CAGTTGTCTG ATGGGCAGCA CCGAATGATT GCTTGTGCTC TCCAGAACCC 000800
000801 AACTGCCTCA TCCCGCACAG GCCAGCGCTT TCCCTTGGCT GCCCAGTCAC CCTGCCTGGG AATCATCTCT AATGCTACTA 000880
000881 TTTCTCTGca cacacacgca cacacacaca cacaAACCTT CACTGGCTTC CCATTGCCTC TCTTGAGTGT CAGCGCCTCG 000960
000961 GTCGGTCATT CAAGGCTCCG TGATGTGACT TCAAGACTTT CAGGCTGTGT CTCCACACAT CTCCCCATAT GCTTCCTCAC 001040
001041 CCCCTGGTAG TTCTTTATAT ATCACCTTGA AATGTCTCTC TTCTCATCTC CTATCTCCGC CTGATGCAAT CCTTCTGTGC 001120
001121 CTCATGGCCC TTCCTGGTAG TTTTTTAttt tgttgttgtt gttgttttat ttaattgagg caggggcttg ccctttagcc 001200
001201 caggagaatg cagtggcatg atcacagctc actgctgcct cgacctccgt cagcctccct agctcaacga tcctctcacc 001280
001281 tcagcctcct gagtaactgg gactacaggc acagctcact atgcccagct aatttttgta ttttctgtac acacagggtt 001360
001361 tcatcatgtt gtccaggctg gtcttgaact cctgggctca agcaatcagc ccacctctgc ctcccaaagc gttgagatta 001440
001441 caagcgtgag ccaccattcc tggACCCTCG TAGTTTTTCT GGAGCCTCGT GATTTGATAT GATCTTCCTG CCGCTGATTC 001520
001521 CTCACAGTGT TGGCTTGCCA CACCTCCAGG GGCACTGATC ACATTCTACC TGGCATTATT TCATCTGAGT CCCTGTCCTA 001600
001601 GCCCTTCTGC CCATTAGACT GTAACCTTGT TTAGGGAAAG ACCTGTGTCT TACTCATCTG TGAttttgtt gttgttgttg 001680
001681 ttttgagaca gggtcttgcc ctgttgccca ggctggagag cagtggtgca atcttggctc actgcagcct caacctgttg 001760
001761 gggtcaagcc atcctcccac ctcagctttc caagtagctg agactacagg cctgtgccac cacacccagc tagttttttg 001840
001841 tatttttagt agagatgggg ttttgccatg ttgcccaggc ttctcttgaa ctcctgagct caagggatct gcctgcctcg 001920
001921 gcctcccaaa gtgctgggat tacaggcgtg agccactgtg cctgaccCAC TCACCTGTCA TTGTAGTACT TAAGATGCCT 002000
002001 TGTTCATTTA TTGTGCCTGT GCAATAAATA CACCTTGATT TGAGTTTACA AAGATTCTCA GCAGTTGGTG GTCATCCTCA 002080
002081 TCTCCTGGGC GGGGGCCTCC TGGTGTGGCC AGTATCTGAA TTAGTCTCAT AACTCATGTT CACTTTTTAA AATCGGAGCT 002160
002161 TCCCAGACCT CAGTTTTGTT TTGTTATTTT CCATTATCTG CAGCTGTCTC CTTTCCCCTC TCTCACCTAT ACTCTACTGA 002240
002241 TCAGTGACTG CTGGCTCCTT TGTTACCCAT CCTTCTCTTT CTCCACATTT TTTCTCTTCT CATCCCTTTC AGTTCTGGAC 002320
002321 TGTTTCCTTC TTCCTCCCTG TCTTTCATTT AGtcattcat tgaatgtact tactaagcac atatagcata atcaggctgt 002400
002401 gttgggTAGG CATCCCGAGT TCTATGAGAT AAAGAAAGAA TGGGATATGA TTACCAATTT TAAGAAGCAT CTAAAACAAC 002480
002481 CTGTTATGTT TTAGCAAATT GCCCCCAAAG GACCCATTAG GGAGGAAAAC GTTCATGTCC TTTTTGCGTA TCATCTCAAG 002560
002561 CAGTACCCAT GATGGCTGGG ATCCCAGAAC CCACCTTTGA GAATGCTGCC GTATTTGCGT gtggttgaca aggttgggcc 002640
002641 agacactcag gaaatagggt tgtcgtccta cctcccccac taacttcctg taagaacttc agcccctctc aggacctttt 002720
002721 tctttaccaa taaaattcag aaattgggct caatcagtaa ttcccaagtt attttccaaa gaacatgaat tttgtggaac 002800
002801 tttaatagat atcatgcaaa aaaaaatgtg ggagggattg ttccatggtc aaatggtctt ggaaataact cgtttaaaca 002880
002881 aaaataaaac tgtttcttta cccac
[back to top]

Predicted Small Protein

Name NONHSAT016362_smProtein_488:739
Length 84
Molecular weight 9242.9737
Aromaticity 0.10843373494
Instability index 44.2024096386
Isoelectric point 10.8184204102
Runs 14
Runs residual 0.0286479250335
Runs probability 0.0555492467258
Amino acid sequence MTSQASGVQTHKFRPPVLGFSAMATISVLKLPPPLAVLCDFSSWLHWFWLVLSLLFQGHG
PLRVITRTLGFLCVPRRGLSHCL
Secondary structure LLLLLLLEELLLLLLLLLLLLHHHHEEEELLLLLEEEEELLLHHHHHHHHHHHHHHHLLL
LEEEEEELLLEEEEELLLLLLLL
PRMN LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHLLLL
LLLLLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTiiii
iiiiiiiiiiiiiiiiiiiiiii