NONHSAT015220

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT015220

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3809 nt

Genomic location

chr10-:81805989..81838949

Exon number

5

Exons

81805989..81808934,81813152..81813342,81816075..81816161,81820572..81820689,81838483..81838949

Genome context

Sequence
000001 ACGCCTCACC GCGAAGTAGC CCAGCCCCAG GACTGTGACC AGAGAGGGCA AGGGTCTTGC TGGACGGAAA TAGGCGGTAG 000080
000081 CCGCATTGCT GGCCTCCGAC TTCACCATCC TCTTGAAAAA CCCAGACACA GAGTTGGCTG GGAGCTCCCC AGCCGTCCCC 000160
000161 GCCCCCATAT AAGAAAAGCC TGGCTAGCCG GTTTCTCAGG GCCCTGGGCG CCCGCCCAAG ACCCTGGCGG ACCAGTATGC 000240
000241 TTGCTCTCAT TGCGGAGTCT GGTCCCCTCC CCTCCGCTCC TAGCGCGCGG GAGTCGGGAT TGTGCTTGCA CGACTTCCCC 000320
000321 CGGCCCGCGG CCTGTGAGCC CAGGTCCTGG GGTGAACCGA GCGCTCGCTC GTTCGTCAGA CCGTAGCGCT CCAGCGGCTG 000400
000401 TCCTTACTGT GTAGTAGCCA AAGCTGAGGG TGATGACTGT GAACCAGAAC AGACTGCCTC GCTGAAAAGT CACTTGGAAC 000480
000481 TCTTCTGTGG CATCTGAAGC AGATGGACGA AGCCAAGAGG GCCGAGAGTA TCTCAGCACC TAGAAATGGA CAAGGCTGGT 000560
000561 TATTAGAACA AAGATTTCGC AGGTGATTTG ATATTTCATG AAATTCAGAA ATAATTTGGA GCTTTTCAAA CCTGGGATAT 000640
000641 GGAAGAAACT GACACTCCTG TTCTCTGGGA AGGATCTCCC ATTAACCAGT CATAATGAAG TAAGAACAAG AAGATGGGGA 000720
000721 AGAGGAAGTG TAAAACCGTG GCTTAAATTT GCCAAGGATA AGCTGAGTGT ACTTCAGCAG TCATTTGCAC AGAATCCTTA 000800
000801 TCCTAATTTT ACAACCAGGG AAAAACTGGC TGGACAGTCT CTTGTCCTGT GTTTGTAATT GATAACTGGT TTCAAAATAA 000880
000881 AAGCCAGACC ACCACTTAGA GAGAGACACA GAATGTTCAC TGCCAGGGAA CTGCATGATT CCTCTGCCAA AGGCCACCCA 000960
000961 TTTACAAGAA TCCAGGAAAA CCAGGTGGAA TCTCCCAATG ATGACCCTGA GCAGAACTTC TTGTACCCAG GAAGTTCTAC 001040
001041 TGGGTGGAGC TGGCCACTCT TCCGTGGAGA CACAGGGGAC TCCCAATTAA CATGATGGCT CAAATAACTG TAGCCTTATG 001120
001121 GATTAAAAGG AAACTAAGCT GTGATTTGGA GTATCCAGGT GATACAGAAA ATGGCCCTTG TCGATGTAGA TCAGCATTAT 001200
001201 TTCCTTATCC TTCTGCATCT CCTCCTCAGT ATTCTGAAAG GGACAAGCCT GAGATGGGGG AAAGCCAGCA TGCAAGGCCC 001280
001281 TCCCCTTTGT GCTGTGTTCA TGGTGTGCAC GGAGAGAGGC AGCAGCAGGA GGAACAGAAA GGTTATTTTC TTTACTGACT 001360
001361 CTTTCAAGGA CATCAGCAGA ATGGTTGGGA ATGTCATCAT GAGCAGCCTC AGCCTCAGAA TTACCAGGAG AAGCTGGTCT 001440
001441 TCCAGGATCA GGTTCTAATG TATATGAGTC ACAGGATTTA GGGAAGCAGG CACTTTCCCT TCAGTCCCAG CAGCATGGTT 001520
001521 GATGTTCCCA AGTAATGGAG AGTCCCTGTG CTCTCAGTTG TGGCACACAC CTTTGCAAAT AGTGATCAGA TCTCCACAAA 001600
001601 CGCCTCTTGG GTAAGATATG CAGCAACATA GCTGGCTGCA GAGCAACCCA GTTCCCAAAT CCAGCAGCTC TTGGATGAGA 001680
001681 AGTCTGCAAG TGTTTACTGC TGGGACCAGG ACTGTGTTTC TAGGAAATGG TGCTAGGCTT CAGAGAGCAT CATCCACAGG 001760
001761 TCATCCCACA ACCATCCACA CAGAAGCCTG AGGAAAAGGG CTCTGCAGAG CTTGCACATA AAGATGCTGA ACTCAGGAAG 001840
001841 GCTCTGTGAG CTGCTGGTCT CTTCTGGTAG GGCAGCAGTG TCCTGAGAAG GTGGAGCTAG AGTATGGAGA ACAAAACTAA 001920
001921 CAAGCACCAA GGCAGCAAGC AAGGCAACCC CCAAATGACA GCAGTTGCCA AATCCAAAGC AATCTGTGCT TCAGAAGACA 002000
002001 GAGGCTCTGC ACAGTCCCTG TCTCAGACAT TGTCTCCTCC TTAGAAGATA CCTAACAAca gcactgtggg aggctgaggt 002080
002081 gggtggatca ccaggtcagg agatcaagac catccttgat ctttagtaga gacggtgaaa cactgtctct actaaaaaat 002160
002161 acaaaaaaaa attagctagc cgtggcggcg ggcacctgta gtctcaacta tttgggaggc tgaggcagga gaatggcctg 002240
002241 aacccgggag gcagagcttg cagtgagctg agattgcgcc actgcactcc agcctgggca acagagtgag actccatctc 002320
002321 aaaaaaaaaa aaaaaaaaaa aaaaaaaaGA TACCTAACAA GCAGTACAAG AATATGAAGG ACCCCACTGC CCAGACTTTG 002400
002401 TATGGAGGGG TGTCTAAGGT GGCTACAGCA AAGCTGTCAT CTCCATCGAC CGGGACAGCA TCTCCAGCCA TGATGTGTGG 002480
002481 CCTGCTGGAA CAGCAGCCAT GTGTCCTTTC ACAGACAGCC CACCAAAGCT CTGACTGTGA AGGACATCCC AACATCAGCC 002560
002561 TAGCCTGCAT ACACTTAAGG CATAGAATCA CCTGAGGCTT CTCCGTTGAA GACAGGGACT CCCGATGGAG TTGCAGCCCC 002640
002641 AGCTTTGCAC TGTAAAGAGC CCCAGGGGGC TTCTGTGCTA GAGCAGGTGT GCAGACCCCT CCTCACCCCC TTCACTGAGA 002720
002721 GCTGCTGCCT GGAACCAGTG TTTTGACTGA GTCACCTCTG GACGTGGGCC CACAAGATCT GAGAGTGCCC AGACGAGAAG 002800
002801 TTGAATGCCT TGTGTTGACC TGAGTGTTTG GAAAAAAGCC CCAAACTTTG AAACAATTTT CATAATTTTG AGCTTCAGGA 002880
002881 TGTGGAATCA CTTCTCAAGT ATTCTGGAGT TCTGTCCATC AGAGCGGGTC CTGCCAATGC TGCCCTGTGC AGCGCTTCAG 002960
002961 GCTGCATCCC TCCCACTAGG GGGCGCCTTT CACATAGTGG CGCCTGCCTT CTAGAGGAGC AACATTTCCT GAACTGCAGG 003040
003041 GTTCCCTCGG GGCTTTGTGT AAAACACATC CACTGCATAG AATTTGTGTT ATTTCCATTT TGTTTTCTTG ACAATATTTA 003120
003121 ATTAATTACA AAATGATGTA TGTTATGATA GTTTAAGCAA TACAGAGAGT AACCAAACAA AAGCTTGGTC TTTTATTCTC 003200
003201 GCACTCTGAA TTTACAGTCC TGAAAACTCT AAACTCATCA TATAATCTAT ATTGTAAAGA CTTTGATAAt cccttccctt 003280
003281 gcctttcctt tccccattcc cccttcccct tccttcTTCT ACATTGTATG ATGTTTTTCA TATTTACATT CTAACCAATT 003360
003361 GTGTCATGTG ATACTAATTT GCAGAATAAA GCATGTTTTG CACATATTTC CAAGTCATAT AACATGCAGA CATACTTCAT 003440
003441 TTTGTAAATA TCTTCCTTCT CTTACTATAA GATTGAGAAT AGGTAAAGAG Caactctcca atgcaggtga tgagtgtgat 003520
003521 ttgcactatc actttggaca gccaattgga atatttattg aagtcataga tgcccagcaa ttctgttact ggatgtgtct 003600
003601 catagacaaa ctcttggaca tTCTTATAGA ACACTGAGCC CAAAGAAGAC ACATCATATA ATGTAAGAAG CTAGGACAGC 003680
003681 TTAAAAAAAA AAGGCCTAGA TCTGTGTAAT TGTGTGAGTG TTCTCGGACA TACTGTTTGT AAAAAATCGA GTTATTGAGT 003760
003761 AGTTTGATAA TATGATAATC ATGAAAATAA AGGATAAAGC AGCGAGTAA
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Predicted Small Protein

Name NONHSAT015220_smProtein_1091:1357
Length 89
Molecular weight 10060.2806
Aromaticity 0.0909090909091
Instability index 63.8056818182
Isoelectric point 6.26458740234
Runs 9
Runs residual 0.0290909090909
Runs probability 0.0192839898722
Amino acid sequence MMAQITVALWIKRKLSCDLEYPGDTENGPCRCRSALFPYPSASPPQYSERDKPEMGESQH
ARPSPLCCVHGVHGERQQQEEQKGYFLY
Secondary structure LLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLEEEELLLLHHHHHHHHLLLELL
PRMN -
PiMo -