NONHSAT013489

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT013489

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6467 nt

Genomic location

chr10+:60058915..60065381

Exon number

1

Exons

60058915..60065381

Genome context

Sequence
000001 aaaaaaaaac atggataaga aaactatctc acagagttgt catgaaggtg gaatgcacag gaagcacttt ccactgtgca 000080
000081 caacacctgg taagtgTGTT CCATTATTCA TTACTGTCCA TTTTGGTTCA GCAGTTTAAC AGCATGTCAG AATGAGTAGG 000160
000161 AATCATAACT ACTGCATAGT CATGAGTGTT TCCATTCAAA GAAGCCATTT TCTTTATTAG AAACTATAGC TTAGTGGTAA 000240
000241 CTATAGTCAA CCAACTACAG TTGTTCTGGG GACTAAGGTT GCTTTCTTTG TTATACCCTT TGATTAATAA TGTTAAAAGA 000320
000321 CCCAGAAGAA GAAACTGGAG AAGGACAGAA GCAATAAACA CATCACACAA AGGTGAGGAG GTTGGAAATC TGAACTGAGA 000400
000401 GAAGTAGCTC AAACATTTCT ACTTTTTTCT AGTTCCTCTT TTGTCCTTTA GCCTCCTTTA TTAATATCTG CTCCATAGGG 000480
000481 GGAAAGCCTA GTGAGAAATC CAAGTTTTAG GGACCTCTAT GCACTTGTTA CCATGTCCAC CAGGGGGAGG CCTGACAACA 000560
000561 CATTTCTGTG GTAAGGTAAT AGGTGGGAGT GGGTCAAAGT CTCTTTTTTG TAGAAGTTTC TCATTAACAC TTCATCAAGA 000640
000641 TTAGAAAAAC AGTGATACTG TTGACGAATG CACGTGTGCC ACTTGATTTC AAAGAAGCAA GTTGATTTCA ACCGTCTAAT 000720
000721 TTTTTATTGG TGTGCTAAGA AAGGGGCGAA TATAAACCCT AAGGGCAGAA TCAAAAACCA GACTGTAAGC TGATCAAAGT 000800
000801 AAGGGGATCT TAGACTGTTC TTTTATCAGT AGGACAGAAA AATGCACACT GGCAGAGAGC TCTAAGAAAT TCCACATGTA 000880
000881 ATATCAAATA AAATTTCTAA TCTCACATTG CCTTCAAATA CATCTTAAAT TATAGGAAAT GTTTAATACA CTTCTGGGGT 000960
000961 GAAGCACATT TCTCTACCCT TACTCTTTTA AGTTTATGGG TTTTTTTTTT CCTGCTGGGT AAGAAGGATT CCATATATTC 001040
001041 ATAATTCCGC ACTCGGATGA AATGAAGAGT CAACTTTCTA TGGTATATCT CTGTGTATTT ATATATTTGT AGTATTTATG 001120
001121 ATGTCTTACA AATACCAACT GCAAGCTAAA AAGTCACTTT ACAGATAGAA ATCAAGGTAT AAAGTATGCA ATTAGAAAAG 001200
001201 AAGTAAACAT GCCTTTGGGG ATTATTAttt atttatttat ttttgagacc gagtctcgct tggtcgccca ggctggagtg 001280
001281 cagtagtgcg atttcagctc actgcaaact ctgcctccca ggttcaagtg attctcgtgc ctcagcctcc tgcgtagctg 001360
001361 ggattacagg tgtgcccagc taatttttgt atttttagta gagacggggt ttcaccatga tggccaggct ggtctcgaac 001440
001441 tcctgacctc aagtgatcca ctgcctcagc ctcccaaagt accgggatta caggcatgag ccaccgtgcc cagccTGATT 001520
001521 ATAATTTATA TTGGAAGTTA TTGTATAAGC AGAAAATTCA GAGAGATCCA GAAAAGAGGT GGGAGCTCTT TGGGTTTTAA 001600
001601 TAGTTGGAAA ACACTGCATG GAAAAAATCC AGCATGACCT GGATCTTTAT AATAGTATAC ATAAGGAAGA GACCTGTAAG 001680
001681 GAAACACCTG TCATACTTGT CTGTTCAATG GCACTAACAC AAATAAACAA ATAGGCTCAC TCTCAATGTT TGAATACAGC 001760
001761 CCAAACAATA GAAGCAGAGC TCAGTGTGAC ATGGAATTCC ATGACAACCT TCCTTCTAAG CAAATTCCAT TCAATTTTCA 001840
001841 TCCCCACTTA ATCACTTGCA CCATCAGTTT AAACTAGATT TTATAAGAAC CTGCCTGCta atgaatacta ttatttctgc 001920
001921 atagggtttt atagagattt taaaatgctt ctcatatatc atctcagttg atcttcacag caaatctgta aagttggtag 002000
002001 ggtttattgg tccttatttt atagatggcc tgaaaagtta ggtgccttgc aaaggtcatg ccattaacaa AGAAGGTATA 002080
002081 TAATGTTGAC GTGAAGTCCT ATATGCTTTC TGCAGCAACA GATCACCTCT TGTATCATGA CCAAATGTGA ATCTAACTCA 002160
002161 TTTTAATTCA TTTTTTCTCT TCTGTCCCTT CCTCTATCTC CATGCTTCTT TTTTGAAGAT CTTCCCTTAA TTTTTTTTTC 002240
002241 CTGAAGCCTA CAAATTTCTC CCACTTATTT ATCTCTTTAT TATTTATGTA GCTCTGATCC TTCAGGCTAC ACACCTTTTG 002320
002321 CAAGGATATG GATAATGTCT ACTTTCCTTT GATTTTTTTG TCCTCCTCCT GTTTGTTCTA TTCTGACTCT AGAGACAACA 002400
002401 GGCTATTTGG CATAGATTTT ATATGTGAAT TGGTCCCTTT CCTTCTTATC TGAGGCATTT AAGCATGAGT TGACCCAAAT 002480
002481 TGACATGCTC TCTGGACTTC TATTCATTAC ACAGACTTCA GCTTCCACAA CATCTAAAAT AGTCTCTAAC TGGATATCAG 002560
002561 ATTTCAGAGT GGTTTTTTTT TTTTTTTGGG ACTTACTGGT CACAGTGCCA CCAAACCTTT ATATTCTCAG GTCCACATAT 002640
002641 CAAAAATCTG CCCTGGATTA TAATATTATG CTGCTTTACC ACAATATGTC TTCCACCTAA TCATATGATC TCCAACAATT 002720
002721 TTATTCCTGA ATAATAATGT ATGTAGACAA ATATTTAGCT TGCTGCTTAA TCCTGTGTCC TTTAAAAACT GTTCTTCAGA 002800
002801 TCTTATTTCT TCAGATGTTT CTTCACACAT AAACCATAAG CTTTACATCA CACTCCATCA CAGTCTGTCT AAAACTAGGC 002880
002881 AAAATGGGAT TTCACATCAA AGTTTCACCT ATATAATCCC TGAGGACCAG CTGACTTGGA AATTAATCCT AGCAACAGAT 002960
002961 AATCTTCGCA GAGATTTCTG ATGAAGTGTT TTTTTCCCTG AGACATTGCT GGCAGTCCTT TTTAATTCCG GTGACCTTAG 003040
003041 AGGAATAAGC AGATGTCCCA ACCCTATCAG AAGTTCCTTT TGCCTTTTCC CCTCCTCAAG GTACAGCAGA ATTTATCTCT 003120
003121 CTGCTTTTTT TTGTTCCATC CTTTATACAT TTAAAAAAAG AGAGAGATGT TACAACATTT CTTTTGCTTC TTTTTCTGCT 003200
003201 ACCTTTCTAC TCTTTGAGAC GACTATTAtc agacaaagct ggctgcagat cttggctcca ccccacttta tcacctgtgt 003280
003281 gaccctcagc aaatgaacct ctgaatctct gaacctcaga ctctgtgtgt gtaatataca aaaggtgata gctacttcaa 003360
003361 aaggctgttg tcaggaacaa ggcagataat atacctaaag cacgtagcac aatgtctggt tcataataag tgcCAAGACA 003440
003441 CCATGttatt atttattatt attatttttC CTCTTCTCAA TTTCAGTTCT TCCCAGTGCT TACTTCCCAA TTACTTCATG 003520
003521 GCATAATCTT TTTACTCTCC ATCAATTATT TTTCAAGGAC TCTATTCCCT CTCAAAGTGG ACTACTAGCT AACCTTCTAC 003600
003601 CAAAGCAGCC ATCAATATTC AGGACGCCAA TAATACTGAT TAAATATTCA CTGTAATGTC TAGTCCTATA TTAGACATGA 003680
003681 TGACCTCAGA GATGTAAACT GACCTCAGAG AGAAGGGCTC TTAAACAGCT AGAACTCCCA CGTTTCGATT CCTGGACAAT 003760
003761 CCGCAAATAA ACATCCAAAG TAGATACATT TGCATTTGTC TTCCCATTGT CTTTTGATTA CTCTATTTAA TTTTTTAAAA 003840
003841 ATCTGAAAAT AAACATTTAT GAATAATGTC CATATGAACT AATGGATTAA ATCTGAACCC CTCACTGGAT ATTCAAGGCC 003920
003921 CTTCATAATA TAGCCCTAAC TTAACTTTCT TATCATTAAA TACTCCCTAA TGCCTGCCTT ACGTTTCAGC CCTTGTCATT 004000
004001 ATTCATTATT CTGCAGTATT TGCCTTCACA TTTTGGCCTC CGTATCTTTG CTTATGCTAT TCCATTTGCA TATGTCTTCT 004080
004081 CTCATTCTTT TTTTATGTTA AACATTACCT ATTCTTAATG TCCATTTCAA ATTCTCTGTC CTCTGACATC ACTGACAATC 004160
004161 TTACTCCTTT TGCATTTCCG AAACACTCAT ATGCAGGTAT CTATTCATTC AGGGAACAAG TACAAGGTAT CATACTGATG 004240
004241 CTTTGGATAC AAAGattaat ttttaaaatt taaaaCAATT CCAGCCTAGC AGGAAAACTA ATAATAATAC CTATAAAACA 004320
004321 GAATAACTAG TGTTAAAATA AAAGTATATG CAAAGTACAG TTGTTCAGTC TATTCAAATT CTGTTCTTGG GGGCTACAGG 004400
004401 GTGGTTAGAC TGACTGTCTT TCCAGAGAAA GTGGCACTTG AATTGGCACA CAAAGAATAG ATGAGATGTG CCCAGTCCAA 004480
004481 GAATAAGAGG AAGTTAAGAG GGGCTGTGGG GGTAGGGGAT GGGGGGCGGG AAGCCACTGG GGAAAAGAAG AGGCATTAGG 004560
004561 TTGCGTAGTA TGCTAGTGTA GATCAAGGTT ATTCAGTGTA GTTCTTCAAG ACCAAGCTTG ACTACCCCTC TGGCACTGTC 004640
004641 ATCCTTCATC TGCAACCCAT ACCCTAGAAA TCAGCTATTC CAATCTAATC TAGATCCCAC ACCAAGCTGC TCTAATTTCT 004720
004721 TGCAACACCT CCCCACGtct ctctttcttt ctctttcttt ctttgctttt gtctttcttt cttttctttc tttctctttc 004800
004801 tccttctttc ttttctttct tgacagagtc ttgctctgtc actcaggctg gagtgcagtg gcgtgatctt gagttcacag 004880
004881 cagacttaac ctcttgggtt caagcagttc tcccacctca gcctcatgag gagctggcac tacaggcatg tgccatcaca 004960
004961 ctcagctaat ttttgtattt ttttgtagag acagcgtttc accatgttgc ccaggctggt ctTTTTTTTT TTTTTTCCTG 005040
005041 GGTAAATCTG CATATTGCTT CCTCTGCAGA GCCATCCCTA CTCCTTCAGT CAGGTAAATT AGGTGCCCCT TCCTTATGGC 005120
005121 CCTTAGAACT GTGCATAGCT TTTGTCAATA GTTTTACAAT GACTATAAAC CTTTTTACTT AAGCTATAAA GTCTTATATA 005200
005201 TTTCCCTGCT GTCTAACATA TGTTGAATGA ATGAATGAGT CAAtgggcac ctgttatgtg ccagaaattc tggtaggccc 005280
005281 taggagggaa agtgcagtaa gacataattc ttgcccttaa ggagtttaaa gctcagATGT GTCATAAGGG GTGTATCAGT 005360
005361 GGCTGAGGAT GAAGGGAGAA GAGAGAAGGA GGTATTGAGT TGTGGGAGCC ATTGGCCGAG ACTGGAGAGA GGAGACAAGG 005440
005441 AGACGGATTC CCTTTGTGTG TTCCCAGCAC CTACCAACAT AAAGACTGAA AGCTGTTGGA CTCATGCTCA AAAGAATCAT 005520
005521 AGGCAAGTTG TGTTTGTCCC ATTAAgctaa catttaaaaa tcagaagatt ttatccaaaa gatggatttc caacttcttt 005600
005601 tgaatgatct ggtaacatgg gactgtagtc tcagaatgga aaaacagctg ACCTTTAAAG ATAAGGTATT AACTCTCACA 005680
005681 TTttttattt taaataaacc tatttcagtt aagaaatgaa ttactttaaa gaaaaataaa ggtaaataac tagacaggca 005760
005761 gtccttggac atggcctaaa aagtgaaggG GCTCTTAAAT GATGGTTCAA GGCCATAGAG AGCAACACAT GGGCCTCCAG 005840
005841 TTTGTCTACC ACTGCCCACC CTATCCCAGT TCCAACTTCC AACATTTTAG TCAAAATGta tacataagtt ggacatatct 005920
005921 gtaaaatcgt tgtgtattgc ttcctttata aagtgccatc tttgtaatta ttttccaaat ttagtctcat ctgatgttta 006000
006001 tattgcaact tctactttcc tgttatttgt attttcttag aatgtctttg ttcattcttt taaagttttc taagtaattt 006080
006081 taatttagtg ctctctctat atacagagta tacaatgtaa atgttctttg ctttataatc caagcagatt attttataat 006160
006161 agataggttt agcatattta catttatgga tataacagat gagtgctagt tctatcattt ttttgatgat ttctttctta 006240
006241 tttttagctt atttttaatg atatttcact atatgttcta tgcttgtttt gtgttgttac attttttctg acaattggaa 006320
006321 aagtttgtat ttttgtttta TCTTTATTGT GAAATATACA TACTCTTCTA tttgttttgt ttgtttgttt gtttgtttgt 006400
006401 ttTTAGATGG CGTctctggc agccaggctg gaacgcggtg ggtgatctcg gctcactgca acctttg
[back to top]

Predicted Small Protein

Name NONHSAT013489_smProtein_1745:1876
Length 44
Molecular weight 5094.6986
Aromaticity 0.116279069767
Instability index 59.0906976744
Isoelectric point 6.21942138672
Runs 5
Runs residual 0.0410243010191
Runs probability 0.0224165341812
Amino acid sequence MFEYSPNNRSRAQCDMEFHDNLPSKQIPFNFHPHLITCTISLN
Secondary structure LLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLEEEEEEEEL
PRMN -
PiMo -