NONHSAT012893

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT012893

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1185 nt

Genomic location

chr10-:43016388..43047739

Exon number

5

Exons

43016388..43016575,43018658..43018753,43019060..43019186,43046005..43046063,43047025..43047739

Genome context

Sequence
000001 TGTCCTCGCA GGTCGCAGCT TCATGGCCTG ATGCCTTCAG GAAGTATTTT GAAGTCATCG TGGCTGTGGA TTGGGGGATT 000080
000081 TCTTGTTTCC ACTGACCTGT GAGGCCGCGC ACGTGGAGGG AGGCACCCCG GGTCCTCCGG CACTGTCCGG CCTCGCCTGT 000160
000161 GTCCCTAGTA GCAGTGGGCA TTTCCAGACG GTGCAGCTTG TGGCTAAAGT GACAGGAAGA TGTAGGAGCT TTCAGTCTTG 000240
000241 GATGAGGATT CGAACTGAAG GGCTTAGGCC CAGCTGTCTT GGAGCAAAAC ATCTGTTGTG GGGTGAGAAG GGAAAGGAGG 000320
000321 GGTGAGGGTG CAGGGGCCCT CCTAGGAGGA CATCGGACCT GTTGGGCCGA GACCTCATTA GAGATCTAGA GCACGGATGG 000400
000401 GAGGAGCAGA GGCTCGATTT GTGTCCTGTT CAGACTCCCA CAGGCTGGGT GATGGTGGGA GATTTGTGCC CATTCAGATG 000480
000481 TGGCGGCAGA GGAGGGCAAG GCCGAAGGAG CAGACAGCAC CGCTTCTTGG GGAGTTGTGA AGGCATCATG CGGAGGGCCG 000560
000561 AGCTTAGCAG CCAAGTGGAG GACAGCACCC TCCATGCCTG GATTCGTTAC TCGCTCGTTC TCGATGTTGA GCTGCTGGCA 000640
000641 TATTGCAGCA CAACTAGAGA TGTACGGATG CCCCCATCTT GATCTTACAG AATCAGAGGT GCAGCCGCAA GAAAGCTACA 000720
000721 CCCTCTCGGT TTTCTCTGCT CTGCCAACAC TAGTGGAATA TGATCACATC CCAGGGATCA GTGTCATTTA GGGATGTGAC 000800
000801 TATGGGCTTC ACTCAAGAGG AGTGGCATCA TCTGGACCCT GCTCAGAGGA CCCTGTAGAG GAATGTGATG CTGGAGAACT 000880
000881 ACAGCCACCT TGTCTCAGTA GGGTATTGCA TTCCTAAACC AGAAGTGATC CTCAAATTGG AGACAGGCAA GGAGCCATGG 000960
000961 ATATTAGAGG AAAAATTTCG AAGCCAGAGT CATCTGGAAT TAATTAATAC CAGTAGAAAC TATTCAAGAA TGAAGTTCAA 001040
001041 TGAGTTTAAC AAAGGTGGAA AATGTTTCTG TGATGAAAGC ATGAAATAAT TCATTTTGAA GAGGAACCTT CTGAATATAA 001120
001121 TAACAATGGG AACAGCTTCT GGCTGAATGA AGACCTCATT TGGCATCAGA AGATTAAAAA TTGGG
[back to top]

Predicted Small Protein

Name NONHSAT012893_smProtein_593:790
Length 66
Molecular weight 7274.2622
Aromaticity 0.107692307692
Instability index 77.4738461538
Isoelectric point 4.47186279297
Runs 11
Runs residual 0.0189423076923
Runs probability 0.0374411845
Amino acid sequence MPGFVTRSFSMLSCWHIAAQLEMYGCPHLDLTESEVQPQESYTLSVFSALPTLVEYDHIP
GISVI
Secondary structure LLLEEEELLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLEEEEEEELLLLLEELLLLLL
LLEEL
PRMN -
PiMo -