NONHSAT012611
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT012611 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2213 nt |
Genomic location |
chr10-:31605457..31608024 |
Exon number |
2 |
Exons |
31605457..31607469,31607825..31608024 |
Genome context |
|
Sequence |
000001 CTTACACCTA GAGGCTCTCG CTCTACGGCC GGAACCTTGT TGCTAGGGAC CGGGCGGTTT GCGGCAACCG TGGGCACTGC 000080
000081 TGAATTTGAA TTGAGGGGCG AGGGAAAAGT TTTCCTCAGG TGTGGTGGGG AGAGGGAGGC GGATGCCGGG AAACCGTAGG 000160 000161 GACGCGGTCA GAAAGGCGAC GGGCTGTCGG AGTTGGAAAG GGACGCCTGG TTTCCCCCCA AGCGAACCGG GATGGGAAGT 000240 000241 GACTTCAATG AGATTGAACT TCAGCTGGAT TGAAAGAGAG GCTAGAAGTT CCGCTTGCCA GCAGCCTCCT TAGTAGAGCG 000320 000321 GAATGAGTAA TACCCACACG GTGCTTGTCT CACTTCCCCA TCCGCACCCG GCCCTCACCT GCTGTCACCT CGGCCTCCCA 000400 000401 CACCCGGTCC GCGCTCCCCG CCCTCTTCCT CGCGTAGAAC CGTGGGATCC TAGGTGGCAG GACTCAGAGC TAAGGTATCC 000480 000481 ACAGGCCATG AATTCCTTCC TAAATGAGCG GTCATCGCCG TGCAGGACCT TAAGGCAAGA AGCATCGGCT GACAGATGTG 000560 000561 ATCTCTGAAC CTGATAGATT GCTGATTTTA TCTTATTTTA TCCTTGACTT GGTACAAGTT TTGGGATTTC TGAAAAGACC 000640 000641 ATACAGATAA CCACAAATAT CAAGAAAGTC GTCTTCAGTA TTAAGTAGAA TTTAGATTTA GGTTTCCTTC CTGCTTCCCA 000720 000721 CCTCCTTCGA ATAAGGAAAC GTCTTTGGGA CCAACTTTAT GGAATAAATA AGCTGAGCTG TATTTCAAGT AATATAGTTA 000800 000801 TAAATTAACA ATGTAGCAGT TATTGATAGA GAAATTGAGA AAACTGAAAC GTGACCGGAG TATTGGAAAT AACGTAGTAC 000880 000881 ATCACCTAGC ACAATGACAC ATAGTAGGTG CTCAATAAAT TTATGCTTAT AATTTTTGTC ACTTCTATGG CAGGATTTTT 000960 000961 TTATTAGGTT AAAATTATCT TTTAAACACC TTCCGGAATT TTAGAATATT CATTAATAAT GTCTTCAAAC CTTTCAACTG 001040 001041 AAATAAATTT ACAGCTGAAG TCTGATGATT TAAAGTTAGA AAGTTTAATC TTGAATATAA ATGAACATTT TCTCTCCCAC 001120 001121 ATTTTCTTGG GCATTTTGAG AAGTAAATGC GTTATTTATT GGTCCATGAA ATGTGACTGT AAATATTCTT TGCTATACAT 001200 001201 TATGTCTATA TATCTGCATT CATCCTCAAT GCCAAAACTA GAATCATTAG TCTTAATGAT CATTTTAAGT ACAGGCAGTC 001280 001281 CTCGCTTTCC TTGATACCAT GTTAACCGAA ACTTGTGTAT GTCAACACGG TGTCCTTGCT TTGCTTGGTT AAGTGTGAGT 001360 001361 TCTTCCTCCC TTTTTTTAAG AGTTGTACAA TGTTTTTCAG TCGCCTACCG AATCAGGTCA TAGACTATGG AATTGACCCC 001440 001441 ACCCCACCAA CATTTTTACA GCTACCCTGA TTTCTGACCA GAAAGGAAAA AAAAACTTTC CAGCTCTATC ACACATTTTA 001520 001521 CCTACTCTTA AACTTAGGAG GTATTACAAA TAGCATTTTC TCATGTTCTC TTTCTGGCCT GTACCTCCCT GCTAAGCTTC 001600 001601 CTTCAGTGTT CATCCTCACC TCATAGAGAG ATGAAGTGAA GAGACAAACA GAAGTCATTT TCTTCCTTAC TTTAGTGGTT 001680 001681 TCTGGTTTAG TTAGTTTGGG CCAAACTGTG GACAAGTACC TTTTCAGGTA ACTTTTTTTT CTTATTTCTA TGTCCTCAAC 001760 001761 ACCTAGTGGA GTACGTAGCC AATAGTAGAT GCTTAATAAA CATTTCTTAA ATTAATATTG TTGACCTTTT CTGACCCTGT 001840 001841 TCTTGACAGT AAGGTACATA ATCTGCCTTC ATCCCTTTAG TCCTTAGGAA CAGATAAAGT CATGGATATG AAAGTGATCA 001920 001921 CTGTCATTAA TATCCACATT AAAATTGCTC TTGATTTTAG TTTCTCCATA ATCATTTTCC CTAAACAATG AACTCTGTTC 002000 002001 ACCTTTTTTT TTAAAATATG CACAGTGAAT ATTACTGGTA GCCCAAATCT TCTAACATAA AATTTCCATT TTGTAAAAGC 002080 002081 TTCTGATAAG CATATATGTT ATGAATTGAA TGTTTGATTA TTATACTTTA ATATTCTTGA AAATATTGAT ACCTGGACTG 002160 002161 GAAAGAAAAC AGACAAAAGT AAATCTCAGA ATAAATTACT GCTTTAAACA TGA |
Predicted Small Protein
Name | NONHSAT012611_smProtein_1901:1990 |
Length | 30 |
Molecular weight | 3376.1235 |
Aromaticity | 0.103448275862 |
Instability index | 47.624137931 |
Isoelectric point | 8.27557373047 |
Runs | 6 |
Runs residual | 0.0073275862069 |
Runs probability | 0.0421598068658 |
Amino acid sequence | MDMKVITVINIHIKIALDFSFSIIIFPKQ |
Secondary structure | LLLEEEEEEHHHHHHHHLLLLEEEEELLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | ooooooTTTTTTTTTTTTTTTTTTiiiii |