NONHSAT012521
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT012521 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2066 nt |
Genomic location |
chr10+:29698483..29711299 |
Exon number |
3 |
Exons |
29698483..29698612,29704286..29704341,29709420..29711299 |
Genome context |
|
Sequence |
000001 GCTGCTGAAT AGCTGAGAGG CGCACCCGGG CGGCCAGCTG GGCTCGGAGT GCAGCGGGGT TAGGATGGAC GAGGACGTGT 000080
000081 TGCACCCTGA AGAGCCTCAT CATCGGTGAG AGTGGGGTGG GCAAGTCCAG CCTGCTCTTG AGGTTCACAG ATGATACCTT 000160 000161 TGATCCAGAA CTTGCAGCAA CAATAGACAA TGCAGGAATC ACATGAACCT GTCCATCCAC AGATAAAGTG GTAAAGAAAC 000240 000241 TGCCGTATTA GATACATGAT GGTATACTCT TCAGCCATAA AGCTTCGGGA AACCCTGTCA TCCGCAACCA CGTGGAGAAA 000320 000321 CCTGTCCATC CACAGATGAA GGGATCAGGA AGCTCTGGTA TATATACTGA AGGGAAATGC TTTTTGGCTA CCAAAATAAT 000400 000401 GAAATTTTGT TGTTTGGAGC AACACAGATG AACCTGTCCA TCCACAAATG AAGACATCAA GAAACTCTAG TATGTACACA 000480 000481 AGGCAAAACA CTTCAGCTAT CAAAATCATG ACATTATGTC ACTTGGAGCA ACACAGTTGA CCCGCCAAGG CAGCCTCTTC 000560 000561 CTCCATAGAT GGATGAACGC TGTGGCCGCT GCTCCTGCCT GGGCCATGCC CTGATGCTGC CAACACCACT GCTCCTCTAT 000640 000641 TTATAAGTCT TAGTAGAGTT GCTGACCCAG CAATAACTGA ACAGCTGATA TGTACCTCAC ACTAAGCCAG GCGCTTCATA 000720 000721 TGTATCTAAC TTGAAAAATG CTGAGCTAGT TACCTTAACA CCATTAACTT TTACTTAAAA GTTTGTTTTT CTTTTTTAAT 000800 000801 CCCAGTGAGC TCCAAACAAG TTTTAGGAGG CTCCCCAAAA CCAGTGAAGA CTTTAACTAA AAGTAGAATT TCAAAGTATT 000880 000881 AGAAACCAAA CCCCAAAATT AAATGTGAAG ATCAGTGTCT GTACTGAGCT GGCCCATCTG GTGGACACAG GATTTGCGTT 000960 000961 ATCGACTGCA ATGTTACCCA GGATTCACGA TTTCTAGCAT CTGTCAGGGT TAAGAAAATT GGATTGAGTA CCAAATACAG 001040 001041 CAGAGCAAAC CCGGCTTTGA GGCAAGGGCC CCATCAAGTA GTCATGCAGT ACTTTTGTTA GGGTTCTGGG TGCAAATCTT 001120 001121 CCTCGTCCCT CCCACCTTCT CCTGGCCTCC TTGTAAACCC AAACCGCCAG GTACCTCAAT TTTCTTCAAG ACCAGGCTGT 001200 001201 TCTTAATGTT GGTAAATTGG TCAAGGAAAT GGGTGAGCCA CTGCTTGCTC TGCACATCGT CCTCAGAGTG CTCGGTCTTC 001280 001281 AGGCAGTACA GCAGCTGCAT GGCTTTGGCC TGCAGGAGTA AGTGGCCCAT TCCTAGGCTG TCCCCAAAGA TGTGTCCTCT 001360 001361 GAAGAAGCTG GTCAGGTAGA GGGGGTGTCC ACTATGGTTA TAGATGGGGA AGGAGATGCT GCCCAGGTCG AGCGTTTTGT 001440 001441 CCACCTGCCA GGTGTACAGG AGTGGGTTGG GGGCACCACG CAGAGCATCT TGTACCTCGC GCACACCTGC TGGTACTGGA 001520 001521 GCTGGCTTGC GTTTCCCTGT GCCACACGCA GATCCTGCAC TGTACTGTCC AGTCAACTGA CTTCAGCAAA GATGTCTGGG 001600 001601 TTCAGCAGCG AGTTGCTGTG TGAGGCCACC AGAATGGAGG TGATATCGGC CTCAGTGCTC ATCCTGGAGG TGGAGAAGTG 001680 001681 GTCAGAGTCC TCTGTGGTGA AATGGCCCTA CACCAAAGTG GGAGACATTC AGAATCGAGG CGAAATTGGC CTCAGTGCTC 001760 001761 CTCTTGGAGG CAGAGAAGCA GTAGGAGTCG GTGGTGAAAT GGCCCTGTGT GAATGTGGAA GACCAGCAGA TTGGAGGTGG 001840 001841 AATTGGCCTC AGTGCTTGTC CTGGAGGTGG AGAAGCGGTC AGAGTCCTTG GTGGTGAAGT GGCCCTGCAC AAAACGTTGC 001920 001921 TCCCCCTTGG CCGGTGAAAG AATAAAAGAA AGCTGGCCAC TTGCATTTCC GTTTCAGTTT ATAGAATACA TGTTTTGGAA 002000 002001 ATAGTATCTT CTAGATCTGT CTTTTTCTCT TCTGATTTAA CTTAGTAAAG CTAAGTTTTA TCTCTT |
Predicted Small Protein
Name | NONHSAT012521_smProtein_1403:1579 |
Length | 59 |
Molecular weight | 6089.9882 |
Aromaticity | 0.051724137931 |
Instability index | 67.7465517241 |
Isoelectric point | 9.88458251953 |
Runs | 9 |
Runs residual | 0.0014209928003 |
Runs probability | 0.0128854344541 |
Amino acid sequence | MGKEMLPRSSVLSTCQVYRSGLGAPRRASCTSRTPAGTGAGLRFPVPHADPALYCPVN |
Secondary structure | LLEEELLLLLEEEHHHEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLL |
PRMN | - |
PiMo | - |