NONHSAT011933
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011933 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3476 nt |
Genomic location |
chr10-:28811787..28821695 |
Exon number |
2 |
Exons |
28811787..28814937,28821371..28821695 |
Genome context |
|
Sequence |
000001 CTGCAGCGGC TGCGCGTGCG CCCAGAGGCG CAGCGGGAGG GGGTGCTCTC GGGCGAGCTC TCCGGCCGCG GCCCCCGCCC 000080
000081 CTGCGCTGTC GGGCGGGGAG GTCGGAAACC CCCTGGCGAG ACCACGGGCG GACGCTTCCC GAAGAGCTGC CTGGGCTGCA 000160 000161 GCCGCGGAAG CTGCGTTCTG GGGAGCGGGG AGCGTGCTCC GGCGCCTTCG GGCCGCTGCT GGAAGCCGGA ACCGAGCCCG 000240 000241 GGCCGCTGCC CCTCACCGGA CGCCGCGCGC CACCGGCCCT CCGCGGGGCA GGGGCTGCTG CGAGCTCGCC GGGCGCCCTT 000320 000321 TAGACagtcg tccttgtcta ctccactacc aaatgttgaa gttcttcaag aatcagtcct tTGGAGgtga tgtcattgaa 000400 000401 aatgatgagt aggaaactcc aagagcgcat ttctccacaa aaccagtgaa tacattggca caaattgtca gaatcaattt 000480 000481 tatataaatt ctggaaatta gtcaaaggtt tatagtaacc aaggaaacat ctttttaaaa agatggctga ggctggatgc 000560 000561 tgtggcttat acctgtaatc ccagcacttt gagaggccaa ggcgagcaga gcatttgagt caggagttag agaccagcaa 000640 000641 aaaaattagc tgggtgtgtt tgcgggcacc tgtaatccct cagggaggct gaggcaggag aatcgcttga acctggaaga 000720 000721 tggaggttgc agtgagccaa gatcgtgcca cctcactcca gcctgggtga tagagtgaga ctctgtctca aaaaaaaaaa 000800 000801 aaaaaaaaag tctgaatcct gaatctcagg agcgctttct atcatttaaa cttaccctgg tgccacctcc ctgtccagct 000880 000881 ttgaaaacaa cgacatgcat ttctgatatc tgttcctggt gccaaaggga gcaggatggc cttgttttct tttcttcttt 000960 000961 cttttttttt tttgagatgg agttttgccc gtgttgccca ggctggagtg cagtggcgca atctcggctc acagcaacct 001040 001041 ccgcctcccg gcttcaagcg attctcctgc ctcaacctcc cgagtagctg ggattacagg cacttgccac catgcctgac 001120 001121 caatttttgt atttttagtt gagacgggat tttgccatgt tggctaggct ggtctcgaac tcctgacctc aggtgatccg 001200 001201 cccacctcag cctcccaaag tgctgggatt acaggcatga gccactgtgc ctggccgtgg accttctttt caaagaatta 001280 001281 tggaggctta ttttagttcc cctaacttgg aaatctcctg aggaagaaag gtgactacag gcatttgtca aaaatttgta 001360 001361 aaggcaagtt tattagcctc tgccatcggg ggcaaagaat aatagctaag gcaaacaata gacacaccaa aaagcctggg 001440 001441 aggaaaagct ggaaagtaag atattttgga gaataaaggc ttttaaaact tccacatatt cttgggaatc caaaaggcca 001520 001521 catgtacatg cagggtgagc aaatagagaa gacttgagaa agccttaaac tctcacctct ggctaaccat caggcttgct 001600 001601 caaataggaa gtgaaaacta aggtgaattt gttgcttagc tgaatgttga aggtgtgccc caacacttac acagagccta 001680 001681 ctggtaaaga ctgagagtgt tttctttttg tcttggtttc aggcatttaa ggaaatctgt ttctcttttg gatcactagc 001760 001761 tgcaaattaa gctaacagaa caggagctca gctggtcaca cacagcaacg aatacagact ttataaagtt cagaaaagtt 001840 001841 accaaacagt ggtaaccata acaagtacca acaatgaact atggggaggg aggagaatct gatttccaga gttaccacat 001920 001921 tataatacta ttcaaaatgt cacattttta gcaaagatta catgacaagg aaaaaccaga aaagtatggc ccatacacag 002000 002001 gtaaaaaaag aaattaatag aaactacccc tgaagaagca cagacttcgg atgtacaaaa caaagacttt tcatcaactc 002080 002081 ttttagatat gctagaagag ctaaaggaaa ccatggacag agaacaaaaa aattaggaaa gcaatgtctc atccaataca 002160 002161 gaatatcaat aaagagattg aaattgtaga aaagaaccaa atagaaattc tggagttgaa aagtattata actaaaactg 002240 002241 aaaattcact agaggtattc agcagcagac tggagaagtc agaagaaaga atcaacaggc ttcaagatag gtcaattaag 002320 002321 attatacagt ctgaggagca gaaaggaaaa agaatgaaga aaaatgaaca gagcataaaa gacctctggg actctatcaa 002400 002401 gcataccagt atatgcatga ggggagtccc agaaggagaa gaaagagaga aagggacata atatttgaag aaataatggt 002480 002481 agaaaatgtc ccagctttga tgaaatacat gaatctagat attcaagagg ctcaaagaac cctaaatagg gtaaactcaa 002560 002561 aaagacccac aCCGGaatgc aaaagtgagc tgggtgtggt ggcacgtgcc tgtggtccca gctactcgag aggctaaggc 002640 002641 aggaaaatcg cttgaaccca ggaggcagag attgcggtga gccgggattg cgccagtgca ctccagctgg gcgacagagc 002720 002721 gagattccat ctcgaaaaaa aaaaaaaaaa aaaaaaaaaa CTATTGCTGC AGTCATTCAG ATGGAAATGG GGAAAGAATA 002800 002801 ATATTAACTG ATTTCAAAAA GGACTTGAAG ATGTGAATCA TCTATTTTGC TGAAGAAATC TTAACTCTTT GAAATTACTT 002880 002881 TTTGTTGCTG TTGTCATACT CTTAGGTGCC AAACTGCGGT AAATTTTTTA TCAGTGAAGT GGAAGCATGT GTTTTGTTGT 002960 002961 TTTGGGAATT TTTATCAAGT ATCTTCAGAG AAGATTATTT CCTGCTTTAT CTTCAAAAAC TGGAAAGGAA GGGTCAAAGA 003040 003041 AAAGACAGTA GCTggccggt catggtggct catgcctgta atcccaacac tttgggaggc tgaggtgggc agatcacctg 003120 003121 aggttgggag ttcgaggcca gcctgaccaa cgtggagaaa tgccatctct actaaagatg caaggattgg ccgggcgtgg 003200 003201 tggtgcgtgc ctgtgatccc agctgctcag gaggctgagg caggagaatc gcttggacct gggaggtgga ggttgcggtg 003280 003281 agctgagatc acgccattgc actccagcct gggcaacaag cgaaactctg tctcaaaaaa aaagaaaaGA CAGTAGCTTA 003360 003361 TGTTCATGTC AAGCACCTCT CATCACAGTC TAGTTCCAAG GAAAAAATTC CCAGCGTTTT CTACATTCGG TGCTGCGTCA 003440 003441 TCTGAAATCG GCACATTCCA TGGAGGAAGG AGTCCT |
Predicted Small Protein
Name | NONHSAT011933_smProtein_935:1141 |
Length | 69 |
Molecular weight | 7931.1652 |
Aromaticity | 0.205882352941 |
Instability index | 63.7529411765 |
Isoelectric point | 10.125793457 |
Runs | 9 |
Runs residual | 0.00814785373609 |
Runs probability | 0.0120316394826 |
Amino acid sequence | MALFSFLLSFFFLRWSFARVAQAGVQWRNLGSQQPPPPGFKRFSCLNLPSSWDYRHLPPC LTNFCIFS |
Secondary structure | LHHHHHHHHHHHHHHHHHHHHHHLLHHHHLLLLLLLLLLLLEEEELLLLLLLLLLLLLLL LLLEEEEL |
PRMN | HHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLL |
PiMo | i??????????????????????????????????????????????????????????? ???????? |