NONHSAT011731
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011731 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3103 nt |
Genomic location |
chr10+:22507003..22510097 |
Exon number |
1 |
Exons |
22507003..22510097 |
Genome context |
|
Sequence |
000001 AGCGGACCAT CACGAGAACT GCATGAGGGA AATCCACCCC CATGATCCAA TCACCTCCTA CCAGTCCCTG CCTCAACAGT 000080
000081 TGGGATTACA ATTCAAGGTG AGATTTAGGT GGACACAGCC AAACCATGTA ACTGCATAGC AAAATCTCTG TCGTTTAAAT 000160 000161 ATAAATCTTA ATGACCTTGC TGTTTTTTAA AAAATTAAAG TATACAAAGC AAATGTGTAA CAAAAAAGAA AAAAACAACA 000240 000241 ACAATGACCT AAAAAGACAG GAAGAAATAA TACATATAAA AGGAAAAATA ATAAGAAAAG AAACCACTCC TAGGAGACTT 000320 000321 GTGCCATGGA TACTATGGCC CCTCACCCAG TCCCCCTTCA GGTTCAAGGC TGTTGCTGGG AGTAATTATT GGCTGTTGAT 000400 000401 GGCTCACAGC TGAATCCATT TTCTGGAATT GACCTTGGTT AAAGGAAGTT GCCTCAATAC ATTTATGTCT CTTCTTCAAG 000480 000481 GGTAGCCCAC AATCCAATGA CTGAATTCAA TGCAGCGATT CAAAGACCCA GCCCTGGTGC CTTGGATTGG TACATCTCTG 000560 000561 AATGCTCTTT CAGCCTCAAT GCTCCCCCTG GAGCCAGCTG AGGCTACTGA TGCAGCTGCA TTTCAGTTTG GCTTTTTCCT 000640 000641 CTGCTCAGTA CTATTTTCTC CCTGGCTTCC TCAAAGGAGT TGTTTCTGAG AGCACTCTTC AATAAACTGT ACATGCAAAT 000720 000721 CTCAGAGTCT CCGGGCATCT GACCTGCAGC AGCTAGTGCT GGAAGTGATC CTAGGAAAGT GGCTTTAAAA TGAGACCGCA 000800 000801 GGCACAGCCA GATCACCCAC TGGCAGGCAG GTACTGAAGA CCCATCACTG GGGATAGATG GAGCATGGAT ACCTCTGGCA 000880 000881 TGAGACAGTG GTGCAAGTAT TAAAACATTC CCGGTGTGAG CTGGCGTTGG ATACCAGTAA AAGGGAATGC ACTGGCAGGT 000960 000961 GCAGTATCAG GATTTTGAGA GCTAGAGAAA GTGGTAATTA CAAGGATTAG GGAATTGGCT GCTGCTGACA ACAGTGGATG 001040 001041 CCCTAGAGGA AGACAACAAA AGGCTGAGGT TAATTAATCA CCAATTAAAG GCAAGCAGCA AAGTCAGACA GCCTCTTCCA 001120 001121 CACCATATAA AGAGATTCTC ATCTTCTATG AGCCAACACC AAAAGAGGCT AAGAATCAAG CCCGAGCCTC AACAATAAGA 001200 001201 GTAACAGAGC TTCGGAAGAG GTTGAATGAG GAGAGGGCCT TGTTGGGAAG AAGTTGACCT TAAGGCATGG CATGGTGGCA 001280 001281 TCCTGAATTC CCACATTCTC CCAGACTCTG GGCCTATAGA AGTGGCCCAC TTCATCCTGT TAAAGACCAG CACTGCTCGC 001360 001361 TCACTTGAAG ATGATGCAGT CATCTGCCTT GCAAGGCCAC AGGCATTCCT TTTCAGATCC ACTTCTACCT CCTGTTTGAG 001440 001441 CCATCAGATA AATGAGTAGG GTTGAGTCAT AACATGAGCC AGCCTGCTGA AAGAGGGAAG AGTTGATGCT CTCAAAAGGA 001520 001521 GATGTAGGAC TGAGCTGACA TATACCATCA CAAACCAAGA CAGGATATTT GGTGTTGGAT CAAAGTGAGT AGAAGATAAG 001600 001601 GCTGGATAAA GGAGGGTCAA TCAAGACAGA GCATTGTCCT GTGAAACAGG ATTTAACCCT GACAAGCAAC CTAGGAGTTG 001680 001681 GTGACAACAC ACTACAAGAT CTTAGAAGCT TGTAGAAAAC ATGGCCACAT TATGTGAGAG AAAGTGCTGG AACTTCCATG 001760 001761 GCAGACAGGA AAATAAAGGA TCAAAAGGTT AGGAAAATGT TCTAGAGTGA ATATACCCTG TTGAGTGCCA GAAAACCCAC 001840 001841 TCACCAATGA CAGACTGTGG GAGGGGCCAG AGGACACTGT TTAATAAAGC AATAAAGTCA TCGGGATGAG GGGCACCAGC 001920 001921 ATCTCTGTGA AGGTCAGTGT GGCTGTCCCC TGTGGCCTTG GGCTGATATT GGTGATACTA GTACAGAACT GGGCTCCCTG 002000 002001 ATAACAATGG GGATGATAGT GTCCTGCAGT GATAAGGGCA GATTGTGGGC TATTATTCTA ATGGCTGGCA AGTTTGGATT 002080 002081 GAAAGAGGGA GAGGTGTCTG ACTCACAGAG ATGTGAAGCT GGTTAATGGA ACATAGCATC TGTAGGGACA TCTTGGATGA 002160 002161 GCAGCCAATA AGCATATTAC TCAAATTATA CAATCAGGAT AAATCGAGGC CAAGAGGGGT GGCTCGCACC TGTAATCCCA 002240 002241 ACACTTTGGG AGGCCGAGGC AGGAGGATTG TTTCAAGATC AGCCCAGGAA ATGTAGTAAG ACCCCCCGCA TCCCTATAGA 002320 002321 AAATTTAAAA ATTATCCAGG CATGGTGGCA TGCATCTGTA CTCCAAGCTA CTTGGGAGGC TGAGGTAGGA AGATCACTTG 002400 002401 AGCCCAGGAG TTTGAGACTG CCACGAGCCA TGACGATGCA CGCCACTGAA CTTCAGCCTG GCAAAGAAAA GAAAAGAAAA 002480 002481 GAAATCAACC ACGGATCTTC AGGAGATTGA GACCAATCAA CCCAATAAAA ATGACCATAT TCTGCCTCAT TTCTGGATCC 002560 002561 GAGCCACTAC TCCGGCTAGG AACTCGTTAA CTGAAGGATA GACCAGGTCC CAGGAAGAAT TCTATCACCC ACAGCAAGTA 002640 002641 CATATGATAG ATTCCCCCAG TCCTTTTTCC AAAGGGACAT ATAGCCATTT GTGTGGGTGA ACTGGGGGAA TAGGAATTCC 002720 002721 TGACTTTTCA AGGGTTTGAA TTCACATTGA TACTAAAGGA TCCAAAGCAT CATCACATCC CCATTTGCCA TAGTTAGAGT 002800 002801 GGGCACATTC CACAAGCCAG GTAATAAATG CAGTCCTGGG TTCAACACCA GCTTGGGCAA CGTAGGGAGT CCTCGACTCT 002880 002881 ACAAAAAATT TAAAAAATAG CTGGGCATGG TGGCACACAC CTGTGGTCTC AGCTACTTAG GAGGCTGAGG TGGGAAGATC 002960 002961 GCTTGACCTC AGGAGGTTAA GGCTGCAGTG AATTATGATC GTGCCACTGC TCTCCAGCCT GGGCGACAAA GCAAGACCCG 003040 003041 ATCTCAAACC AAATAATAAA AAATTTGAAA AATTTTAAAA ACCAAGAAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT011731_smProtein_170:412 |
Length | 81 |
Molecular weight | 9660.4133 |
Aromaticity | 0.1125 |
Instability index | 52.4 |
Isoelectric point | 10.3860473633 |
Runs | 13 |
Runs residual | 0.0236842105263 |
Runs probability | 0.0418450124333 |
Amino acid sequence | MTLLFFKKLKYTKQMCNKKEKNNNNDLKRQEEIIHIKGKIIRKETTPRRLVPWILWPLTQ SPFRFKAVAGSNYWLLMAHS |
Secondary structure | LLHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHLLLEEELLLLLLLLLLLEELLLLL LLEEEEEELLLLHHHHHHLL |
PRMN | - |
PiMo | - |