NONHSAT011652
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011652 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3519 nt |
Genomic location |
chr10+:18967049..18970567 |
Exon number |
1 |
Exons |
18967049..18970567 |
Genome context |
|
Sequence |
000001 ATTTTTTATT GTTAATGTAA CTTAATTCCT TAAAACCTGG AATATTAATA TATATAATCT ATTAAAAGCT GAAGATTAAA 000080
000081 TATGTAATTT TTGCTTTTAG TTTCTTGTGT TAGTATGCTT AAAGGTATCA ATACTTTTAT TCTATATTCA TTAGAAGAAA 000160 000161 GGTAATAAAT TTAAGTTTCA TTGCTGAAAA ATTTTAAATG AGTGCCACCC CATAGCCATA GTCATTTTGA TTAAGCATAA 000240 000241 TTTAACTTTC ATTATAGCAT AAAGAGAAAA TAATTATTTT AGTATGGAAA CAGTGATAGG CAGTGCTGTA AACAATATTC 000320 000321 TCTGAAAAGT TGTGGGGGTC ACAAAGAAAA TTTTAAAGAA TATAGAAGCT TTTTTAAAAA ATCTTTTTAG TGTAGTTTCT 000400 000401 TAGAACAAAT TATAAACATA ATCATTCTGA ATAATCAATT TTTATTTAGT CCTTAACTAT GTAAAACCGT ATCAGTAGAA 000480 000481 AAATGTGCTG GTGTCGTGTC TAAAGATGGA TAAATTTCTT TGGAATTTAT CTTTGGAGAC CAACTTTATG AGGCAGACTT 000560 000561 TTTGTCTACA GCTTTGGAAC CAAAAAAACT TCACTCTAAT TCAGTCCTAA AGGCTATTTT ACATTTTGCC GGGGTAAAGT 000640 000641 GACTTCAAGA TACAGCATGG TGTCTTGTAT CTAGTAGAAT ATTGTGCTAG CCATCTAAAA AAGTGGATTT GAGCCTTAAT 000720 000721 TTGGCCGTTT CTCAATTGTC TAGTTGACCT TAGACAATTA GTGTCCATGG CTTTCCTTTT GTTTTTCCCA TACTGAGGAA 000800 000801 CTTAAACTAC AGCTCTAAAA TGTCTTTTGG TTTTAAAATT CTGAATGCTT ATATACTACT ATTAAAAATT AAAAATCCCT 000880 000881 CAAATAGTAG GGCAATACAG GTAATATGAA ATTAAATGTA TTTTTATCCA TTATTTGATT CCCACCTGTT ATTTTATTTA 000960 000961 GAATACGAAT ACAACCAAGT AGGGAAAAAC GTATCAGTAA CTGCTATTCA ACTTAAATTC AGCGAATTAA TAGCTGAATA 001040 001041 GAAATAGCTA ATGACAATGC AAAAGAGAAA ACAAGCCATA TTGCTAAGAA AAGGATAGTA AGCTGCTTAG AAAGAACCAG 001120 001121 CCTGTGTTGG AAATAATTCT CTTCTAGATA ATTTACCTTA TTTTCTTGGC TTGTACTAAT TGAATGGAAG TGGTTAATTT 001200 001201 GTTCAGAGTT TATTGCCGTT TGATGCCACC CCAGTCTATA GTTCTGTGTG ACTTTCCATA TTGAAAGAGT AGGGTTAGTA 001280 001281 GCCAGGTTGT CAGTCTTTTA CAAATGTCTA CATAAATGTC TACATAAATC TGAAAGTGGT TTATATTCAA GGTTAGTTTT 001360 001361 TCAGTAGCGT CTCCTCCTTA TTCATTCACT TTTACTGTGA AGACTGAAAT CCAAAAGCCA GGTTCCCCAA AAAAGTATTT 001440 001441 TTAAAAAATT TTAGGGGACC AAAATAAATA GAGGAAGACC AATATAAAAA AATATGTTCA ACTATTCCAT TTTAAATTTA 001520 001521 AAGCAGAAAA AAAAATTGTG CCCCTCAGAC CTAAAGGCAG CTTTAAATGT ATATAGTTTG GTGAAACATT TGGGAAATAT 001600 001601 TAATTTGGAG GTTTAGAAGC ATACGAAAAA CAAATTCAAA GCACTTGAAA GTAAAGACAA TATCATGAGG TCGAAAAAAC 001680 001681 TTCAAAAGGA TATTAGGTAA GAGAAAATGT GAATGAAAGC AGTGAATTTC TGCCTCTCCT CGTATTTAGG GTACTTAAAA 001760 001761 TTACTAAAAA ATACTGTCTT TTTACCATAC AGCTAGATGG CCTGTATTAT TCTTAATGTG GCCAAAGGAG TGAAGACTGA 001840 001841 TTAGGGTTTT AGAATTTGGA ACTGTAGTCA CATAAAGGCA TCTTTTGCAT TTCTTAAACC AGTAATCTAC ATTTTCTCCT 001920 001921 GGAAATGGAG AAATATGAAA TGTGCTGTGC ATAGCTTTTG GAATAGAAAA CAAAGTTTTA AAAGAATGGA TATGTTTTCT 002000 002001 TGCACAACTT GTAAAATTTT AATTAAAAAA TTACCTCATT TTTCAATCCA TAAGGTGCTT TGCTCAAGTT TGTGGGATGT 002080 002081 TTGTACCATC CCATAAAAAC CCCCTTCACC CAAACTGTAT TTGAAATATG CAAAATTCAT AACTAAGGGA TAGCATTCCT 002160 002161 TGGAGACTTT GTTTTGTTTT ACTCTTGTTT ACCAGCTGGG CCAACATGGT AGATATATGA GATTCACATA TGGTTTCATT 002240 002241 AAAGCACATA GGAAAGTGCT CAGTCAATAT TTAATTAGTT TAATTAGATA AGGGAAAGGA GAAATCCTAA ATTTGATGGA 002320 002321 TTCTTTTATA CTGTGAATAT ATTTCCATCA GTGTTGGTAA GATATCAAAT GACTATCAGT TGATCCCAGT CATCAGTGAC 002400 002401 TTATTTGCAT ATTTAAGCCC TATTCACAAG AGACCATAAT CATTTTAATC TTATATTTTC CCTCAGGAAA TTTAGGGACT 002480 002481 CTGAAGCCCC TATTTTATTC TCTTGGAGTA AACTGTTGAG TGTAGTTACA AAAACTTTTA TTTATGACTT AAAAAAAGTT 002560 002561 TAGCTGCTAT TTCAGTGAAA GTGTAAAATA AAACGGTCAT GATTTTTTTC AATTACAGAA TAGTTACAAA TTTTACCATG 002640 002641 TTCATCTATT CCACAGAGCA TGTTAAAAAC AACAACAACA AAAACCTAAC AGCAATTACA ACCTTGGTGT TGCGTTTATT 002720 002721 CTAATCAGAG TGAATGATTA TAATCACACT TTGCTATTTT AACATAAATT GGTGCTTTAG AGCATTAAAG AGGAAGCAGC 002800 002801 AGGCCCTGTA CTCAGTATTT ATTATTTCTT GCCTCAGAAT GCAAAACAAC TTTAAAGTGT CTATATTCAT ATATATGTGC 002880 002881 ATTTCTTAAG ATTTAAATAC AAACTGTTGT TACTCCTTAA GCTTCAGGCT TTCTGCGAAA GCTCTAAGAA TATCTTCATT 002960 002961 ACTATGCTTG GTCAACTGGA AGATGGTATT AATAAGGTCA GAATTAGGAA TTGGATTGCT CTGTGGGTCC TCCGGTATTG 003040 003041 TGCAGAGGAA AGAAAAATGT CTTTCACACC ACAAACTGTG TGTCTGAACC CCAGCCAAAC AAATGTGTTC CATTGGTCCA 003120 003121 ATATATAAGC ATTAACAACA ACAACAAAAA ATTTAAAACA AGTAAATTAA TGCATTCACA TGATCACTTC TTGAAAATGG 003200 003201 TTCAAAGCAT GTTTTCCTGA TGGTGGGATT GTTTAAATGA CATGTTTTAA AGTTTTTAAT ACTTTATTAG TTATGAAGTG 003280 003281 CTTCTTTTAT ATGTTAAGTT TAGGTTGCCA GTACTCATAA TTTTTATTTC TGCAATTATG TTATAATGAG TTGTTTGCAT 003360 003361 GCCTACTTAA CCCAAGTAAA ACGATGCTGT TTGCTCTGGA ATGTTCATCT TTTAGACAGG TTTTGGCTCA TTTCCAATCA 003440 003441 TGGTGCAATA TAGTGTAACA TTCATTTGTT TTCATTCAAC AGTTTTATTT TTGTCATAAT AAATAATTAC TTTTCCAAT |
Predicted Small Protein
Name | NONHSAT011652_smProtein_2963:3127 |
Length | 55 |
Molecular weight | 6408.3751 |
Aromaticity | 0.111111111111 |
Instability index | 58.7351851852 |
Isoelectric point | 8.84063720703 |
Runs | 8 |
Runs residual | 0.0145438121048 |
Runs probability | 0.0486221515634 |
Amino acid sequence | MLGQLEDGINKVRIRNWIALWVLRYCAEERKMSFTPQTVCLNPSQTNVFHWSNI |
Secondary structure | LLLLLLLLLLLEEHHHHHHHHHHHHHHHHLLLLLLLLEEEELLLLLEEEEEELL |
PRMN | - |
PiMo | - |