NONHSAT011111
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011111 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3094 nt |
Genomic location |
chr10+:4713638..4721519 |
Exon number |
2 |
Exons |
4713638..4713851,4718640..4721519 |
Genome context |
|
Sequence |
000001 cacgtatcac tgaagtctct gcttgcttag ctttgtggtc acctaatgat tcaaaagaca tttccgtaaa tgcctggaag 000080
000081 caatcagtct tctagccttc gctgatgggt tctgcatatg agttcaggca tgccttcagg actccaccag gcacttggta 000160 000161 attctgcctt atccttcact ttttgcttga gcagcgccga aaggtgagcc agagattttg cacacgggag aacatgaatt 000240 000241 tggggtgcca gctggtggaG TTTACTGGGT TAATTAGTGC CACCCTTCAg ccccctaaaa atgcctgttc aactggaacc 000320 000321 tgtgaatgtg accttatttg gaaatgggat tttttgcaga tttaatgatg aggtaatcat ggattagagg gatctataat 000400 000401 ctaatacatg gtatctgtgg tttcctcata ggagggaaat ttggacatgg acacataggg aagacagcca tgtggagaca 000480 000481 gaggcagagg tggacctgct gccgcaaaac cacagggcgc caagtactgt gggccactga gaaaactaaa ggagaggaag 000560 000561 gattcttccc tggagctttg gagagggtgc ggccctactt tcacctggat ttcagacttc agacttccag aaccatgaag 000640 000641 gaataagctc tctttgtttc aaaaccactc agtcaaggca ctttgttaca acagcctagg aaactaatac aGGAATTGGT 000720 000721 ATTagtaaaa tcattattgt tggctcatat gaccatactc atagaacttt taagataata tgtaaataag caactaaaac 000800 000801 aaaaagtcag aaagctttat ggtgccagat caatatacaa ataaatatca ttattttcca ataaaaacaa ttatataatg 000880 000881 taacaataat aaagtaataa tacaaagaaa cttcccataa tagctaccaa aaattctaaa gtagttataa ctagttttta 000960 000961 aaaataatat gttcagaaat tttatataaa caaatataaa ttttaagtta aaaagaaaaa gaaatggata aatacatcat 001040 001041 TAATGAAGTT TCAATCAAAA TTCATACATG AATATTTCAC AGAATTTGAC AAGTATATCT AAAAATTATT TTAAAGGAGT 001120 001121 AAAACGAGCT TGGAATTATT TGAAGAAGAA AGTATTTATC CTTTTGTATA TTAAGAGTTA GCCTAAGTCT CCCGGGACTC 001200 001201 AATGGTATCA CCTCTCTAAC AAAAAAGGTC ACAGAGATAT GAAAACACAT CATAAAAAAA TCTATCGTTT TATCACACAA 001280 001281 TGATTTGATC ACCTGTGCAC ATGGAAACAA CCTTATTTTA AATCCTTGTT TAGAGTCAAT TTTAAGGGAT AATGTTGCAT 001360 001361 GTGAAGCTCC ATAATCATTC TTTTGTGTTA AGTGGTTGAG GAAAATATCA GGCTGGTGAG ATGTTAATTA TAGGTCCAGG 001440 001441 GAATAACTTG AGTTAATAAA TCAGAGATGA GTCCAAAGTT CTGTAAACAA GTTTCAACAT TTCTGGGCAC CTGAGATTAA 001520 001521 GCACAGCTCT GAGAAGTGCT CCACACGTTC CTAAGTATAT GATGCAAGTT TTACTTTGGC AAGAAAATGT AACTATATCT 001600 001601 AGTACCCACC TTAGGAACAT GAATGACGAA ATGGAGATTT CACATTTGCC AGATGAATAG GACTAATGTA GAAAAACAAA 001680 001681 TCAAACTGTC CTTTACTCTC AGTCAACCCC CTTCTCAATA ACAAAAACAT CCACATATCC ACATTGTCCA TCTATTTTAA 001760 001761 GGTCAATATA GTATGGATAT TATACCAACT TGCAAAAATA AATTAAACCA CTTACCACAG GTATCCTCCA ACATCATTGG 001840 001841 CACCATTAAA TAACATTCAT TCAGAACTAC TTTTAGTGAA TGTAGATACT TAATGtttac agacgaggaa atctgaatgg 001920 001921 tacgaaacaa acagagactt gttcaaggtc tcacactgac tcagcagcaa agTCCACATA GGAAGTGAAT GTTCCTGAAG 002000 002001 TAGCACATTT TGTTTGGACT ACAAGACCAA CTGAGTTATT ATCTTTATTT GAAAATGATT CATGCAAGTC TGCCACAGAT 002080 002081 GAAGGCAAGC TGTGGAATTC TTACTCAAAC TCTTTGTTGT TATTATGGGA AAGCTTCAAG TCTGGGGTTT TTTGTTTGTT 002160 002161 TGTTTAATAC CTCATATTtg ttatccgaaa aaaacaaaca gcgttcattc acctgtcaag caacaaacga ctctccacga 002240 002241 gaatgcagat tttgatcaat aggagtttta ttacttggct caagtaaggg gagcactggg tgtattctcc aaagcagtgt 002320 002321 ctccctgagg gaaagtggca ggagggtttt atggggtgat ggagagggga gagggtgcat tatcgcatgt agatgagggg 002400 002401 tcccagcggt gcagacacag tgtcatcatg gcaacacatg ggttacatgt tatgataacg gaactacagt tcctccagga 002480 002481 tggagacgtt acagtcatga ggaagattca ccagggttca tctctaagtt gccagggtct gtcaggagct ggtttcaacc 002560 002561 aactaggtta ctatagtcca cccagggttt agggaagaac aggctgcagg gcaggaagct gtaaatcagg ctgatggctc 002640 002641 acgtggatta aactcctatg gttcctagag accctccttg tctgcttata tATCCTAGAA CTGAAAAATA AATTGAAAAG 002720 002721 TGAAGTGGTT ATGGTGGTCG CACTTCTGAA TTCTGGTATG CCCCTCCTAC CTCCCCCTAC TAAGTAAAGA AAGATAAATC 002800 002801 AGTCGTCTTA ACAGTATTTA AAACAGCCCT TCCCAAAAAC TCAATACATG AAACTTTCTT TCTAGTTGAT CTTTGTACCA 002880 002881 AATGATCTGG CCAATAAAGG AATAAAATCT TTGAGCTCAA ATAACCATGA AAATGCAATA CCCGATTTTC CTAAATGCAC 002960 002961 TTCCTAATGT GAAGGCCATT CACAAAAGCA AATATCCACC CCAGATTCTA CTGGGTATGA AACATCTCAA TGACTGATAC 003040 003041 TTCATCTTAT CACCTGAAAA TTAAATAATT TTATTACAAA AAGAATTAGT AGAT |
Predicted Small Protein
Name | NONHSAT011111_smProtein_2054:2254 |
Length | 67 |
Molecular weight | 7440.5621 |
Aromaticity | 0.121212121212 |
Instability index | 55.246969697 |
Isoelectric point | 8.86444091797 |
Runs | 11 |
Runs residual | 0.0160587915079 |
Runs probability | 0.0845658492717 |
Amino acid sequence | MIHASLPQMKASCGILTQTLCCYYGKASSLGFFVCLFNTSYLLSEKNKQRSFTCQATNDS PRECRF |
Secondary structure | LLLLLLHHHHHHHLHHHHHHHLLLLLLLLLLEEEEEELLLEEELLLLLLLEEEEELLLLL LLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL LLLLLL |
PiMo | oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiii iiiiii |