NONHSAT010379
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT010379 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1140 nt |
Genomic location |
chr1-:235992709..236030176 |
Exon number |
3 |
Exons |
235992709..235993724,235996878..235996967,236030143..236030176 |
Genome context |
|
Sequence |
000001 GGAGTGCGCG GCGGCCGCAG CTGCCACAAA CCAGGTGAAG CTTTGTTCTA AGAATATTTG TTTCATCTAG TTTATGAGTC 000080
000081 CAAATGATAT AGACTGTAAA TGTCACAGCA GTGGTGAAAG ACTGCTCGGT CATGAGCACC GACAGTAACT CACTGGCACG 000160 000161 TGAATTTCTG ACCGATGTCA ACCGGCTTTG CAATGCAGTG GTCCAGAGGG TGGAGGCCAG GGAGGAAGAA GAGGAGGAGA 000240 000241 CGCACATGGC AACCCTTGGA CAGTACCTTG TCCATGGTCG AGGATTTCTA TTACTTACCA AGCTAAATTC TATAATTGAT 000320 000321 CAGGTAACAT TTTTATATCA AATACTTACT TTCATCAATA TATGATAGTT AACTGTAGCT ACATGGTTTT GGATTACATA 000400 000401 GTTTCTGAAG CCTCCTTGAG ATAAAGTCCA GTCTTTCACA TTATTCCACT AAAAAAAAAG TGGACCTATT TATAACCATA 000480 000481 TTGTTTATTT GAATACTTTC AAAACGTCTG AAATATCTTA GAATTATGAA TTGCCTAAGA ACTAAATGGT TTCATATATA 000560 000561 CTATGCTTTT TATCGTAATA TCAGTGAGAT AACTATGGTT CTTAGTAGAA ATATAAGACA TAATCTTATA TCCCTGTATC 000640 000641 TTATGTCAGA AACATGATGA ATTTTCATTT TCAATAAATA TCAAGTATGT TTTTGAAAAA TTTTTGGAGG CTGCTAATTC 000720 000721 TGGAGTGAAA GCAGAGACCT CTTATGTGAA CTAATAATTA CTGAGTCCTT TAGCTTGTAT ACATCTAATT TATCAAACGT 000800 000801 TTTTGGCTTA AAGTATGGTA TGACCATATG GTTTTGCTGT TTTCTTatta taaaattaac agagttttaa aactagttga 000880 000881 gactagatgt tttcatctaa ccttctttta cagatgagaa aacagatcca gaaacattaa gtactcacat aaATTAATTT 000960 000961 TAAGGCCAAA TGTGATTTAT ATCTTTATTT CATTTTAGTA GAAAATGAAT AATTATTTTG TGATCGTAAA ACTCTACAAT 001040 001041 CTGCTTTCAG GGAACTAATT AATATAGTTA GTTGAAAAAA TAATGAAGTG TTTGTAACAC CAATATGATG GATTTTTTTT 001120 001121 AACACTTTGA ATGTTACCAG |
Predicted Small Protein
Name | NONHSAT010379_smProtein_131:364 |
Length | 78 |
Molecular weight | 8859.9848 |
Aromaticity | 0.0779220779221 |
Instability index | 45.6493506494 |
Isoelectric point | 4.77081298828 |
Runs | 10 |
Runs residual | 0.00621118012422 |
Runs probability | 0.0144409114998 |
Amino acid sequence | MSTDSNSLAREFLTDVNRLCNAVVQRVEAREEEEEETHMATLGQYLVHGRGFLLLTKLNS IIDQVTFLYQILTFINI |
Secondary structure | LLLLLHHHHHHHHHHHHHHHHHHHHEEELLHHHHHHHHHHHHHHHHHHLLLEEEELLHHH HHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |