NONHSAT009956
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009956 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
564 nt |
Genomic location |
chr1+:228264262..228264825 |
Exon number |
1 |
Exons |
228264262..228264825 |
Genome context |
|
Sequence |
000001 GTTGGAGACA GAGTCTCGCT AGAGTGCAGT GCAGGCTAGA GTGCAGTGGC ATGATCAGGG CTCACTGCAG CCTCGAACTC 000080
000081 CTGGCCTCAA GTGATCCTCC TGCCTCAGCC TCCTGAGTAG CTGGGAGTAT ATATACATCA AGACACTCAG CTAAGTTTTT 000160 000161 AATGTTTTGT AGAGACGGGG TCTCACTATG TTGCCCATGC TGGTCTCAAA TTCCTGAGCT CGTGATCCTC CTGTCTCAGC 000240 000241 CTCTCAATGT GCTGGGATTA CAGGCTGAGC TACCATGCCT GGCCACTTTG ATTTTAGTGT CCTTCTCTGG GGTAGTGAAA 000320 000321 AGTTGACCAC CCTATAGGAG TCCCCAGTAT CATTTTGAGA CATTACTGCT CCGTGCAGCC CCAAGCTGGG AAGGTCACAC 000400 000401 ACAGAGTGAG TCTGTGATGC ATCTTGGAGA CAAGGCCCCC AGCCCAGGCG TACCTCTCCT GCTAGCCTCT GCCTGGAAGC 000480 000481 TTGGAAGGTG AAAAGGAAGC CCTGAAAGAG AGGTGCAGAC CCCAGCCCCC TAAAACCTGG AGGTGGGTCT CAAGAGAAAA 000560 000561 GCTT |
Predicted Small Protein
Name | NONHSAT009956_smProtein_161:325 |
Length | 55 |
Molecular weight | 5805.9775 |
Aromaticity | 0.0555555555556 |
Instability index | 48.1296296296 |
Isoelectric point | 4.67694091797 |
Runs | 10 |
Runs residual | 0.0224932249322 |
Runs probability | 0.0558823529411 |
Amino acid sequence | MFCRDGVSLCCPCWSQIPELVILLSQPLNVLGLQAELPCLATLILVSFSGVVKS |
Secondary structure | LLLLLLEEELLLLLLLLHHHHHHHLLLLLLLLLLLLLHHHEEEEEEELLEEEEL |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | iiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTiiiii |