NONHSAT009563
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009563 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1826 nt |
Genomic location |
chr1-:219781303..219783128 |
Exon number |
1 |
Exons |
219781303..219783128 |
Genome context |
|
Sequence |
000001 CTCTGCCTCA ACAGGAAAGC CCCCACTCTC TGTGGAGGAT GATTTTGAGA AACTAACATG GGAGATTTCA GGAGGCAAAT 000080
000081 TGGAAGCTGA GATTGACCTG GATCCTGGGA AAGATGAAGA TGACCTTCCG CTTGAGCTAT GAGAAATGAT TGATAGCTGA 000160 000161 AGGTGGTAGT GAGGACACTT TAAAAAAAAA TCGCCAAAAA ACTGGACTTA GTTTCATCTA TTGTAACATT TACCTGAGAT 000240 000241 GATCATTTCT TTAGTCTAGA ATTTGCCCCA AATCAGAAGT ATACCTCTGA ATTATCTGTA TGTGTCCTGG ATTCCTTGGG 000320 000321 GTCAGATTTT TAAAGTTACT TTATAACCAT TTTGTCCATT TGATGCCATT GTTTATCATC TTTTGAGAAA AAAGTTCTGT 000400 000401 CATACCCTTC TCTCCACAAA AAAGAGACTG AGGGGGAGAT CAAGTGAAAG GGTGCAAGCA AACTTAGTGA CTCCTTGAGG 000480 000481 TGTTTGTCAG TTTTGGCTTT TTTCTCCTTT GTTGTATTCT TTATGTATTG TCTTAATGTA CTTAATATTA CCTGAGTTTG 000560 000561 AAATGGATGA AGACAGCTGC TACCATTAAG GGCCAAATTT TATGCTACCA CTAAACAAAA ATACCCACTC AGTCTGTGTT 000640 000641 AAATTGTATG TCTTTTTAAA GGTATTTAGA GATTCAACTA AGCTTTAAAG AGGGCTGAGC AACTCAGGAA GCCTGTAATG 000720 000721 TGGGCATAAC TCTTTGGACC TGATCTTGAT GCTTCTGCTG CTCTGTTGGC CTCTGAAGAG CAATATCTAA TTTATTATTA 000800 000801 CTGTAATTTT TTAAAAGGCT TTAAAGTGCC TCAGGGGTCC CCTGAAACTA ATTTTCTATT TCTGGGATTC CCTGGATTCA 000880 000881 TTATATGAGA TGGTGACATG ATTAGAGGAA TTCTTTTTTA GTATGAAAAT TGTTCCTTTT CTTCTTCAGT ACTTGCCTCC 000960 000961 TTGCTGGCAT TGAATTAACA CAGGGACAAA ATTTGGTTAA TTTTTTATTT CTAATTCTCC CAACAAACCC CTGTTGCCCA 001040 001041 GTATTTATGT GGTGGCCTTT AACCACCTGA GGGAAAAAAT GAGCTTATTC AAGCTGCCAA TATTTATCTA TGGGCTGTAG 001120 001121 CAGTACACTG AATTGTACTG TGCCAGGGAT ATTGAGATGC TCTGGGGGTG TATTGTATAC CTGCCAGTTT TCTTCATTTC 001200 001201 TGAATTGGGT TTTCTCTTCT TGATGTTGGT TTCCTTCATA TCACCTCAAG GTTTAGATTT GTGAAGGAAT AAGCATGATG 001280 001281 GAAATAATAG TCTTGAAAGG AGATATGTTG TATATAATCA GGAGGAAGAG GAAGGCAGGA CTTACTCATT TTGATATTTT 001360 001361 GCTGTAGGTG GCCAGTTTTG TTTCTCATAG GGAAATCTGA CCCACCTGTC ATGTTGGCTC CTAAGGAACT GCTGTTGTAA 001440 001441 GCGGCTCATC AAGAGTTGAA CTTCAAGTAG CCTTGTTGGG AATATGGAAA AGGAAGAAAG CCACAGGACT GCCCATTCAG 001520 001521 TCTTGTTAAG ATTGGGATGA TTCTGCACAA GCAAAAATGA CTCGAAATTT ATGTATCGAC ACACCTCTAC CAATCCATCT 001600 001601 TCAGCTGACT GAATGTTGTA TGATAGCCCT TCTCCAAAGC AGGGGTAGAA TGTTCAGGTT TCACCACGGA TTTTCTACTT 001680 001681 ATTTCGCTTT TGGAATCAGC TTACAGATTC CAGGTCCCTT TTGTATATAT TCTTTATTCT TTTGCTTTTT TAAAAAATAA 001760 001761 ACTTGTATTA GTCAATGTTT CGTGTTCCGC ATTATTTGAA CCATTTGCCC TTACAGAAAG AGAAAT |
Predicted Small Protein
Name | NONHSAT009563_smProtein_1556:1759 |
Length | 68 |
Molecular weight | 7856.3521 |
Aromaticity | 0.179104477612 |
Instability index | 48.1835820896 |
Isoelectric point | 9.03924560547 |
Runs | 14 |
Runs residual | 0.0656403844651 |
Runs probability | 0.0163083251318 |
Amino acid sequence | MTRNLCIDTPLPIHLQLTECCMIALLQSRGRMFRFHHGFSTYFAFGISLQIPGPFCIYSL FFCFFKK |
Secondary structure | LLLEEELLLLLLLLHHHHHHHHHHHHHHLLLLEEEELLLLHHHEELEEEELLLLEEEEEE EEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH HLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTT Tiiiiii |