NONHSAT008663
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008663 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2712 nt |
Genomic location |
chr1+:198860009..198862720 |
Exon number |
1 |
Exons |
198860009..198862720 |
Genome context |
|
Sequence |
000001 TATACATTGG AGCATTAAAA TAATATGAGA ATGCACAGTA TCTTCTGGTT ATCATAGGAA CATTTGAATA AAAGTGATCA 000080
000081 AACGCTTAAA CATAACACAG AATCAGTGTA ATAGAAAGAT ATTATAAATA CATTGCAAAA ATATTTTTAA CAAGAAGAGG 000160 000161 ATATTAGAAA TTAGAGTCAC TGAATACAAG GCATCAGAAA TCACTTAAGA TGAACTATTA AATTGTGTGT GATAGAAAAA 000240 000241 GAGAATAAAA AAAGAAAGAG AATAAGAGAG AGGAGATTGA GATTTAATCA CTATGAGTGT AAAATTCCAG AAGAAATAAT 000320 000321 TAAGCAAGGA GAAATATTAA ATTTAATTGG AAATTAGGTC AAATAAAAAT ATACAATGGA AAACTTTGCC ATATTTTAAA 000400 000401 AGAATGTAGG GAAGAGGGAA AACGGaaata aaaaataaaa ttataaacta aatcaaaatc ataattaatc atatttttGC 000480 000481 AGAGCTTTCC TGTGAATCAA AACAATCCTC AATCTGTTCT GTAGCAAGAC AGTTTAGTTT CTTGGAGATC ATTGGCAATC 000560 000561 ATTTTGATTA CCAAAGTAAT TGTAGGGCAG TACTAAAATC CATTTCATTC TTAATTTGAT GAACAAAAGA CACTAATGCT 000640 000641 CTTAAAATGA GAATAACAAT TATTTGTAGC CATTTCAAAG ATAAATTTGC AGTAAATCAA TCCAGCAGTC ATCCCTTTGA 000720 000721 TTATTTTTAA AGAATAAGAG AAATCTGAAT AAAAAATATA TAGATTTATC AGCTCAAAAA CACAAAATAA TTTTAGGCAT 000800 000801 TTGGTGACAC TAAAATGCAG TTAGATTTGC CCAACATTTA ATATTTCTGC TCTTCTTTTG GAGGTCTCGA TTTCTAGAAA 000880 000881 ATTAATAAGT ATCTGAAAAT CTCTGCTAAC AGAGGTGCTA CGTGGGCAAA TACAGAGCAG GATGATTCTC ACAATACTTA 000960 000961 CTTTCTAACT CAAATTAATT AATTCTCTTC CAATGATTTA AATAGGAGCA TATTTTTGGG TAAGTCTTCT TCCGTGTTGA 001040 001041 TCATTTGAGA AAATGATGGC AGAAGTGAGT ATGAGCAGAA TGAGGTTTAA TTCTCTAACA TACTACTCTA TATTTAAAAT 001120 001121 GATTAAATTT GGAATATGAT ATCATTAAGA GAAAGACAAC ATTAACACCT GTAAGTTGTT CAGATTGTGA CATGTTGTAC 001200 001201 ATTTGTGTAT AATTCCAAAA TGTGGTTGCC ACAAAATAAT GTGTTCACCA ATATCCAAGC TTTTTGAGCT GCCAGAAAAT 001280 001281 ATCAAAACAA TTGGTGCTCT TTGGAATGTG TAGTTAACTT CCTGCTAGGA GAGGAGTCAC AGCTGCTACA GTAGCAGTGG 001360 001361 GTTTCCAGAT GTCAAGGCTG TGAGGATAGT GAGGTAATTG CAGGAAGGAA GGGATACAAT TTTGTTATTA CAGATTACCC 001440 001441 TCCCCATTGA AATCTCTGGA TACAGCATTA GTATCAGTGC TTTGGATATG CACATTGTGA ACTGGAGGTC TTCATGTTGA 001520 001521 AGTGTAGAGG TCTGTGCATT TGCTTCAGTC GAAAAAGCTG AGCCAGGCTT ATTAAAATTT GTGGGAAACA GAGTAAATGC 001600 001601 TCTCAAAGCT GTATTATTGG ATTTATAAAG CATCCATAAG TGTTAATATG TTTTATCAGC AAAAGTTGGT TTTATAAGGA 001680 001681 CAATAACCAA ATAACAAAGT TTAGCTATAA ATGTTCCAGT ACTATAGCTC ATCCACTGAA TTAAGAGAAA ACAAAATGTT 001760 001761 TAGATACCGA TAAATTAATC AGCAAATCTG CTTAAGTCCT TCTTTGTATA CTAGTGACTG AGTAGAGGAA ACAGATGATG 001840 001841 ATTTTTCCAG TATTCAACCT AGAAGAATTT CTTTCTCAAC TTCCCATGCT ATGTAGTCAG AAGAGTACAA ATTACTGAAA 001920 001921 ACTCTGTTTT TCATTCAGAA GCTACAATCA TGGTGCCATA TTTCCATATG GGAATTTTAA ACACTACAGT ATTTTGACAT 002000 002001 ATTTTATTGT CAAAACCAAT ACATATTTGT CCACACAAAT TAAATTGAAA TTAATTGAAG AAATTCAGTT TGATAATTTC 002080 002081 TGGTGTTTTT TTTTTTCTGT TGAGGGGTCT GTATTACTTA TTGTACTGAA TGTACATATT AGCTTAAGTT TCTCTGTAAA 002160 002161 TGAATGAAAT AATTGGTGCA TTAGTTTCAC CTAAAACAGG CAGGGTTGAG GATATTCTGA GACTTATGTG AAGTTGACAA 002240 002241 TTCTGGATTC ATTCTACCAG CCATGAAGAG AGAGACTTCT CATCTCACTC ATAACAGATa caccatcctc tgctgaaact 002320 002321 ctaagctttt catagttttt gagggcagtt acatatcact attgaatcac actgagctat tcatggtcaa ctaatagcca 002400 002401 aaagtcccat gtgccattct tatttcatgt ctcccacatt ctatggaatt ttgaagttaa ggctagaact ttatgcctgt 002480 002481 cttgctaaac ctgacctATT ATATCTGACT AAGGCACACT GGATTGTACA ATTCCAGAGA GTGCCATTCC TATCATTAAC 002560 002561 TCATAAGTGT TCTTTCTGAA GTTACACAGC CTCTATGGCC GCAGGTGGCC TTGTCTACCT TTGAATTTTG CTTTTAAATC 002640 002641 ATGGATAATT TATTCACTAC AGCAGATGTC CTCTAGTTTA ATTAATAATA TACCTTAAAT TTAATAGAAT CC |
Predicted Small Protein
Name | NONHSAT008663_smProtein_2408:2578 |
Length | 57 |
Molecular weight | 6670.9507 |
Aromaticity | 0.178571428571 |
Instability index | 59.2108928571 |
Isoelectric point | 9.21844482422 |
Runs | 8 |
Runs residual | 0.0104410616706 |
Runs probability | 0.0441397279632 |
Amino acid sequence | MCHSYFMSPTFYGILKLRLELYACLAKPDLLYLTKAHWIVQFQRVPFLSLTHKCSF |
Secondary structure | LLLLLLLLLLHHHHHHHHHHHHHHHLLLLHHHHHHHLHHHHEEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |