NONHSAT007801
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT007801 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3770 nt |
Genomic location |
chr1+:177975567..178003938 |
Exon number |
12 |
Exons |
177975567..177976546,177976746..177976793,177976812..177976953,177977194..177977284,177985627..177986644,177991575..177991805,177991843..177992030,177992927..177993111,177994048..177994543,177995289..177995390,178000685..178000874,178003840..178003938 |
Genome context |
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Sequence |
000001 TTGGAATATT CACATTATGC CAGTTGAGCA TCCCAAATCC AAAAATCCAA AATCTGAAAT GCTCCAATTA GCATTTTCTT 000080
000081 TGAGCATCGT GTCGGCATTG AAAAAGTTTC AGTTTTTGGA GCATTTCTCA TTTCAGATTT TGGATGTCAA CCTGTACTTT 000160 000161 CTGTTTCTAT GAATTACACT ACTCTAGGTA CTTCATATAA GTGGAATCAT ATAGTATTTG TCCTTTTCTG TCTGGCTTAT 000240 000241 TTCACATATA ATGTCTTCCA GGTTCATCAT ATTGTAGCAC ATGTCAGAAT TTCATTCCTT TTTAAGGCTG AATAATATTC 000320 000321 CATTATGTGT ATACCACATT TTGTTTATCC ATTCATCCAT CAATAGACAT TTGGGTATTT CCAGGACAAT ATATTCTTAA 000400 000401 TTTAATCCCA CATTTTAAGA CTTACAGGTA ATTTAAATTC AATTCAACTT ACTGAGTATT TACTAAGGGT AACTCACTAT 000480 000481 GGGAAGTACT GTGGGAAATA CAAGGGTAAA TAAGACATGG TGCCTGCTCT CAAGGAAATT ATGATAGACT GGGAAAAGGG 000560 000561 AAGAGAAAGA AGTAGAAGTA ACCAGCATTT GCTAATCGCT TGCCATGTGC CAGGTGCTTT ACCCAATCGC TGCATGTATA 000640 000641 GCTCCCAATG ACTCTGTAAG TTAGATATTG TAATATCTAC TTTATATAGG AAGAAGAATG AAGGCACTGA GACTTTAAGT 000720 000721 AACCACCTCC AAAGCTGGGA TTTAAACTCG TATCTTGGAT TCAGAGGCCT GTGTTCATTC CACTACACAT GCTGTTCCCT 000800 000801 ATGATTCAAG GCAGAATGTG ATAAATCCTT GGGGAGAAGC TACAGCAAGG TAGAAGAGGA AGAGAAGAGA TTGCTCCTTG 000880 000881 CCTGAGGGTA AAGGTACATG ACAAAGGTAG GTCTTAGAGG TCAGGAAGGC TTACGTTTGA CAGAGATGGA GGGTGGAAAA 000960 000961 AATTGCACAA GCAGAGCAAA ACGATGGCAA TAATGCATCA CAAGGATGGA GGGGGTGAGA ATAGCTTAAG AAGGTCACTG 001040 001041 GTAATAGCAG TTGAGGCTTA ATTAGTCAGA ATGGAAAAGA GGATATGGAC ATGAGAGATA TCTTAGAGGT GAGAATGACA 001120 001121 GAACTCGGCA ATCACCGCAT TTCATAATGC ATCAAGTAGG CTGACCATAT ACTTTGCTGC TCAGGCAAGG ATTTATTTAA 001200 001201 GAGCGAGAAG CACCTTGCCC ACGGATTTCC CCTGTATCAC ATGAAGGAAG GCATCATTGA CTTTTTTTTT AACTGTTGCT 001280 001281 GCTTTAAAGT CTGTTTTGCC TGTAAGAACA GCTACTCCTG CTCTCTTTTG GTTTCTATTT GTGTGGAACA TCTTTTTCCA 001360 001361 CCCCTTTACC TTGAATTTAC ACGAATCCTT TTGTGTTAGG TGAGTCTCTT GAAGATAGCA AATATTTGGT TGGTGGTTCT 001440 001441 TTATTCATTC TGCCATTCTG TATCTTTTAA GTAGAGCATT TAGGCCATTT ACATTCAATG TTAATATTGA GATGTGAGGT 001520 001521 ACTGTTCTAT TCATCGTATC AGTTGTTACC TAGATACTGT TTTTTTCATT GTGCTATTGT TTTACAGGCC CTGTAAGACT 001600 001601 CACGCTTTAA GGAGGTTCAA CCCTGGCCTA CAGAATTGGG ATAGTTTCTA AAAGGTAAAA ACTTTTGGTT AGCAGGATGT 001680 001681 TGTCATAGGT GAATTATATT CATCACATCA TTGATCTAAG TTTATCTAAA TCTTAGATAC CACTACAAAC CTAATGAAAT 001760 001761 GGCTAACATT CAAGGAAACA ACTGACAAGA CTAAGTTTTG GCAGATGCAG AGCAACTGGA ACTCTCACAC ACAGGGAATG 001840 001841 CAAAATGGTA CAAGCACTTT GGAAAATAGT TTGCCAATTT ATTAAAAGCT AAACATGTAG TAGCAAACCA GTGCAAGCAA 001920 001921 ACTCCCAAAG TGTTGAAACA GAGAGCTCAA CTTTGGGCAC ATTTGTATGC CAGAGCACCA GTTTCTAATC CAGAATACAG 002000 002001 CCAAAGAAAT GGAAAACCTG TGTGATACGG GCTTTGATAG GAATGTAGTA ACAACAGCCT TCTCTTCAAA ATCATAGGAC 002080 002081 ATAGAAACCG AAACAGAATT GTTTCTGAAT AACTGAGGCA TAGAGAAACA GCTGCTGATA TAATCGAAGT TGCCTCTTTT 002160 002161 TGAAGTGGCA TCAACATCTG CTCTTTTTAG AATTCTGCAC GGATTTATTT TAAAGTTATC ATTCGGTAGC AGCTACAATT 002240 002241 CAATCCTTGC CTTATATCAT TCTTGCTTCA TGATGTTATC TCGTCCAGCT TGAAAACCAT TCTGACATAT AGCTGGATGC 002320 002321 ACCCTTGCTG GCAGTACTGA AGCACTGAAG ATAGGCTCTT GGAGAAGACG GGAAAGTTCA TATCTTTGTA TTGACCACAG 002400 002401 TACAGGCCCA TAGCAGAGAT ATTCTTCAGG AGCAGAAGGT TGGCTGGTTC AGAAGCAATG TTTCCTCCAG CAAATCCCAC 002480 002481 CACCACAATC CTGCCCTCCC ATGCCAGGCT GCAACATACA TTCACACCCA TTAGGAAGGC TAGTCTCGTA AAATAACAAG 002560 002561 TGACAAATGG CGAGGATGTG AAGAAGTTTA AGCACCTGTG CACTGTTGGT GGGATTATAA AACAGTGCAA CTACTATAGA 002640 002641 AAACAGTATG AAGGTTCCTC AAAAAATGAA AAATAGGTTC AGCAATTCCA CTTCTGATAT ATATATATAT ATACACATAT 002720 002721 ATATATATAT ATACCATAAG CAAAGTATTA GGGAACCAAA GGAACTAGAC AATTTTATAA GGGGGCCCAC TTAAAATCCA 002800 002801 GGCTGTTGAG CCAGGTGCAG TGGCTTAAAC CTATAATCCA AGCACCTTTG GAGGCCAAGG CAAGAGGATC ATGTGAGCCC 002880 002881 AGGTAAGAAG AAATACACTT TAATGAGGGA AGGACCATTT GCTTTATACA AAGACTTACT TTAGGATTCC TTTAACACAT 002960 002961 TGCCTCTTTA GAGAATTTTA AATAAACTAC AAAAATGCAT AAGTATTCTG TAGCCCAGTA TGAAAATTCC CCTACGGTAC 003040 003041 CATTGCTAAG CAATGAGTTA CAGAAACAAC TTTTGCAAAC ATCTTTGATA TAAAATATGT GTATATTTGT TTGGCTTTTG 003120 003121 CTTTTTGCTT TTCTTCTTTA GAAGGGAAAT GAGAAGCTAT TGCAAAAACA CAATTATCCA GAAGGCAAGA AGGAAGGCAA 003200 003201 GAGATGGGCG AGTTTTACCA GCTGTCTATC CTGGCTTTCC ACTTGGACTA CACGCTCCTT CCTTTGCTTC TCCTCTAAGC 003280 003281 ACAGCACCAG GCACAGTGCA GAGATGAACA AACATATAGA CTGCCTGCCA CTCAGCTCAG GGGCTAGAGA ACCAACTGGA 003360 003361 CCCCTTTTGT GGGTAGGCTC TGCATCCTTC AGGCTGCCCT GACTGTAGTT CACGCTGGAC TGCGCACCCC TCTGCATCGC 003440 003441 CAGCTTGCAC TTCTCGTCAC TTCCAGCAGC AGCTATATTA CCCCAGGCTG GGTACGGGCC CAATGCTCAA GAGCAAAAAT 003520 003521 CGCAGTGCCA TAAGTTATAG GGAGGACAGC AGCTTCTTAT AGGGAGACCT TTTCTGGAAT CTGCCACAGG TCCTAAAAAA 003600 003601 GAGATAACAG TGACTTACAG ATTGAGTGTA TGTACCTAAG TCGTAAAGGC TGCTCAGTAA ATATTAGGAT TCAGGTGTGA 003680 003681 AGGGAAGATG GGGCCTTTCC TGATATTGAT CACGGCAGAT CAAAATATCA CCAAAGTTAA CTCCACAGAA ATGGACATCA 003760 003761 ACTCTGACCT |
Predicted Small Protein
Name | NONHSAT007801_smProtein_983:1060 |
Length | 26 |
Molecular weight | 2692.0822 |
Aromaticity | 0.0 |
Instability index | 101.968 |
Isoelectric point | 6.69989013672 |
Runs | 6 |
Runs residual | 0.0316981132075 |
Runs probability | 0.0421598068658 |
Amino acid sequence | MAIMHHKDGGGENSLRRSLVIAVEA |
Secondary structure | LEEEEELLLLLLHHHHHHHHEEEEL |
PRMN | - |
PiMo | - |