NONHSAT007801

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT007801

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3770 nt

Genomic location

chr1+:177975567..178003938

Exon number

12

Exons

177975567..177976546,177976746..177976793,177976812..177976953,177977194..177977284,177985627..177986644,177991575..177991805,177991843..177992030,177992927..177993111,177994048..177994543,177995289..177995390,178000685..178000874,178003840..178003938

Genome context

Sequence
000001 TTGGAATATT CACATTATGC CAGTTGAGCA TCCCAAATCC AAAAATCCAA AATCTGAAAT GCTCCAATTA GCATTTTCTT 000080
000081 TGAGCATCGT GTCGGCATTG AAAAAGTTTC AGTTTTTGGA GCATTTCTCA TTTCAGATTT TGGATGTCAA CCTGTACTTT 000160
000161 CTGTTTCTAT GAATTACACT ACTCTAGGTA CTTCATATAA GTGGAATCAT ATAGTATTTG TCCTTTTCTG TCTGGCTTAT 000240
000241 TTCACATATA ATGTCTTCCA GGTTCATCAT ATTGTAGCAC ATGTCAGAAT TTCATTCCTT TTTAAGGCTG AATAATATTC 000320
000321 CATTATGTGT ATACCACATT TTGTTTATCC ATTCATCCAT CAATAGACAT TTGGGTATTT CCAGGACAAT ATATTCTTAA 000400
000401 TTTAATCCCA CATTTTAAGA CTTACAGGTA ATTTAAATTC AATTCAACTT ACTGAGTATT TACTAAGGGT AACTCACTAT 000480
000481 GGGAAGTACT GTGGGAAATA CAAGGGTAAA TAAGACATGG TGCCTGCTCT CAAGGAAATT ATGATAGACT GGGAAAAGGG 000560
000561 AAGAGAAAGA AGTAGAAGTA ACCAGCATTT GCTAATCGCT TGCCATGTGC CAGGTGCTTT ACCCAATCGC TGCATGTATA 000640
000641 GCTCCCAATG ACTCTGTAAG TTAGATATTG TAATATCTAC TTTATATAGG AAGAAGAATG AAGGCACTGA GACTTTAAGT 000720
000721 AACCACCTCC AAAGCTGGGA TTTAAACTCG TATCTTGGAT TCAGAGGCCT GTGTTCATTC CACTACACAT GCTGTTCCCT 000800
000801 ATGATTCAAG GCAGAATGTG ATAAATCCTT GGGGAGAAGC TACAGCAAGG TAGAAGAGGA AGAGAAGAGA TTGCTCCTTG 000880
000881 CCTGAGGGTA AAGGTACATG ACAAAGGTAG GTCTTAGAGG TCAGGAAGGC TTACGTTTGA CAGAGATGGA GGGTGGAAAA 000960
000961 AATTGCACAA GCAGAGCAAA ACGATGGCAA TAATGCATCA CAAGGATGGA GGGGGTGAGA ATAGCTTAAG AAGGTCACTG 001040
001041 GTAATAGCAG TTGAGGCTTA ATTAGTCAGA ATGGAAAAGA GGATATGGAC ATGAGAGATA TCTTAGAGGT GAGAATGACA 001120
001121 GAACTCGGCA ATCACCGCAT TTCATAATGC ATCAAGTAGG CTGACCATAT ACTTTGCTGC TCAGGCAAGG ATTTATTTAA 001200
001201 GAGCGAGAAG CACCTTGCCC ACGGATTTCC CCTGTATCAC ATGAAGGAAG GCATCATTGA CTTTTTTTTT AACTGTTGCT 001280
001281 GCTTTAAAGT CTGTTTTGCC TGTAAGAACA GCTACTCCTG CTCTCTTTTG GTTTCTATTT GTGTGGAACA TCTTTTTCCA 001360
001361 CCCCTTTACC TTGAATTTAC ACGAATCCTT TTGTGTTAGG TGAGTCTCTT GAAGATAGCA AATATTTGGT TGGTGGTTCT 001440
001441 TTATTCATTC TGCCATTCTG TATCTTTTAA GTAGAGCATT TAGGCCATTT ACATTCAATG TTAATATTGA GATGTGAGGT 001520
001521 ACTGTTCTAT TCATCGTATC AGTTGTTACC TAGATACTGT TTTTTTCATT GTGCTATTGT TTTACAGGCC CTGTAAGACT 001600
001601 CACGCTTTAA GGAGGTTCAA CCCTGGCCTA CAGAATTGGG ATAGTTTCTA AAAGGTAAAA ACTTTTGGTT AGCAGGATGT 001680
001681 TGTCATAGGT GAATTATATT CATCACATCA TTGATCTAAG TTTATCTAAA TCTTAGATAC CACTACAAAC CTAATGAAAT 001760
001761 GGCTAACATT CAAGGAAACA ACTGACAAGA CTAAGTTTTG GCAGATGCAG AGCAACTGGA ACTCTCACAC ACAGGGAATG 001840
001841 CAAAATGGTA CAAGCACTTT GGAAAATAGT TTGCCAATTT ATTAAAAGCT AAACATGTAG TAGCAAACCA GTGCAAGCAA 001920
001921 ACTCCCAAAG TGTTGAAACA GAGAGCTCAA CTTTGGGCAC ATTTGTATGC CAGAGCACCA GTTTCTAATC CAGAATACAG 002000
002001 CCAAAGAAAT GGAAAACCTG TGTGATACGG GCTTTGATAG GAATGTAGTA ACAACAGCCT TCTCTTCAAA ATCATAGGAC 002080
002081 ATAGAAACCG AAACAGAATT GTTTCTGAAT AACTGAGGCA TAGAGAAACA GCTGCTGATA TAATCGAAGT TGCCTCTTTT 002160
002161 TGAAGTGGCA TCAACATCTG CTCTTTTTAG AATTCTGCAC GGATTTATTT TAAAGTTATC ATTCGGTAGC AGCTACAATT 002240
002241 CAATCCTTGC CTTATATCAT TCTTGCTTCA TGATGTTATC TCGTCCAGCT TGAAAACCAT TCTGACATAT AGCTGGATGC 002320
002321 ACCCTTGCTG GCAGTACTGA AGCACTGAAG ATAGGCTCTT GGAGAAGACG GGAAAGTTCA TATCTTTGTA TTGACCACAG 002400
002401 TACAGGCCCA TAGCAGAGAT ATTCTTCAGG AGCAGAAGGT TGGCTGGTTC AGAAGCAATG TTTCCTCCAG CAAATCCCAC 002480
002481 CACCACAATC CTGCCCTCCC ATGCCAGGCT GCAACATACA TTCACACCCA TTAGGAAGGC TAGTCTCGTA AAATAACAAG 002560
002561 TGACAAATGG CGAGGATGTG AAGAAGTTTA AGCACCTGTG CACTGTTGGT GGGATTATAA AACAGTGCAA CTACTATAGA 002640
002641 AAACAGTATG AAGGTTCCTC AAAAAATGAA AAATAGGTTC AGCAATTCCA CTTCTGATAT ATATATATAT ATACACATAT 002720
002721 ATATATATAT ATACCATAAG CAAAGTATTA GGGAACCAAA GGAACTAGAC AATTTTATAA GGGGGCCCAC TTAAAATCCA 002800
002801 GGCTGTTGAG CCAGGTGCAG TGGCTTAAAC CTATAATCCA AGCACCTTTG GAGGCCAAGG CAAGAGGATC ATGTGAGCCC 002880
002881 AGGTAAGAAG AAATACACTT TAATGAGGGA AGGACCATTT GCTTTATACA AAGACTTACT TTAGGATTCC TTTAACACAT 002960
002961 TGCCTCTTTA GAGAATTTTA AATAAACTAC AAAAATGCAT AAGTATTCTG TAGCCCAGTA TGAAAATTCC CCTACGGTAC 003040
003041 CATTGCTAAG CAATGAGTTA CAGAAACAAC TTTTGCAAAC ATCTTTGATA TAAAATATGT GTATATTTGT TTGGCTTTTG 003120
003121 CTTTTTGCTT TTCTTCTTTA GAAGGGAAAT GAGAAGCTAT TGCAAAAACA CAATTATCCA GAAGGCAAGA AGGAAGGCAA 003200
003201 GAGATGGGCG AGTTTTACCA GCTGTCTATC CTGGCTTTCC ACTTGGACTA CACGCTCCTT CCTTTGCTTC TCCTCTAAGC 003280
003281 ACAGCACCAG GCACAGTGCA GAGATGAACA AACATATAGA CTGCCTGCCA CTCAGCTCAG GGGCTAGAGA ACCAACTGGA 003360
003361 CCCCTTTTGT GGGTAGGCTC TGCATCCTTC AGGCTGCCCT GACTGTAGTT CACGCTGGAC TGCGCACCCC TCTGCATCGC 003440
003441 CAGCTTGCAC TTCTCGTCAC TTCCAGCAGC AGCTATATTA CCCCAGGCTG GGTACGGGCC CAATGCTCAA GAGCAAAAAT 003520
003521 CGCAGTGCCA TAAGTTATAG GGAGGACAGC AGCTTCTTAT AGGGAGACCT TTTCTGGAAT CTGCCACAGG TCCTAAAAAA 003600
003601 GAGATAACAG TGACTTACAG ATTGAGTGTA TGTACCTAAG TCGTAAAGGC TGCTCAGTAA ATATTAGGAT TCAGGTGTGA 003680
003681 AGGGAAGATG GGGCCTTTCC TGATATTGAT CACGGCAGAT CAAAATATCA CCAAAGTTAA CTCCACAGAA ATGGACATCA 003760
003761 ACTCTGACCT
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Predicted Small Protein

Name NONHSAT007801_smProtein_983:1060
Length 26
Molecular weight 2692.0822
Aromaticity 0.0
Instability index 101.968
Isoelectric point 6.69989013672
Runs 6
Runs residual 0.0316981132075
Runs probability 0.0421598068658
Amino acid sequence MAIMHHKDGGGENSLRRSLVIAVEA
Secondary structure LEEEEELLLLLLHHHHHHHHEEEEL
PRMN -
PiMo -