NONHSAT007461
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT007461 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1566 nt |
Genomic location |
chr1-:169411876..169429690 |
Exon number |
6 |
Exons |
169411876..169412646,169420371..169420549,169421796..169421987,169423738..169423818,169429035..169429102,169429491..169429690 |
Genome context |
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Sequence |
000001 GCGGCTCACT CCCCTCGGAT GGCCTTTCCA CCCGAGTTTT TCCCGGGAAG AGGCTCTCAA GACTAGCCAG TGCAGGAGGA 000080
000081 GGAGTCGAAC TCTGGATAGC CTGTTTATAA AGCCCTAACT GTGCCGATGT TGACCGTTTT CTGAAACTCC TCCTCCAAAA 000160 000161 CCCACGCCAA ACCACAAGAT GAAGGAAATT CACACATCAG GATGCCAAAA ACCATGGAAG ACTTCTGATG TTCTGGGAGG 000240 000241 GTTGACAAAG ATGGACCTTA AATTCTAGAA TTTAGGCATT CATGGTTGAG ATCCTGAAGA AAACATTTTC TGCTGAGCAG 000320 000321 AAGCAATTTA ATAATTGCCT CCCTTCATTT CAGAATCCAG AAGTGTCTGC AGCCAACCAA AGAGGGAATG TTTGATGGAC 000400 000401 AGAAGTTGGA ATGGAAGGAG AAAATGGCTT ATTTTAGTTA AAATGTTTTA CTTTTGGAAA TTTTTTTAAA AAACTTATTT 000480 000481 TCACATATCA CATAAATACA TTGTTAGGAC CCCTCCCAGG GCCATAGAAG TGGCCTGCAC AGACATCTGG TTTTAAAGTG 000560 000561 GCAGTACAGA AGCAAGCTGG TTTCACTGTC CCCACAGAAA ACCAAAAATA TACAGAGCTG TGATTTTCCC CAGCAACAGT 000640 000641 CCAGAACTCA TATATGAGGA TGAGACAGAT CCTAGGGCCA TAAAGAAAAA AAACTTCTTT GGAAAAAAAC TCCAAGCAGA 000720 000721 TGTTAAGGTC GATCACAAGA CTTCTAATCA CATACTGAGA AAACAAAAGC ATCACTGCAG GAAATCCCTT TAAACTTTTG 000800 000801 CCTTATGGCA AATGGACATA TGCTCAAAGG TGCTGAACAC ATGAAATAAG GCTGTAAAAA TCTACTAAAC AAATGAAAAT 000880 000881 AATTACATTG CAAATGCTTT TTTCCTTAGA GCACTTGTTT TAAGAAATGT ATTTCTGGAA TACAAGCTAG AAGTGGTTTT 000960 000961 GTCCTGCTGC TGAGGGTTAA AGGCAAACTT AAGGTCTCCA GCCTTTGGTG TGACACATGA GAGCGAATAA CAAAAAGAAG 001040 001041 GTCTTGAGTT TTTTGATAGT TAGGCATATT TTCATTATAA TGGTATCCAG ATATGTGATA TATCTGATAT ATAATACACA 001120 001121 TATAGACACA TATATGTCTC TCTATATATT TGTATATAGG TAGATTTTAT TATATGTGAA ATCTGCATAT AACTATAATG 001200 001201 AAAGTCTCAA CTGTTACCTC AATAACCTTT AACCTGACTA CAATATTTAA AAGTTCAATC TCACTACCAG AACACACCCT 001280 001281 GACACTTCTG ATTCTATTTT GCTTTATGTT TTGCATATTG TTTGTCAACT TCTATCATAT GACTTAGTAT GTTTATTATT 001360 001361 TATTGTCCTC TCTCTCCATT GAAGAGAATT TTTGATTCCT TAAAGAAAAT ATTTCTCACA TGATCAGTTT TTTAATTTAC 001440 001441 AAAATATCTC AATGTCAATG TACCCATTTC AAATATATGT GTGTTAAACA TTAAAAAAAA AAAAAAAAAA AAAAAAAAAA 001520 001521 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT007461_smProtein_1016:1162 |
Length | 49 |
Molecular weight | 5961.1612 |
Aromaticity | 0.1875 |
Instability index | 42.69375 |
Isoelectric point | 10.0877075195 |
Runs | 8 |
Runs residual | 0.00109649122807 |
Runs probability | 0.0578630100689 |
Amino acid sequence | MRANNKKKVLSFLIVRHIFIIMVSRYVIYLIYNTHIDTYMSLYIFVYR |
Secondary structure | LLLLLLHHHHHHHHHHHHEEEEHHHHHHHHHHHHLHHHHHEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTToooooooooo |