NONHSAT007345
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT007345 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3197 nt |
Genomic location |
chr1+:165880633..166059452 |
Exon number |
2 |
Exons |
165880633..165880700,166056324..166059452 |
Genome context |
|
Sequence |
000001 ATTCCAGGTC AGCTTGGCTG TGGTCTTAGA GGCAGGGAGT GCCTACCCAG TCCTGCCTCA GGAGCAGGAT GGAGTTTCAC 000080
000081 TCTTTCACCC AGGCTGGAGT GCAATGGCAC GATCTCGGCT CACTGCAGCC TCTGCCTTCC AGTTTCAAGC GATTCTCCTG 000160 000161 CCTCAGCCTC CCAAGTAGCT GGGATTACAG GCGCCCGCCA CCATGCCGGC TAATTTTTGT ATTTTTGATA GAGACGGGGT 000240 000241 TTCACCATGT TGTCCAGGCT GGTCTTGAAC TCCTGACCTT GTGATCCACC TGCCTCAGCT CCCCAAAATG CTAGGATTAC 000320 000321 AAGCAAGAGC CACCGTGCCC AGCCCACCAT CTCCATTTTG CAAAGGAGGA AACTGAGACA CAGTGACACC AAGGATGACA 000400 000401 ACTGGAGTAA ACCATGGAGG CAGGATTCTC ACCCTAACAG ATACCTCAAC AGGCCAAATT TAAGTACTTG TGGAAGGAAA 000480 000481 ACTACCATGT CTTGAGCACC TAGCGTACTT CAGGCACCAT GTTAGGTACT TTGTATGGGT TAACTAATTT GGTCATCGTA 000560 000561 AGTCCTTGTG AAGGGGGCAC TGTAAGTCCT GTGTTACAAA TGCAACAACT TAGATGGAGA GAAGTTAAGT AATGTGTCTC 000640 000641 TCTTTGCCCA GCTTGTAAGT GGCAGAGCTG GGACTTAAAC CCAGAGGAGA CATACACATG ACTGTGTTGT GTTGTCAATT 000720 000721 TTTAGAAGTT ACATTACTTA ATTGATTGGT TAATTCTTTT AACGTGTGAT GTTTGAAATG TGTAGGCATC TAAGACAGTA 000800 000801 TGTGGGCAGG GGGTGGGCAG GGAGACACAC AAAGATGACT CTGACCTGGC TACTAGCAGG CATAAGCCGT AAGTAAATGA 000880 000881 CTACAGTGCA AGGAGGAATG GGAGGAGTGC CGCTCAGGCT GGAGAGCATT CTGGGGTGCT GGGGATGGCA GAGGGTACTT 000960 000961 GTGTCTGCTG CTTTTACCTT CTGCACCCTG GGGAGGGTGG TTCAGAAGTC AGCCTGCCCC AACGCAAAGC CCAGGCTGCA 001040 001041 GATGCTTTGA CCCAATTCTG CTCAAGCTGT TGGTCATCTC CTTCCAACAC TCAAGAGACT GGCTTTTGTC CCTGGATGGA 001120 001121 TCATCTCTGC TCTGATGATT CTGGCATCCA TGTGAGAACC AGCAGGGGAA CAGCTATGCA ACAGAGGCCT CTGGAACCTC 001200 001201 ACGCTCTTTA GATGTTAAAT TGAAATCAGG TGCTTTATGA CTCGTCTGTA TTCAGGAGCC CATCAACGCT GCATGGGAAC 001280 001281 TGCTGTGGAT TCAAAAGGAA CACCAGTGTC ATCCCTGCAT GGCCCTTTAC TCCACTGTGC TCCATGTTCT CCTCACTCCC 001360 001361 TCCCAAGGGA GTTTTCTCCC ATCTGCAGAC CCTGCTGGGT GGGGCAGAAA GAGCACTGGG TTTGGACTCA GAAGATCCAG 001440 001441 GCCCACTATC TGGTCTGTCA CTCAGCAGCA TGACTGTCAC GAAGGCTCTC CTAGGCCTCA GTCTTCTGAG CAGTAAAATG 001520 001521 GGATAATAAT GCCTTCTTGC AGAGCTGCCA TGTGGGTTAC ATGAGAAGTA TGTGGAACGG TAGGTGTCAC ACTTACTGCA 001600 001601 ATTTCCAGGC CTCACGGACT GGCATACAGC TATGGCCAAG TCATTCCCAC CCTTCAATCC TCTGTGAAGG GCTTCCTGAC 001680 001681 TGTTCCAGCC TGCCTGACTT CTGGAGGGAT GTAGGACTGA CCCGAAGTAT TTGGCCAACC ACGGGGAGGG GCAGAGGGGG 001760 001761 CAGACACTGG GTGAATCTGG GCTTTGGGCT GTGTGGGGCT AGTGGGCTCC TCCAGTGTAC AATTCTTGAG AGGCTTCCCA 001840 001841 GTACTGGTAG AATACCACCC AAACCTCTAA TGTGCTCCAC ACAGTCCTGC ATCCTCTGGC CTCTGACTCC CCAGCTTCAT 001920 001921 CTCACACCAC ACTCCCCCAT GCTCTCAGTG TTCCACTGCA AACAGCTTTC CACCCCCAAT AGCTTTCCTT ATGGTCCTCC 002000 002001 AACATGCCAG GCTCTTCCCT GCCTCAGAGC CTCGGCAGAC ACTGTCTGGA AGGTACTTTT TCCCACTGCT CCCTTGGGCA 002080 002081 ACTGAGTAAT CCTTAGGTCT AAACCCAAGT GTCACTTCCT CTGGGATACC TCCCCTGATC CATGCACCAC CTCCTCCCAC 002160 002161 GCTGAACGAA ACTAGGTCTC TGCTATAGAA CTGCATCTTC TCCTGATTCA TAGAACTTAT CACCATTTGT AATTATATAC 002240 002241 ATGTGAACCT ATTTATGATT TAATGTGTCT CTCTTCGTGT GGATTGGAAC ACCTTAACTG ATCACTGCTA CTGACGAGGA 002320 002321 TTCACCACAG CCTCGGATAT AGTGGTATTC CATCAGCGTG TATGAAGAGT GAATGTCTAC ATGAAACAGG TAGCGACAAG 002400 002401 GGGCAAGAGG ATGGAGGAGA GTGGGAAGGG AGTGGTGGCA GTGATGTGCC TGAGAGGTAC CACGGTGGGC AGCAGGGAAA 002480 002481 AAGCAGAGGG CTCTAGGAAG TGAAAGAATG GGTCAGGAGG AAGACCTGAG AGTGGGCTGT TTGCATTTAA GATTTCAGAG 002560 002561 GGGCAGCCAT GAAGCATGGC CTGTTTTGAG GCTCCTAGGA AGGGGAAGAT GCAGCCTTGT GATGGAGTTT TGTACAGTTA 002640 002641 GGGCATCCAG AGTGCCCTGG GACTGGGAAC TGGCAAGGAA ATAAGAGAGA GCTCTGGAAT GGGGGGTGAG GGGGAGGGTA 002720 002721 CCGATGGTGC CTATGTCCCT GTGTTATGGG GTGGCCCTGC ACTCCAGATG TCACCAGTAT CCCTTGGACT CAGTAGGAGG 002800 002801 GAGCTCTCTC CAGGGAAAAG GGAACTCTGT TAACATAACC GCGGTGGGGG TTAAAGAGCA GCTTTCCCTC AGTGGTACAG 002880 002881 AGCCCTGTGG CTGGCAGCGC TGCACAGGCT CCTCGAGACT CAGCTCCCAC TGTCCCTGAG CCACACTGGG GCTCTTCGCC 002960 002961 CTCCTGGCAG CAATTATAAA GTTGAACAGC AGAGGCAGGG GAGGATCGAA AGCCAAACAG GAAGCCAATA ATTGCCTCTT 003040 003041 GCAGAAATAG CTCTTTCAAA ATAAAAGTGA GGTCCTGAGG TTCCTACCCA GGTCAGTTAT ACAATGCTGC TCCTGTCCTC 003120 003121 CCAGAGCCCT GTAATCTTCT TCCCAGTGTC TACTTTCTGG CCCTGAACTC CAGTACAGGT CAAAAGATGT CCATGTG |
Predicted Small Protein
Name | NONHSAT007345_smProtein_944:1210 |
Length | 89 |
Molecular weight | 9560.6335 |
Aromaticity | 0.0681818181818 |
Instability index | 47.7807954545 |
Isoelectric point | 5.34429931641 |
Runs | 11 |
Runs residual | 0.00636363636364 |
Runs probability | 0.0435917200624 |
Amino acid sequence | MAEGTCVCCFYLLHPGEGGSEVSLPQRKAQAADALTQFCSSCWSSPSNTQETGFCPWMDH LCSDDSGIHVRTSRGTAMQQRPLEPHAL |
Secondary structure | LLLLEEEEEEEEEELLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL EELLLLLEEEEELLLLEEEELLLLLLLL |
PRMN | - |
PiMo | - |