NONHSAT007345

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT007345

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

3197 nt

Genomic location

chr1+:165880633..166059452

Exon number

2

Exons

165880633..165880700,166056324..166059452

Genome context

Sequence
000001 ATTCCAGGTC AGCTTGGCTG TGGTCTTAGA GGCAGGGAGT GCCTACCCAG TCCTGCCTCA GGAGCAGGAT GGAGTTTCAC 000080
000081 TCTTTCACCC AGGCTGGAGT GCAATGGCAC GATCTCGGCT CACTGCAGCC TCTGCCTTCC AGTTTCAAGC GATTCTCCTG 000160
000161 CCTCAGCCTC CCAAGTAGCT GGGATTACAG GCGCCCGCCA CCATGCCGGC TAATTTTTGT ATTTTTGATA GAGACGGGGT 000240
000241 TTCACCATGT TGTCCAGGCT GGTCTTGAAC TCCTGACCTT GTGATCCACC TGCCTCAGCT CCCCAAAATG CTAGGATTAC 000320
000321 AAGCAAGAGC CACCGTGCCC AGCCCACCAT CTCCATTTTG CAAAGGAGGA AACTGAGACA CAGTGACACC AAGGATGACA 000400
000401 ACTGGAGTAA ACCATGGAGG CAGGATTCTC ACCCTAACAG ATACCTCAAC AGGCCAAATT TAAGTACTTG TGGAAGGAAA 000480
000481 ACTACCATGT CTTGAGCACC TAGCGTACTT CAGGCACCAT GTTAGGTACT TTGTATGGGT TAACTAATTT GGTCATCGTA 000560
000561 AGTCCTTGTG AAGGGGGCAC TGTAAGTCCT GTGTTACAAA TGCAACAACT TAGATGGAGA GAAGTTAAGT AATGTGTCTC 000640
000641 TCTTTGCCCA GCTTGTAAGT GGCAGAGCTG GGACTTAAAC CCAGAGGAGA CATACACATG ACTGTGTTGT GTTGTCAATT 000720
000721 TTTAGAAGTT ACATTACTTA ATTGATTGGT TAATTCTTTT AACGTGTGAT GTTTGAAATG TGTAGGCATC TAAGACAGTA 000800
000801 TGTGGGCAGG GGGTGGGCAG GGAGACACAC AAAGATGACT CTGACCTGGC TACTAGCAGG CATAAGCCGT AAGTAAATGA 000880
000881 CTACAGTGCA AGGAGGAATG GGAGGAGTGC CGCTCAGGCT GGAGAGCATT CTGGGGTGCT GGGGATGGCA GAGGGTACTT 000960
000961 GTGTCTGCTG CTTTTACCTT CTGCACCCTG GGGAGGGTGG TTCAGAAGTC AGCCTGCCCC AACGCAAAGC CCAGGCTGCA 001040
001041 GATGCTTTGA CCCAATTCTG CTCAAGCTGT TGGTCATCTC CTTCCAACAC TCAAGAGACT GGCTTTTGTC CCTGGATGGA 001120
001121 TCATCTCTGC TCTGATGATT CTGGCATCCA TGTGAGAACC AGCAGGGGAA CAGCTATGCA ACAGAGGCCT CTGGAACCTC 001200
001201 ACGCTCTTTA GATGTTAAAT TGAAATCAGG TGCTTTATGA CTCGTCTGTA TTCAGGAGCC CATCAACGCT GCATGGGAAC 001280
001281 TGCTGTGGAT TCAAAAGGAA CACCAGTGTC ATCCCTGCAT GGCCCTTTAC TCCACTGTGC TCCATGTTCT CCTCACTCCC 001360
001361 TCCCAAGGGA GTTTTCTCCC ATCTGCAGAC CCTGCTGGGT GGGGCAGAAA GAGCACTGGG TTTGGACTCA GAAGATCCAG 001440
001441 GCCCACTATC TGGTCTGTCA CTCAGCAGCA TGACTGTCAC GAAGGCTCTC CTAGGCCTCA GTCTTCTGAG CAGTAAAATG 001520
001521 GGATAATAAT GCCTTCTTGC AGAGCTGCCA TGTGGGTTAC ATGAGAAGTA TGTGGAACGG TAGGTGTCAC ACTTACTGCA 001600
001601 ATTTCCAGGC CTCACGGACT GGCATACAGC TATGGCCAAG TCATTCCCAC CCTTCAATCC TCTGTGAAGG GCTTCCTGAC 001680
001681 TGTTCCAGCC TGCCTGACTT CTGGAGGGAT GTAGGACTGA CCCGAAGTAT TTGGCCAACC ACGGGGAGGG GCAGAGGGGG 001760
001761 CAGACACTGG GTGAATCTGG GCTTTGGGCT GTGTGGGGCT AGTGGGCTCC TCCAGTGTAC AATTCTTGAG AGGCTTCCCA 001840
001841 GTACTGGTAG AATACCACCC AAACCTCTAA TGTGCTCCAC ACAGTCCTGC ATCCTCTGGC CTCTGACTCC CCAGCTTCAT 001920
001921 CTCACACCAC ACTCCCCCAT GCTCTCAGTG TTCCACTGCA AACAGCTTTC CACCCCCAAT AGCTTTCCTT ATGGTCCTCC 002000
002001 AACATGCCAG GCTCTTCCCT GCCTCAGAGC CTCGGCAGAC ACTGTCTGGA AGGTACTTTT TCCCACTGCT CCCTTGGGCA 002080
002081 ACTGAGTAAT CCTTAGGTCT AAACCCAAGT GTCACTTCCT CTGGGATACC TCCCCTGATC CATGCACCAC CTCCTCCCAC 002160
002161 GCTGAACGAA ACTAGGTCTC TGCTATAGAA CTGCATCTTC TCCTGATTCA TAGAACTTAT CACCATTTGT AATTATATAC 002240
002241 ATGTGAACCT ATTTATGATT TAATGTGTCT CTCTTCGTGT GGATTGGAAC ACCTTAACTG ATCACTGCTA CTGACGAGGA 002320
002321 TTCACCACAG CCTCGGATAT AGTGGTATTC CATCAGCGTG TATGAAGAGT GAATGTCTAC ATGAAACAGG TAGCGACAAG 002400
002401 GGGCAAGAGG ATGGAGGAGA GTGGGAAGGG AGTGGTGGCA GTGATGTGCC TGAGAGGTAC CACGGTGGGC AGCAGGGAAA 002480
002481 AAGCAGAGGG CTCTAGGAAG TGAAAGAATG GGTCAGGAGG AAGACCTGAG AGTGGGCTGT TTGCATTTAA GATTTCAGAG 002560
002561 GGGCAGCCAT GAAGCATGGC CTGTTTTGAG GCTCCTAGGA AGGGGAAGAT GCAGCCTTGT GATGGAGTTT TGTACAGTTA 002640
002641 GGGCATCCAG AGTGCCCTGG GACTGGGAAC TGGCAAGGAA ATAAGAGAGA GCTCTGGAAT GGGGGGTGAG GGGGAGGGTA 002720
002721 CCGATGGTGC CTATGTCCCT GTGTTATGGG GTGGCCCTGC ACTCCAGATG TCACCAGTAT CCCTTGGACT CAGTAGGAGG 002800
002801 GAGCTCTCTC CAGGGAAAAG GGAACTCTGT TAACATAACC GCGGTGGGGG TTAAAGAGCA GCTTTCCCTC AGTGGTACAG 002880
002881 AGCCCTGTGG CTGGCAGCGC TGCACAGGCT CCTCGAGACT CAGCTCCCAC TGTCCCTGAG CCACACTGGG GCTCTTCGCC 002960
002961 CTCCTGGCAG CAATTATAAA GTTGAACAGC AGAGGCAGGG GAGGATCGAA AGCCAAACAG GAAGCCAATA ATTGCCTCTT 003040
003041 GCAGAAATAG CTCTTTCAAA ATAAAAGTGA GGTCCTGAGG TTCCTACCCA GGTCAGTTAT ACAATGCTGC TCCTGTCCTC 003120
003121 CCAGAGCCCT GTAATCTTCT TCCCAGTGTC TACTTTCTGG CCCTGAACTC CAGTACAGGT CAAAAGATGT CCATGTG
[back to top]

Predicted Small Protein

Name NONHSAT007345_smProtein_944:1210
Length 89
Molecular weight 9560.6335
Aromaticity 0.0681818181818
Instability index 47.7807954545
Isoelectric point 5.34429931641
Runs 11
Runs residual 0.00636363636364
Runs probability 0.0435917200624
Amino acid sequence MAEGTCVCCFYLLHPGEGGSEVSLPQRKAQAADALTQFCSSCWSSPSNTQETGFCPWMDH
LCSDDSGIHVRTSRGTAMQQRPLEPHAL
Secondary structure LLLLEEEEEEEEEELLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL
EELLLLLEEEEELLLLEEEELLLLLLLL
PRMN -
PiMo -