NONHSAT006584
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT006584 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4041 nt |
Genomic location |
chr1-:154128835..154155623 |
Exon number |
5 |
Exons |
154128835..154130197,154142876..154142945,154143125..154145454,154145560..154145677,154155464..154155623 |
Genome context |
|
Sequence |
000001 GAGCGCGAGC AGTAGCTGGG TGGGCACCAT GGCTGGGATC ACCACCATCG AGGCGGTGAA GCGCAAGATC CAGGTTCTGC 000080
000081 AGCAGCAGGC AGATGATGCA GAGGAGCGAG CTGAGCGCCT CCAGCGAGAA GTTGAGGGAG AAAGGCGGGC CCGGGAACAG 000160 000161 AGGTATGAAG GTTATTGAAA ACCGGGCCTT AAAAGATGAA GAAAAGATGG AACTCCAGGA AATCCAACTC AAAGAAGCTA 000240 000241 AGCACATTGC AGAAGAGGCA GATAGGAAGT ATGAAGAGGT GGCTCGTAAG TTGGTGATCA TTGAAGGAGA CTTGGAACGC 000320 000321 ACAGAGGAAC GAGCTGAGCT GGCAGAGTCG TGAGTATCTA GCTCCCCAAA TCTTGTCATT ACCAATTTAT CCCTTCCCCT 000400 000401 TTGGCTTGGG CACTAATATG AATAAATTAG CATTCCTTCA ACCTTGTTAA ACAGGGCCTA GGGAATGGGA GTCATCTATA 000480 000481 GTGCTTTTTT AGGCCCAAGA ATGGTTTTAG GCTTCCTTAT TCTCCTGACT AGTGACAAGT GACAAAAGAG GCTTTCTTAT 000560 000561 TTTTTGTTGG TAGGGTTTAC AAATTGAGAG CAAATAAGGA CTAATACATG GTGAACAGTT AATTGGAAGA TCCTACTGGG 000640 000641 TCCTTCCACC TGGGGTGGAA GACATCAAAG TGGCTATCCT GATTTAAGAT CTAGTGTCTG gctgggtgtg gtggctcaaa 000720 000721 cctgtagtcc cagctactta gtatgccaag gcaggaaggt tgcttgaacc caggagttgg aggccagcct gggcgtcata 000800 000801 gggagaccct gtccctaaaa caaataaaTT TAAAAAAAAA ATCTGGTGTC TGTTTTGGCC ACTTTGCCAA TCTGCTAGGG 000880 000881 AACCTTAGGG CAAGGGTAGA TATTAACTGC TCTCCCGTCG GTACCTTCTG GGCCTTGATT AACAAAGTCA GTGCTGAATG 000960 000961 CATATGTATT TGTGCTTCCC TCTTACATTC CCGTCTGCCA GACATAACAT ATCATGACCA TGGTGGTGTT CTCTTCCCAT 001040 001041 TTTTTGAATT TTTTTTTTTC GTTTTGCTGC TTGTTTTCTT GCTGTGTTCC TTTTTGACCT TTCTCCCTCC CCACAACCTG 001120 001121 GCTTGTGCCA TCCCCGTGAC TATCACTAAC AGCCGTTGCC GAGAGATGGA TGAGCAGATT AGACTGATGG ACCAGAACCT 001200 001201 GAAGTGTCTG AGTGCTGCTG AAGAAAAGGT ACTAACCATT AAGCCCACAG CAAGGTTATA TATGTGGTGT Ggttttgttt 001280 001281 tgttttgttt ttgttttgCA GCTGCCTCCC CTCCACTTGA TTTTGTTGAG TGCTGTCTCA TCTCTTCATG GAATGCTCCA 001360 001361 TTCTTTTCCA CTTACTTGGC ATCTTTCATC TCTTCTTTCC TAGTTGCTTC ACTGCCTCTC CACAGGGTCT CCTTCCTTTG 001440 001441 GGTGATTTGG GGGACTGTTT GGGTTGGGCA TTTGTTCCCA CCTCCACCCC AGGTAGCAGT TATGACTTGT TCCTGGTAGT 001520 001521 GGATTTCTCT CAAGTGCTTT ATTAGTATTC AAACATTTTT GAGCCCAGGA AGGTCTAGCT CCTGACACGT TCTATGGTAG 001600 001601 AGGGAGGAGG GTTGATGCTT GCTCAGGTTA CTTGGGAACA TCTCTTCCCC AGTATGCCTT CCAACTCTCT CTACATATAG 001680 001681 GTTCAATTCA CGTCTATGTG TCTCTCTCCC TTTTTTTATT CTCTTCCTTT TCCCTTTTCC TCTCCTGTGG TATTTAAAAT 001760 001761 ATTCACAGTA AGTGTTCTGA GCTGGAGGAG GAGCTGAAGA ATGTCACCAA CAACCTCAAG TCTCTTGAGG CTCAGGCGGA 001840 001841 GAAGGTAGGG GCTGGTTTGT GAAAGTGACA GGCTTTGGGG CCTGGGCCCA GCCCTGCCCT TGATGAAAGA CTGGAGACAC 001920 001921 GCATTCCATA TATAATCCAG TGAGGCGTGT CCTCTTCCTA CCTCCTTACC ATGTATTCAG GTTCTGGGTT TAATGCTATT 002000 002001 TTCTGTGCAC TTTGATTGCT TTAATTAAAA TAACTTCTTG GTCTCAGGTT ACTGGAGTCA TGTGCTCCTT AGGCTGATAC 002080 002081 TGCTGTGCTG AAAAGCAATA ATCAAGGGCC CTAACAGGCT TTCTAGCAGA CAGATGGGGG CAACAGACAG AATCAGCTCT 002160 002161 GAGACCTAAT GAGCAATCAA GACAGATGAC TTCACTTTGC CATCATGTGG GTGTGTTTCA GTCATGTGAC CTTGGGGTGC 002240 002241 TACTACTCTT GCTCATCAAG CAGGGGAAAG GAAAAACACC TCCTTGGGTT GATCTGAATA ATATCAAAGC TTAGATCCAT 002320 002321 CTTAAAAAGT CATGGAGAAT TTTAACCTGA GGATCTCATG GCTCTAAAGA CATAGATTTC TGAATTTCAA GGACCTATTG 002400 002401 TCCAGAGCCA GGCCTTGCTC TTACTCTTGG ACCATTCAGC ACATTTAGTG CAAGAGGATA TTCAATGTAA GTTAAATGTA 002480 002481 GGGAGGGGGG TATTGCCTGT GTGACTAATT TCTACTCTGA AATTTTTAAT CTACTTATCT TACAGTACTC TCAAAAAGAA 002560 002561 GATAAATATG AGGAAGAAAT CAAGATTCTT ACTGATAAAC TCAAGGAGGC AGAGACCCGT GCTGAGTTTG CTGAGAGATC 002640 002641 GGTAGCCAAG CTGGAAAAGA CAATTGATGA CCTGGAAGAT AAACTGAAAT GCACCAAAGA GGAGCACCTC TGTACACAAA 002720 002721 GGATGCTGGA CCAGACCCTG CTTGACCTGA ATGAGATGTA GAACGCCCCA GTCCCACCCT GCTGCTGCTC CTCCCTCTGA 002800 002801 CCCAGACTCC GCCTGAGGCC AGCCTGCGGG AAGCTGACCT TTAACTGAGG GCTGATCTTT AACTGGAAGG CTGCTTTCTC 002880 002881 CTTTCACCAC CCCCTCCTTC CCTGTGTCTT TTTCGCCAAA CTGTCTCTGC CTCTTCCCGG AGAATCCAGC TGGGCTAGAG 002960 002961 GCTGAGCACC TTTGGAAACA ACATTTAAGG GAATGTGAGC ACAATGCATA ATGTCTTTAA AAAGCATGTT GTGATGTACA 003040 003041 CATTTTGTAA TTACCTTTTT TGTTGTTTTG TAGCAACCAT TTGTAAAACA TTCCAAATAA TTCCACAGTC CTGAAGCAGC 003120 003121 AATCGAATCC CTTTCTCACT TTTGGAAGGT GACTTTTCAC CTTAATGCAT ATTCCCCTCT CCATAGAGGA GAGGAAAAGG 003200 003201 TGTAGGCCTG CCTTACCGAG AGCCAAACAG AGCCCAGGGA GACTCCGCTG TGGGAAACCT CATTGTTCTG TACAAAGTAC 003280 003281 TAGCTAAACC AGAAAGGTGA TTCCAGGAGG AGTTAGCCAA ACAACAACAA AAACAAAAAA TGTGCTGTTC AAGTTTTCAG 003360 003361 CTTTAAGATA TCTTTGGATA ATGTTATTTC TATTTTTTAT TTTTTTCATT AGAAGTTACC AAATTAAGAT GGTAAGACCT 003440 003441 CTGAGACCAA AATTTTGTCC CATCTCTACC CCCTCACAAC TGCTTACAGA ATGGATCATG TCCCCCTTAT GTTGAGGTGA 003520 003521 CCACTTAATT GCTTTCCTGC CTCCTTGAAA GAAAGAAAGA AAGAAGACTG TGTTTTTGCC ACTGATTTAG CCATGTGAAA 003600 003601 CTCATCTCAT TACCCTTTTC TGGGTTTGAA GCTGCTGTCT CTAGAAGTGC CATCTCAATT GTGCTTTGTA TCAGTCAGTG 003680 003681 CTGGAGAAAT CTTGAATAGC TTATGTACAA AACtttttaa attttatatt attttGAAAC TTTGCTTTGG GTTTGTGGCA 003760 003761 CCCTGGCCAC CCCATCTGGC TGTGACAGCC TCTGCAGTCC GTGGGCTGGC AGTTTGTTGA TCTTTTAAGT TTCCTTCCCT 003840 003841 ACCCAGTCCC CATTTTCTGG TAAGGTTTCT AGGAGGTCTG TTAGGTGTAC ATCCTGCAGC TTATTGGCTT AAAATGTACT 003920 003921 CTCCTTTTAT GTGGTCTCTT TGGGGCCGAT TGGGAGAAAG AGAAATCAAT AGTGCAACTG TTTTGATACT GAATATTGAC 004000 004001 AAGTGTCTTT TTGAAATAAA GAACCAGTCC CTCCAACCCT C |
Predicted Small Protein
Name | NONHSAT006584_smProtein_92:352 |
Length | 87 |
Molecular weight | 9913.0962 |
Aromaticity | 0.0116279069767 |
Instability index | 60.5662790698 |
Isoelectric point | 5.05023193359 |
Runs | 10 |
Runs residual | 0.0233425893787 |
Runs probability | 0.0494612259318 |
Amino acid sequence | MMQRSELSASSEKLREKGGPGNRGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY EEVARKLVIIEGDLERTEERAELAES |
Secondary structure | LLLLLLLLLLHHHHHHLLLLLLLLLEEEELLLLLHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHEEEELLLHHHHHHHHHHLL |
PRMN | - |
PiMo | - |