NONHSAT006556
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT006556 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2530 nt |
Genomic location |
chr1-:153901977..153905741 |
Exon number |
3 |
Exons |
153901977..153902918,153903015..153903540,153904680..153905741 |
Genome context |
|
Sequence |
000001 CTGAGTCTTC GCCGTTCCTC AGAGCGCCTC AGTGACACCC CTGGATCCTT CCAGTCACCT TCCCTGGAAG TGAGGATAAC 000080
000081 CCCTCCCACA CAGATGTGCT TGAACACACA TAGCACACAC TCACCCTGTC CAAGGCAGGA GATGGGGAGG AGGTGGGAGG 000160 000161 GGCTGGGGAA GGGGCATGGG CTCCAGAGTG CTGGCGGCCA GACAGCACCT ACTTCCCGAC TCTCCCTGCC CACAGATTCT 000240 000241 GCTGTCCAGC TGCTCCCTGT GCCGTGCCTG TGATTCGCTG GTGTATGATG AGGAAATCAT GGCTGGCTGG GCACCTGATG 000320 000321 ACTCTAACCT CAACACAACC TGCCCCTTCT GCGCCTGCCC CTTTGTGCCC CTGCTCAGTG TCCAGACCCT TGATTCCCGG 000400 000401 CCCAGGTGCC CAAGGCAGGG CAAGTGCTGT GGGTGGGAAT AGGGAGGTGA AGGTCCAAAA GCTGACCCCT GCTGCTATCC 000480 000481 CCCTGCAGTG TCCCCAGCCC CAAATCTGCT GGTGCCAGTG GCAGCAAAGA TGCTCCTGTC CCTGGTGGTC CTGGCCCTGT 000560 000561 GCTCAGTGAC CGAAGGCTCT GCCTTGCTCT GGATGAGCCC CAGCTCTGCA ACGGGCACAT GGGGGTAAGG GCTGGGCCAA 000640 000641 AGGGGCATGA GGAACGGGAA TGTTGCCCTG TGTGGGGCCT GTGGGGTGCC AGGGAGAGAT GGGCACATCT CTTGCCCTTG 000720 000721 AGGGCAAGGG GCATCCCAAA AGCTGTTGGA TGTGGTGGCT CAGTGGGAGG CAAGGCTCTG GGGATGTACA TGCCCTCTAC 000800 000801 TGCCCTCCCC CTTTGTGCCT GATAGGGAGC CTCCCGGCGG GTTGAGAGTG GGGCATGGGC ATACCTGAGC CCCCTGGTGC 000880 000881 TGCGTAAGGA GCTGGAGTCG CTGGTAGAGA ACGAGGGCAG TGAGGTGCTG GCGTTGCCTG AACTGCCCTC TGCCCACCCC 000960 000961 ATCATCTTCT GGAACCTTTT GTGGTATTTC CAACGGCTAC GCCTGCCCAG TATTCTACCA GGCCTGGTGC TGGCCTCCTG 001040 001041 TGATGGGCCT TCGCACTCCC AGGCCCCATC TCCTTGGCTA ACCCCTGATC CAGCCTCTGT TCAGGTACGG CTGCTGTGGG 001120 001121 ATGTACTGAC CCCTGACCCC AATAGCTGCC CACCTCTCTA TGTGCTCTGG AGGGTCCACA GTGAGTCTGG TATTTGGCCT 001200 001201 GGGTGGGGAG GGTGGGTCCC ATACCCAGAG GGCTCAGTGA TTCTGGTGGC CTTCTTTCCT TTCATCCAGG CCAGATCCCC 001280 001281 CAGCGGGTGG TATGGCCAGG CCCTGTACCT GCATCCCTTA GTTTGGCACT GTTGGAGTCA GTGCTGCGCC ATGTTGGACT 001360 001361 CAATGAAGTG CACAAGGCTG TGGGGCTCCT GCTGGAAACT CTAGGGCCCC CACCCACTGG CCTGCACCTG CAGAGGTATG 001440 001441 GTGCTACCAT CTGGGTGATC CCTGGTCTGT CCGGGGCTCC ACACCCCTTT TCTCTCACTC ATACACTTCT GCCTCCACTA 001520 001521 AAGGGGAATC TACCGTGAGA TATTATTCCT GACAATGGCT GCTCTGGGCA AGGACCACGT GGACATAGTG GCCTTCGATA 001600 001601 AGAAGTACAA GTCTGCCTTT AACAAGCTGG CCAGCAGCAT GGGCAAGGAG GAGCTGAGGC ACCGGCGGGC GCAGATGCCC 001680 001681 ACTCCCAAGG CCATTGACTG CCGAAAATGT TTTGGAGCAC CTCCAGAATG CTAGAGACCT TAAGCTTCCC TCTCCAGCCT 001760 001761 AGGGTGGGGA AGTGAGGAAG AAGGGATTCT AGAGTTAAAC TGCTTCCCTG TTGCCTTCAT GGAGTTGGGA ACAGGCTGGG 001840 001841 AAGGATGCCC AGTCAAAGGC TCCAAGCGAG GACAACAGGA AGAGGGATCC ACTGTTACCA AAAGTCCTGA TTCCCCCATC 001920 001921 ACCAACCTAC CCAGTTTGTT CGTGCTGATG TTGGGGGAGA TCTGGGGGGA GTTGGTACAG CTCTGTTCTT CCCTTGTCCT 002000 002001 ATACCGGGAA CTCCCCTCCA GGGTACCCAC AGATCTGCAT TGCCCTGGTC ATTTTAGAAG TTTTTGTTTT AAAAAACAAC 002080 002081 TGGAAAGATG CAGAGCTACT GAGCCTTTGC CCTGAATGGG AGGTAGGGAT GTCATTCTCC ACCAATAATG GTCCCTCTTC 002160 002161 CCTGACGTTG CTGAAGGAGC CCAAGGCTCT CCATGCCTTT CTACCTAAGT GTTTGtattt tattttaaat tatttattCT 002240 002241 GGAGCCACAG CCCCCTTGCT TATGAGGTTC TTATGGAGAG TGAGAAAGGG AAGGGAAATA GGGCACCATG GTCCGGTGGT 002320 002321 TTGTAGTTCC TTCAAAGTCA GGCACTGGGA GCTAGAGGAG TCTCAAGCTC CCCTTAGGAA GAACTGGTGC CCCCTCCAGT 002400 002401 CCTAATTTTT CTTGCCTGCC CCGCCTTGGG GAATGCCTCA CCCACCCAGG TCCTGACCTG TGCAATAAGG ATTGTTCCCT 002480 002481 GCGAAGTTTT GTTGGATGTA AATATAGTAA AAGCTGCTTC TGTCTTTTTC |
Predicted Small Protein
Name | NONHSAT006556_smProtein_284:568 |
Length | 95 |
Molecular weight | 10222.9328 |
Aromaticity | 0.063829787234 |
Instability index | 45.6393617021 |
Isoelectric point | 9.33306884766 |
Runs | 9 |
Runs residual | 0.0330712303423 |
Runs probability | 0.0480676755186 |
Amino acid sequence | MMRKSWLAGHLMTLTSTQPAPSAPAPLCPCSVSRPLIPGPGAQGRASAVGGNREVKVQKL TPAAIPLQCPQPQICWCQWQQRCSCPWWSWPCAQ |
Secondary structure | LLLHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLEEEEEEEL LLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |