NONHSAT006080

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT006080

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1164 nt

Genomic location

chr1+:147718201..147725437

Exon number

2

Exons

147718201..147718566,147724640..147725437

Genome context

Sequence
000001 TGAATGTCTG GTCCACCGCT CCCCGGCTTC TTTCCCCGCT TTTGCTTTTC CCTTCCCCCG CTCCCGCCCT CCCGCCTCAC 000080
000081 GACCCGACCA CCGCCCAGCT GAGCCCCCGC GGCTCCACTG CGCAGAAGGT GCACTGGAGG CCCTGCCCGT TGCCCGCCCC 000160
000161 GCGGGGTGCC GAGAAGTCAA CCTGAATAAA CGCCTTGTAA AAAGAACTTC CTAATGGAAA AAATATCTTA TGATTTCCAT 000240
000241 TCTCAACGCT CTTCAGAGGA CTAAAAGATA AAGGCCACGA TGGATTCATT CAACAAGTCC TAATCCTGCG CCCTGGTGTG 000320
000321 TGCCAGACCC TGCTCCCCGC GAGGGGATCC ACGAGCGACC CTCACCATTT TGGCACAACG GAAGCGTTAT AATCTTCTAT 000400
000401 TCATTTCTGG CAAGAGTATA AATAAGTTCA AAAACTTTGG AAAATTGTTT GCCTGTATAT TCTAGTGGTA AAACACACAT 000480
000481 ACATATATGC TATGACCCAG AAATTCAACT TTTCTACCCC ATAGACTTGT GCTTTCCAAT ATGATAGCCA CAAACCACGG 000560
000561 GTAGCTATTG AACACTTGAA ATCTTGCTAG TGTCACATGG GGTAATGATA ATACCTTAAA TATATTTAGT TGAATATATA 000640
000641 TTATAAAAAA TAATTTCACC TCTTTCTTTT TACTTTTTAA AACATGTCTA CTAATACATT TAAAAGTACG TATATGCCTG 000720
000721 GCATTATATT TCTATTGGAA TTTCTATTTC TAGAGAAACG TGAATATGGT TTACCAAAGA CATGTAAAAC AAATACATAT 000800
000801 TTATTCAAAA TATTCCTAAA CTATAAAGAA TTCAAATGTC TGAGGAAAGA AAAGAAATTT TATGTGAGGA AAGTGAGTGC 000880
000881 TTTCAAATTA ACAAGCCCAG AGTTAGGCAT TAAAATGAGA CAGCAACAAC GTCTTATGTC CCTGTTTTGA AGCCGTGTAT 000960
000961 TCATCTATTA AAACAGCTTG CTATCATCAC AAGTGGCTAT AAAGCAACCT AAACATGCTG CACTGGACAC CATCTCTCAC 001040
001041 TCCCTGTAGC TGAACAATGT ATAGCTAATC ATTAATCAAT GTTATTTCTG TAAACTTCAG GGAGTTCCTG ACAGGCAATT 001120
001121 TTGTACCAGC CAACTCCCCG TCTCCCTTTT TGGTCTTTAG AAAC
[back to top]

Predicted Small Protein

Name NONHSAT006080_smProtein_683:949
Length 89
Molecular weight 10670.7117
Aromaticity 0.170454545455
Instability index 42.6876136364
Isoelectric point 10.0122680664
Runs 15
Runs residual 0.0390909090909
Runs probability 0.03471118177
Amino acid sequence MSTNTFKSTYMPGIIFLLEFLFLEKREYGLPKTCKTNTYLFKIFLNYKEFKCLRKEKKFY
VRKVSAFKLTSPELGIKMRQQQRLMSLF
Secondary structure LLLLLLLLLLLHHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHLLLHHHHHHHHLLEE
EEEELEEEELLHHHLHHHHHHHHHHHLL
PRMN -
PiMo -