NONHSAT006080
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT006080 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1164 nt |
Genomic location |
chr1+:147718201..147725437 |
Exon number |
2 |
Exons |
147718201..147718566,147724640..147725437 |
Genome context |
|
Sequence |
000001 TGAATGTCTG GTCCACCGCT CCCCGGCTTC TTTCCCCGCT TTTGCTTTTC CCTTCCCCCG CTCCCGCCCT CCCGCCTCAC 000080
000081 GACCCGACCA CCGCCCAGCT GAGCCCCCGC GGCTCCACTG CGCAGAAGGT GCACTGGAGG CCCTGCCCGT TGCCCGCCCC 000160 000161 GCGGGGTGCC GAGAAGTCAA CCTGAATAAA CGCCTTGTAA AAAGAACTTC CTAATGGAAA AAATATCTTA TGATTTCCAT 000240 000241 TCTCAACGCT CTTCAGAGGA CTAAAAGATA AAGGCCACGA TGGATTCATT CAACAAGTCC TAATCCTGCG CCCTGGTGTG 000320 000321 TGCCAGACCC TGCTCCCCGC GAGGGGATCC ACGAGCGACC CTCACCATTT TGGCACAACG GAAGCGTTAT AATCTTCTAT 000400 000401 TCATTTCTGG CAAGAGTATA AATAAGTTCA AAAACTTTGG AAAATTGTTT GCCTGTATAT TCTAGTGGTA AAACACACAT 000480 000481 ACATATATGC TATGACCCAG AAATTCAACT TTTCTACCCC ATAGACTTGT GCTTTCCAAT ATGATAGCCA CAAACCACGG 000560 000561 GTAGCTATTG AACACTTGAA ATCTTGCTAG TGTCACATGG GGTAATGATA ATACCTTAAA TATATTTAGT TGAATATATA 000640 000641 TTATAAAAAA TAATTTCACC TCTTTCTTTT TACTTTTTAA AACATGTCTA CTAATACATT TAAAAGTACG TATATGCCTG 000720 000721 GCATTATATT TCTATTGGAA TTTCTATTTC TAGAGAAACG TGAATATGGT TTACCAAAGA CATGTAAAAC AAATACATAT 000800 000801 TTATTCAAAA TATTCCTAAA CTATAAAGAA TTCAAATGTC TGAGGAAAGA AAAGAAATTT TATGTGAGGA AAGTGAGTGC 000880 000881 TTTCAAATTA ACAAGCCCAG AGTTAGGCAT TAAAATGAGA CAGCAACAAC GTCTTATGTC CCTGTTTTGA AGCCGTGTAT 000960 000961 TCATCTATTA AAACAGCTTG CTATCATCAC AAGTGGCTAT AAAGCAACCT AAACATGCTG CACTGGACAC CATCTCTCAC 001040 001041 TCCCTGTAGC TGAACAATGT ATAGCTAATC ATTAATCAAT GTTATTTCTG TAAACTTCAG GGAGTTCCTG ACAGGCAATT 001120 001121 TTGTACCAGC CAACTCCCCG TCTCCCTTTT TGGTCTTTAG AAAC |
Predicted Small Protein
Name | NONHSAT006080_smProtein_683:949 |
Length | 89 |
Molecular weight | 10670.7117 |
Aromaticity | 0.170454545455 |
Instability index | 42.6876136364 |
Isoelectric point | 10.0122680664 |
Runs | 15 |
Runs residual | 0.0390909090909 |
Runs probability | 0.03471118177 |
Amino acid sequence | MSTNTFKSTYMPGIIFLLEFLFLEKREYGLPKTCKTNTYLFKIFLNYKEFKCLRKEKKFY VRKVSAFKLTSPELGIKMRQQQRLMSLF |
Secondary structure | LLLLLLLLLLLHHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHLLLHHHHHHHHLLEE EEEELEEEELLHHHLHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |