NONHSAT005431

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT005431

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1828 nt

Genomic location

chr1-:116947336..116961205

Exon number

3

Exons

116947336..116948770,116949550..116949817,116961081..116961205

Genome context

Sequence
000001 CGGAAGCTCC CACCTGAGCG GCGCATCCTC AGGGCCTGGG CCTGGCCTCC TTGCCTGTGA GATGGCACTG TGACGGTGCC 000080
000081 CACCTCGTGG GGTGTGTGAG GGCCGAGTGA AATCGTGCAT TTGCGATGTC TAGGACACAC TGGATTTGTA CATCTGGGGC 000160
000161 TCAGGAGAGG ACCAGATCAG AGCTGGAAAT CATGCCAGGA AGAGTATGAA GCAGGGAGAG AAGGTGTGGA GGCCTCCCTG 000240
000241 AGGAAACGAG GGGTCGAGCA GGTGAAGAGG GGGCTGAGAG CTAAGGAGTG CACAGAGACA ATGACAGAAA GACGGGAGGT 000320
000321 CTGGTTTCAG GAAGGGTGTG ATGGACAGAA GAGATGCAGC AGAGGTCAAG GAAGGACCAA GATGCATCAG GAGGAAATGC 000400
000401 CCATGACCTT CATCGCAGCA GCGTATGTGC GTTGGTCTTC TCCAGGGATG CCGAAAGTAG ACATACAGGG AGTCGCAGTA 000480
000481 CGGATACCAC CAGTGCCAGC CTGACCTCAC AAGAGACGTC TTGTGTGACT GGCCCTGCCG TCACAGCTGG GCCAGTAAAG 000560
000561 TACCTTCCAG GAGGCTCCAG TTGCTACCTG ACTCACAACC TTCTAATCCC ATGATCTTTT AGTTCTAGTT TCCTTATCTT 000640
000641 GGTCTGAGCA AATGGCTCAT TTTAAAGATG ACTTGCAGAC AAATGTAGAG ATCATCCCAG GGGAAAGTGC CCCAAGAAAG 000720
000721 GAGAGTCCAA GACCACCTGC CCCTCCCAGT TCTGCGGCTG GAGTGGGTGG GTGCAGCAAC CACAGCCCCA GTGTACAGGA 000800
000801 GTCACCACTG TCTCCTCCCG CATTGGCCCA GCTTGGAAGT GCACAGCAAC CAAGCATGAG GACTGAGTTA AGCTTTTCGG 000880
000881 AGAAAAAAGA CACTATGATC ATCTGGCAGA TCACGATCAC TGTTTGGTGC CAGAGGTAAG GAGTTTGCTT GTTGTGTTTG 000960
000961 CTTGGAGGCG ACAGTTGGCA ATGACAGCCT GGGAGAAGCA CCGGCAGTTA ACAGCACTCT GCACCACTCA TGGCTGAGAC 001040
001041 TGAGGGGAGC CTTTTACAGC AGCTCTGAAA GCAGGAGGTG TTCTCAGACT TGACCCTGAA GTAAACACAT CTCTTTCACC 001120
001121 TTTTTCTTAA GTGCTTGCTG GCACATAACC ACTTGCTGAA ATTGTGTCAT TGATGCTAAA TTAGGAACAC ATTATATGGA 001200
001201 AGGAAGGGAA CCACTTCTCA GCACACATGC CCAGGCAGAC TGTGTGGGAT AGATTTCTGC TTCTCAGATA AGCCCTGGGC 001280
001281 TAGAGACACT TGAGATGTGG TGGTGATCTC TGGAGGGAAA GCAGGAAGGC TTCAGGTCTC TTTTAGACTG AAAGAGAAGG 001360
001361 GCCTCATCTG CAGTTTAGTA TACTCTGAGG GTCTGGAAAT CCTTTAGGCG AGGTGCTCTT CCATCAAAAA GCCAGATGCT 001440
001441 AAGGCAGCAG GTGGAGTTAC AGCCCTATCA CCCCAGGCAG CAGCCAGAAA AAATGGGTCA GGTAAACTCA CCTACTCCAA 001520
001521 CTAAAAGAGC ACGGGCAGAA TGCTTCCTCT TAGCCAGTGG TTTCCAAACT TGAATGTAAA TCAAAATCAC CTGAGGGCTT 001600
001601 ATTAAGCCAC ATTGCTGATG CATTTCTGAC TCAGTGGGTC TGGGCCCGCC TTCCTAGCAA GCAACCAGGT GATGCTGATA 001680
001681 AACTGCTGGT CAGGGACTCA TGTTGAAAAC CACAGCTCCA GATCACATAG ACATCTGTAC CAAAGAAGCG ACGAGGGCAC 001760
001761 AGACAAATTC CATTATAATA GCCATCTTTA TTTGTAAAAA TCCAGATATA AAATGTATTC TTTCAGTC
[back to top]

Predicted Small Protein

Name NONHSAT005431_smProtein_353:613
Length 87
Molecular weight 9063.8615
Aromaticity 0.0348837209302
Instability index 61.038372093
Isoelectric point 7.79388427734
Runs 15
Runs residual 0.034796945505
Runs probability 0.0467231937821
Amino acid sequence MQQRSRKDQDASGGNAHDLHRSSVCALVFSRDAESRHTGSRSTDTTSASLTSQETSCVTG
PAVTAGPVKYLPGGSSCYLTHNLLIP
Secondary structure LLLLLLLLLLLLLLLHHHHLLLLEEEEEEEELLLLLLLLLLLLLLLEEEELLLEEEEELL
LLLLLLLEEELLLLLEEEEELLEELL
PRMN -
PiMo -