NONHSAT005431
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005431 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1828 nt |
Genomic location |
chr1-:116947336..116961205 |
Exon number |
3 |
Exons |
116947336..116948770,116949550..116949817,116961081..116961205 |
Genome context |
|
Sequence |
000001 CGGAAGCTCC CACCTGAGCG GCGCATCCTC AGGGCCTGGG CCTGGCCTCC TTGCCTGTGA GATGGCACTG TGACGGTGCC 000080
000081 CACCTCGTGG GGTGTGTGAG GGCCGAGTGA AATCGTGCAT TTGCGATGTC TAGGACACAC TGGATTTGTA CATCTGGGGC 000160 000161 TCAGGAGAGG ACCAGATCAG AGCTGGAAAT CATGCCAGGA AGAGTATGAA GCAGGGAGAG AAGGTGTGGA GGCCTCCCTG 000240 000241 AGGAAACGAG GGGTCGAGCA GGTGAAGAGG GGGCTGAGAG CTAAGGAGTG CACAGAGACA ATGACAGAAA GACGGGAGGT 000320 000321 CTGGTTTCAG GAAGGGTGTG ATGGACAGAA GAGATGCAGC AGAGGTCAAG GAAGGACCAA GATGCATCAG GAGGAAATGC 000400 000401 CCATGACCTT CATCGCAGCA GCGTATGTGC GTTGGTCTTC TCCAGGGATG CCGAAAGTAG ACATACAGGG AGTCGCAGTA 000480 000481 CGGATACCAC CAGTGCCAGC CTGACCTCAC AAGAGACGTC TTGTGTGACT GGCCCTGCCG TCACAGCTGG GCCAGTAAAG 000560 000561 TACCTTCCAG GAGGCTCCAG TTGCTACCTG ACTCACAACC TTCTAATCCC ATGATCTTTT AGTTCTAGTT TCCTTATCTT 000640 000641 GGTCTGAGCA AATGGCTCAT TTTAAAGATG ACTTGCAGAC AAATGTAGAG ATCATCCCAG GGGAAAGTGC CCCAAGAAAG 000720 000721 GAGAGTCCAA GACCACCTGC CCCTCCCAGT TCTGCGGCTG GAGTGGGTGG GTGCAGCAAC CACAGCCCCA GTGTACAGGA 000800 000801 GTCACCACTG TCTCCTCCCG CATTGGCCCA GCTTGGAAGT GCACAGCAAC CAAGCATGAG GACTGAGTTA AGCTTTTCGG 000880 000881 AGAAAAAAGA CACTATGATC ATCTGGCAGA TCACGATCAC TGTTTGGTGC CAGAGGTAAG GAGTTTGCTT GTTGTGTTTG 000960 000961 CTTGGAGGCG ACAGTTGGCA ATGACAGCCT GGGAGAAGCA CCGGCAGTTA ACAGCACTCT GCACCACTCA TGGCTGAGAC 001040 001041 TGAGGGGAGC CTTTTACAGC AGCTCTGAAA GCAGGAGGTG TTCTCAGACT TGACCCTGAA GTAAACACAT CTCTTTCACC 001120 001121 TTTTTCTTAA GTGCTTGCTG GCACATAACC ACTTGCTGAA ATTGTGTCAT TGATGCTAAA TTAGGAACAC ATTATATGGA 001200 001201 AGGAAGGGAA CCACTTCTCA GCACACATGC CCAGGCAGAC TGTGTGGGAT AGATTTCTGC TTCTCAGATA AGCCCTGGGC 001280 001281 TAGAGACACT TGAGATGTGG TGGTGATCTC TGGAGGGAAA GCAGGAAGGC TTCAGGTCTC TTTTAGACTG AAAGAGAAGG 001360 001361 GCCTCATCTG CAGTTTAGTA TACTCTGAGG GTCTGGAAAT CCTTTAGGCG AGGTGCTCTT CCATCAAAAA GCCAGATGCT 001440 001441 AAGGCAGCAG GTGGAGTTAC AGCCCTATCA CCCCAGGCAG CAGCCAGAAA AAATGGGTCA GGTAAACTCA CCTACTCCAA 001520 001521 CTAAAAGAGC ACGGGCAGAA TGCTTCCTCT TAGCCAGTGG TTTCCAAACT TGAATGTAAA TCAAAATCAC CTGAGGGCTT 001600 001601 ATTAAGCCAC ATTGCTGATG CATTTCTGAC TCAGTGGGTC TGGGCCCGCC TTCCTAGCAA GCAACCAGGT GATGCTGATA 001680 001681 AACTGCTGGT CAGGGACTCA TGTTGAAAAC CACAGCTCCA GATCACATAG ACATCTGTAC CAAAGAAGCG ACGAGGGCAC 001760 001761 AGACAAATTC CATTATAATA GCCATCTTTA TTTGTAAAAA TCCAGATATA AAATGTATTC TTTCAGTC |
Predicted Small Protein
Name | NONHSAT005431_smProtein_353:613 |
Length | 87 |
Molecular weight | 9063.8615 |
Aromaticity | 0.0348837209302 |
Instability index | 61.038372093 |
Isoelectric point | 7.79388427734 |
Runs | 15 |
Runs residual | 0.034796945505 |
Runs probability | 0.0467231937821 |
Amino acid sequence | MQQRSRKDQDASGGNAHDLHRSSVCALVFSRDAESRHTGSRSTDTTSASLTSQETSCVTG PAVTAGPVKYLPGGSSCYLTHNLLIP |
Secondary structure | LLLLLLLLLLLLLLLHHHHLLLLEEEEEEEELLLLLLLLLLLLLLLEEEELLLEEEEELL LLLLLLLEEELLLLLEEEEELLEELL |
PRMN | - |
PiMo | - |