NONHSAT005312

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT005312

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3140 nt

Genomic location

chr1+:113577443..113580582

Exon number

1

Exons

113577443..113580582

Genome context

Sequence
000001 TCCATGGCCA GGCACttttt aagataattt acataaattt taaaagtagt attagtaaaa aaagaataat attttaattt 000080
000081 ataaaaCATT ACTCTCATTT TATAAATTAG AAAACTCAgg ccaggcgcaa tggctcatgc ttgtaatccc aacaccttgg 000160
000161 gaggccgagg tgggcagatc acaaggtcag gagttcgaga ccagcctgac taaactgttt ttagtttcta ctaaaaatac 000240
000241 aaaaattagc caggcatgat atcatgcgtg cctgtagtcc cagctactcg ggaAAAGAAA AAGAAAAAAG AGAGAAAAAA 000320
000321 AAagaaaact gaggcacaga gagattcagt accttgccca agagtgccca agtatttgtg tacatgactg agtcaggctg 000400
000401 tgtgactcca aggTGAGTAA CCTATGCCAG TTACTGGGAA TGGGCTGAAA GGGTTTGCAA AGGAAGCTGA AGACCATTCT 000480
000481 CACCCTGCCC TGGGGGAATC ATGGAATGGT GCCAAATAGA AAAGGCAAGT TTAGGCTGTT CTAGGTTTCC CCTTCCAGAA 000560
000561 ATGACGTTGG CCTAAAACCA tggtcgtcaa atgtttttgt tcttatattt tgtaagagac ttgaaaaacc atgtaccccc 000640
000641 ttgtacgttt taaagttagc aactgacatt tttcattgta agtttaaaga gctgtaagat agaattactg gctttttgtg 000720
000721 attaatataa taaaactatg aaagcacttt gttttgtttt ttggagaagg agtctcactc tgttgcctag gctggagtgc 000800
000801 aatggcatga tctcggctca ccgcaacctc cgcctcccag gttcaagcga ttctcctgcc tcagcttcct ggctaatttt 000880
000881 tgtattttta gtagagacgg ggttccacct ggctggccag gctggtcttg aactcctgac ctcaggcgat ctgcccgcct 000960
000961 cgacctccca aagtgctggg attacaggct tgagtcactg agcccagccg aaagcaccct tttaaaggaa tctacaggaa 001040
001041 tataaatata gtaatttgat attaccatca tcaatttaga aaattcatga CTACACtttt ttttttaaat ttttatcttt 001120
001121 atatatttat ttgagacaag gtcttgctct gttgtccagc ctagagagca gtggcacatc acagctcact gcagtctcaa 001200
001201 acttctgggc tcaagccatc ctcccagctc TCATATCACA CTCTTTAATT TTACATTATT TCTTTTTTTT TTTTTTGAAA 001280
001281 TCATATTTTG AATCCATTTC TATGTAATCT TGTACTAATA TAATTAGTGA TTAAAAACAT TTTATggccg ggcacagtga 001360
001361 ctcgtgcctg taatctcaac actttgagag gccgaggtgg gcagaccacc tgagatcggg agttcgagac cagcctgacc 001440
001441 aacatggaga aaccccgtct ctactaaaaa tacaaaatta gccgggcatg gtggtgcatt cctgtaatcc cagctactcg 001520
001521 ggaggctgag gcaggagaat cgcttgaacc caggaggcgg aggttgcagt gagccgagat cgtgccatcg cactccagcc 001600
001601 tgggggacaa gagtgagact tcgtctcaaa aaaaaaaatt tggaattgtc cctttgatgc cttacatgct tttttcaccc 001680
001681 cagagtaatg catcatttgt caggattagg gaagagtaag agataaactt tttttgataa agtgagaaga gggcaattga 001760
001761 gaaaatgaga tgggaaaaga aaatcagggc tgcagatgtc ctctggggcg catcaaattg aggatctaga aattgatttc 001840
001841 tttgaaacta accactgccc tgtactcctt ggaaagtatt tacataccTA CCCTAACCAC TACTGGCAGC CCTAATGATC 001920
001921 TCCATGTTAA ATGTGTTTCT CCCAGCCACA CCTGCCCAGA GGGAGAAACT GGGTCATGGT AGCAGTAACC AAGCAGTGCT 002000
002001 CTTTGTTCCT TACCCCACCA GATTTACACA ACCTATAACC CTCTCAGTGA TCTTCTGAGT CATTCTGGAG TCTCTGGGGG 002080
002081 TAGATTTCAT ATGCTCACTA ATTGGTCTTC TTGGCCTCTT GGTGGTTTCT GCTCATTTCA TTCATCTCCT ATAGCTTGGC 002160
002161 ACAGTAGAAC TGCTAGCCTC TTAGCTGCCA GAGCCAAACA GACTGTTCCA TGTGAGAAAA CCAACCTCCA GATTCCTGGG 002240
002241 GCGTTTCTGG TGTAGTGACC TTCCAGAGGG AAATCTACCC CTACTCCTAT CCAGTACTCT TCCCTGCCAT GAGGGGATTT 002320
002321 AGAAGGGAAA GCACTCCCTG CTGACAGTTC TTACAGGGGT TTGTGAAACA AATAATCCCA TTTGGTCACC CTTTTGGTTG 002400
002401 AGAAGTGGTG ATAAATGCTC GAAGTGGTCT GAAGTGCCAG GTGCTATAAA AGAACAGAAA GGGGCCTGTG ATCCCTGACT 002480
002481 GCACTTTATA TTTCAGCATT ACCCACTATT TTTTCATATC CCACGACTCA AGATTCCCTC TCAAGtcttt gctctttgat 002560
002561 ctccttgatg aactcacatt cacccttcaa atctcatctc aatcccttct ttcaggatgt gttcccattc cgctaatgcc 002640
002641 cttgagggtt ttctgctatc tccatgcttt tactacattt tggtttattt gctcttacta tatattttct tgttagtctt 002720
002721 tgtatccagt taaactatgg gctcctgagg gtgttgggac tcaggagata ccacatttaa gtatgactgt aggagacaga 002800
002801 aatatgccac cccaaaacat gcctttttgg catattaata atttccggct ggttattttg agaaattgca gacataggag 002880
002881 tagctttgga aagttactct tgtaagagaa aTGTGcagtt gacccttgaa caacatgggt ttgaactgca caggtccact 002960
002961 tatactcaga ttttttcttt tttttgagac aaagtctcac tctgtcaccc aggctggagt gcagtggcac gatcttggct 003040
003041 cactgcaacc tccacttcct gggttcaagc gattatcctg cctcagcctc ctgagtagct gggattactg gtatgcacca 003120
003121 ctacactggc taattttttt
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Predicted Small Protein

Name NONHSAT005312_smProtein_737:1000
Length 88
Molecular weight 9315.6523
Aromaticity 0.0804597701149
Instability index 52.9344827586
Isoelectric point 7.88970947266
Runs 10
Runs residual 0.0233169129721
Runs probability 0.0321674615793
Amino acid sequence MKALCFVFWRRSLTLLPRLECNGMISAHRNLRLPGSSDSPASASWLIFVFLVETGFHLAG
QAGLELLTSGDLPASTSQSAGITGLSH
Secondary structure LLEEEEEEHHHHHLLLLHHHHLLHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH
HHHHHHHLLLLLLLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL
LLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo
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