NONHSAT004105

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT004105

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1986 nt

Genomic location

chr1+:80580628..80582603

Exon number

1

Exons

80580628..80582603

Genome context

Sequence
000001 GTCATTTCAG AGATACCTAT CCTTGAACTA TACCCTGGTA AGAGTGGGCA TCTATTCTTT ATGACAGGAG TCACTATCAA 000080
000081 TATAATTTAG GCCTGCAGAG AGATGTTTTC TGAGAGAAAC CAATAGGACT ATTAACCAGA AGCTAAAGAC AGGTATCACT 000160
000161 ATCACCAGAT GTTATCTATG GAAGACACAT GTAGAGACTC TGCCTGGGAG AAAATGCTGA TTGAAAATTC TCTCTGTCCA 000240
000241 TGTGTGAGTG ATTTTATACA TTTGACTCCC TCTTATGATA GATTTTTCTT AGAAGAAAGA ATAGACCCCA AAAGATTAAT 000320
000321 ATGAAGACTG AGGAGGCTTC ACGAGCATGT CAGGTGATTT ATGGCAGGCT TGAATTGGAG CTTAATCAGA GTGTTACCAG 000400
000401 TAGAGGGTGT CCAGGTTCTT GGCATCTTGA ACAAAGAATT GGACAAAACG CACAAACGAA GCAAGGAAGA AATGAAGGGA 000480
000481 TTGAAAATTA AAGTACACTC CACAATGTGG GAGCAAGCCT GAGCATAGGG GCTCAAGGGC CCCGTTACAG AATTTGTAGG 000560
000561 GGTTTAAATA CCTTCTATGG GTTTCCATTG GTTACTTGGT ATATGCCCTA TGTAAAAGAG AGGATGAAGT AAAGTTACTT 000640
000641 ATATTTGGCG TATGCCCTAT GGAGAGGCTA TTTCCCGTCA TAGCTGAAGT GTGAATCGGC TTTATGTTCC CTTCCCCCAG 000720
000721 ACCCTATTTT CCTGCCTCAT TTTCTCTCTG AGAGACGTGA TCCCCATAAA TCTTTATAAG AGGCAGAGGG ACCCACAGTC 000800
000801 TTTCTTCTAT AACTGCTTCA TGCTGGCTTG AGATGTAGCT CCTACCGACT GAGTATCACA GTACTCACCC TGCTCTGTCT 000880
000881 AGTGGGGACA GGGTTTCCTT GATGGTCAGG GGTGGTGTCT TTCACCTGGA ACTGGCTGGA ACCCTTGTCA CATGATCATC 000960
000961 TGAAGCTTGA TGGTCTCTAG GCAAGAGGAA ATGAATTTCG TTAAAAGATT TAATGGGAAC TTCAAGGAGT GGATACCTGT 001040
001041 GCTGTCAAGA ATGTTTGTTA TAGAGATTTG TATGAGAAAA ACAAAACCTG GTTTGTGTTG TGTTCTAGGA TCTATGTGTT 001120
001121 CCCTTAAAGT CTTAGCTCAA GCAACTCCAT TATAGTTTGG TTTGGTCTGT TGGAGCCTAG TGCATGAGCT CAGTCCAAAA 001200
001201 CAATGGCCTT CCATAACTTT GTTTTAAAAA ATCCCCCTTT TTGGTCAGGT TCTCACTTAG GTGAGAGGGT AACCAAAACT 001280
001281 TAGGGCCTTA ATACCACTCT CAGTTACCAT CATTTTGGGT TTCAGTCTTA GCACATCATT CATAGGTTAT GGTGTCCTCA 001360
001361 TGGTTGCTCA TTTCTTTCAG CTCTTGTTAT TTCCATTGAA GAGAGACCGT ATGACACTCT AGAGATGGCT GCATGCAAAC 001440
001441 ATTCAAAACC TTTGAGAGAA TACAGCATGC CAGGAAGACT ATTATTACGA CTAATGGGAA GATAATACCA AGAATTTGGA 001520
001521 GTATACTCCT TACCCAAGGT CCCCATAAAC TGAACTTCCT AAAATCAAAT AGATCAAAGA ATGAGCTAGA TAAACAGTTT 001600
001601 ACTACTTAAC TAAGCAGTCC CTTTGCAAAT TCTCTACCAC TGAATTTCTA TAATCTTCAT TTGATGTATT TTTCCATAGG 001680
001681 CCACAAGTAT TAGCAGCTGC ACAGATAATT TTCTGTTCAG CAAATTCTAT TATAACTTTC ACAAGACAAT TTAAAGTCTT 001760
001761 TGTGTAACTG TAGCCTTTAC AGTAAAATTT GAGCCTATCA TGAGGTGTAC ATTTCTAATC ATTGCTTTTT CACTTTAAAC 001840
001841 CAAGGAAAAA GGACCTAACA AATGATGCTC TTCTGGAAGA GTGAAGGCCT ACTGGCAATG TTCTCTTTAA CCCATGATGT 001920
001921 GGGCTAAGAG GAGTGAACCA ATAAATAAAA TAATAAAATA ATCCAAATTG AAAAAAAAAA AAAAAA
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Predicted Small Protein

Name NONHSAT004105_smProtein_320:490
Length 57
Molecular weight 6302.919
Aromaticity 0.0357142857143
Instability index 56.9285714286
Isoelectric point 6.54815673828
Runs 11
Runs residual 0.0431303669009
Runs probability 0.0289862054568
Amino acid sequence MKTEEASRACQVIYGRLELELNQSVTSRGCPGSWHLEQRIGQNAQTKQGRNEGIEN
Secondary structure LLHHHHHHHHHEEELEEEEEELLEEELLLLLLLLHHHHEELLLLLLLLLLLLLLLL
PRMN -
PiMo -