NONHSAT004105
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004105 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1986 nt |
Genomic location |
chr1+:80580628..80582603 |
Exon number |
1 |
Exons |
80580628..80582603 |
Genome context |
|
Sequence |
000001 GTCATTTCAG AGATACCTAT CCTTGAACTA TACCCTGGTA AGAGTGGGCA TCTATTCTTT ATGACAGGAG TCACTATCAA 000080
000081 TATAATTTAG GCCTGCAGAG AGATGTTTTC TGAGAGAAAC CAATAGGACT ATTAACCAGA AGCTAAAGAC AGGTATCACT 000160 000161 ATCACCAGAT GTTATCTATG GAAGACACAT GTAGAGACTC TGCCTGGGAG AAAATGCTGA TTGAAAATTC TCTCTGTCCA 000240 000241 TGTGTGAGTG ATTTTATACA TTTGACTCCC TCTTATGATA GATTTTTCTT AGAAGAAAGA ATAGACCCCA AAAGATTAAT 000320 000321 ATGAAGACTG AGGAGGCTTC ACGAGCATGT CAGGTGATTT ATGGCAGGCT TGAATTGGAG CTTAATCAGA GTGTTACCAG 000400 000401 TAGAGGGTGT CCAGGTTCTT GGCATCTTGA ACAAAGAATT GGACAAAACG CACAAACGAA GCAAGGAAGA AATGAAGGGA 000480 000481 TTGAAAATTA AAGTACACTC CACAATGTGG GAGCAAGCCT GAGCATAGGG GCTCAAGGGC CCCGTTACAG AATTTGTAGG 000560 000561 GGTTTAAATA CCTTCTATGG GTTTCCATTG GTTACTTGGT ATATGCCCTA TGTAAAAGAG AGGATGAAGT AAAGTTACTT 000640 000641 ATATTTGGCG TATGCCCTAT GGAGAGGCTA TTTCCCGTCA TAGCTGAAGT GTGAATCGGC TTTATGTTCC CTTCCCCCAG 000720 000721 ACCCTATTTT CCTGCCTCAT TTTCTCTCTG AGAGACGTGA TCCCCATAAA TCTTTATAAG AGGCAGAGGG ACCCACAGTC 000800 000801 TTTCTTCTAT AACTGCTTCA TGCTGGCTTG AGATGTAGCT CCTACCGACT GAGTATCACA GTACTCACCC TGCTCTGTCT 000880 000881 AGTGGGGACA GGGTTTCCTT GATGGTCAGG GGTGGTGTCT TTCACCTGGA ACTGGCTGGA ACCCTTGTCA CATGATCATC 000960 000961 TGAAGCTTGA TGGTCTCTAG GCAAGAGGAA ATGAATTTCG TTAAAAGATT TAATGGGAAC TTCAAGGAGT GGATACCTGT 001040 001041 GCTGTCAAGA ATGTTTGTTA TAGAGATTTG TATGAGAAAA ACAAAACCTG GTTTGTGTTG TGTTCTAGGA TCTATGTGTT 001120 001121 CCCTTAAAGT CTTAGCTCAA GCAACTCCAT TATAGTTTGG TTTGGTCTGT TGGAGCCTAG TGCATGAGCT CAGTCCAAAA 001200 001201 CAATGGCCTT CCATAACTTT GTTTTAAAAA ATCCCCCTTT TTGGTCAGGT TCTCACTTAG GTGAGAGGGT AACCAAAACT 001280 001281 TAGGGCCTTA ATACCACTCT CAGTTACCAT CATTTTGGGT TTCAGTCTTA GCACATCATT CATAGGTTAT GGTGTCCTCA 001360 001361 TGGTTGCTCA TTTCTTTCAG CTCTTGTTAT TTCCATTGAA GAGAGACCGT ATGACACTCT AGAGATGGCT GCATGCAAAC 001440 001441 ATTCAAAACC TTTGAGAGAA TACAGCATGC CAGGAAGACT ATTATTACGA CTAATGGGAA GATAATACCA AGAATTTGGA 001520 001521 GTATACTCCT TACCCAAGGT CCCCATAAAC TGAACTTCCT AAAATCAAAT AGATCAAAGA ATGAGCTAGA TAAACAGTTT 001600 001601 ACTACTTAAC TAAGCAGTCC CTTTGCAAAT TCTCTACCAC TGAATTTCTA TAATCTTCAT TTGATGTATT TTTCCATAGG 001680 001681 CCACAAGTAT TAGCAGCTGC ACAGATAATT TTCTGTTCAG CAAATTCTAT TATAACTTTC ACAAGACAAT TTAAAGTCTT 001760 001761 TGTGTAACTG TAGCCTTTAC AGTAAAATTT GAGCCTATCA TGAGGTGTAC ATTTCTAATC ATTGCTTTTT CACTTTAAAC 001840 001841 CAAGGAAAAA GGACCTAACA AATGATGCTC TTCTGGAAGA GTGAAGGCCT ACTGGCAATG TTCTCTTTAA CCCATGATGT 001920 001921 GGGCTAAGAG GAGTGAACCA ATAAATAAAA TAATAAAATA ATCCAAATTG AAAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT004105_smProtein_320:490 |
Length | 57 |
Molecular weight | 6302.919 |
Aromaticity | 0.0357142857143 |
Instability index | 56.9285714286 |
Isoelectric point | 6.54815673828 |
Runs | 11 |
Runs residual | 0.0431303669009 |
Runs probability | 0.0289862054568 |
Amino acid sequence | MKTEEASRACQVIYGRLELELNQSVTSRGCPGSWHLEQRIGQNAQTKQGRNEGIEN |
Secondary structure | LLHHHHHHHHHEEELEEEEEELLEEELLLLLLLLHHHHEELLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |