NONHSAT003808
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003808 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2232 nt |
Genomic location |
chr1+:68297971..68668670 |
Exon number |
10 |
Exons |
68297971..68298119,68500330..68500446,68537483..68537556,68564326..68564519,68565412..68565475,68566381..68566457,68583134..68583415,68586808..68586924,68603980..68604133,68667652..68668670 |
Genome context |
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Sequence |
000001 ACTTGTTTGT ATACAACCAC GCCCGGCAGG ATGACCACCA GATGACCGGC CGCAGCAATG CCTCCACTCA GTCCCAGTTG 000080
000081 GGCAAAGTTT CACTCCACTG CGGCGACGTG AACAAGAATC ACGGCTTCCT TATCGTACCT GCCACAACAC ATGGGAATTA 000160 000161 TGGGAGTACA ATTTAAGATG AGATATGGAT GAGAACACAG AGCCAAACCA TATCAACTCT ATCTTCATGT TTGTTTACAT 000240 000241 TTCTCTCAAC TGTATGTTTT GTGACCCAGA ATGTGATCCT GGTAAACATT CCATTTGAGA AGAATGTGTA TTCTGCTGTT 000320 000321 GTTGGAAGCT GCGTTGTCAT TGATGAAGGA ATATTTCGAA GCGCTGAACA ATTCTTGATA AAGTTCCGAA ACAAACAAAG 000400 000401 CACAATCTTC CCTCGATTTA CATGGGAGTT GCATTCCTGG AAAATTCAGT ATATTTTAAA ACCATGCAAA ATATCCTTTT 000480 000481 AAAAAAATAT GTAACATGGA GTTTAGGACC AAGGCTCAGA ATATTTCCAA TCCATGGTTG GGTGCGGAAC CTGCGGATAC 000560 000561 AGAGGACTGA CTATAATATC AAGAGATCAT AAGGCTGTCG GAATGGACTC TTTGTGGCAA TAAGATACCA TATTATAAAC 000640 000641 AGGACCCAAG GTCATGCCAG GAGGCTCGTG TGGTCCCTGT TTGTCATCCA GTCAATACGG CCATCAGCTT CTGGCCCCAG 000720 000721 ACACCTTTCC TCTGCACTGT GGCACAGAGG AGCAGACTGC TTTGGAGGGC AGCTTCCTGG GAGCTCCAGG GACCCTGGCC 000800 000801 AGGCGGCCAC TGCCACTGAC TTCCTCGGCT CACTGAGCCC GTGCCTGCAG CTCTCGTGTT TCCTCTGTGC TGCAGTGGAC 000880 000881 GCTTATCTTC CCCCGATGGC ACATTTCTTT GTCACAGACA GGACCCTCAC TGGCAGTCGG AGGACATCAA GCCCTAGTAC 000960 000961 AGGAAGGGAC ATTTTCACAC TAATCTGTGC CAGCTGGAGC AGTCCTGCCA TCTGAACATC ATATTTTGGA ACCCTGAGAA 001040 001041 GCTAGGATGC AGTTAACAGC TAGATGTCAA TTCCCTGCAG GCAGAGACCA GTTCTCTGCT GCCATGTCTT TAAGGCCTGA 001120 001121 TGCACCATAG ATTAATTCAA ATCCAGTGTC TACCACTCAC TCGGCTTAAT GTAAGACAAG ATGAAGACTC CAGACTTCAG 001200 001201 AACTTCAGTG TCCGCAGATG AGGATTTTAA ATGCTTCGCC TACAACCTCA ATTGTTGTGG AGCCAAAGAT GCAACAGCTT 001280 001281 TGAAGAATAG AAGAATTACT CTATATTTGT CAGGATCTAC GTGGCAAACA AGCGCCACTT GGCTTACATT ACTTGCCTGG 001360 001361 CTTGGATCCC ATGGAATGGA GGAGCATTGG AACCAAGAGG AAAAAAATTA AAGTGCTTTG GGACAGCGAG CCAAACTCTT 001440 001441 ACATAGTATT TGAAATGGTG TGGCAAACAT GAAATTATTT TAGGCTCAAG ATTGGTGCTA GTTTTTTACC CTCTTTTTGA 001520 001521 AAAAATAGTA AAATGCACAT AAAGGGCCCT GCCAGAGGTT TAGCTCATAA AATCTGCCAA TCATTGGATG TGCTAATTGG 001600 001601 TGTAGCAATC CAGTGGTGGC CTGGATTAGG ACTCAAAAAC TGACCCTTAC CACCCTTGGT GTCCTGCAGC AAAGACAGCC 001680 001681 TAAATCGAAA AGACTGATGG AAGTATATCA AATTACGAAT TTCTCTATCC CTGAAAAATG CCTGCAATTT CTGTTTCTCC 001760 001761 ATCACTCCAG AAATACTCAA AACAGCAAAA ATTAAATACA TATGAAGTGA ACACAAAAGA CCTCCACAGA AAAATCAGTG 001840 001841 GCTCATCTGT TGACGCTATT GCTCATTGCT CGGCTGGCCA GTCATCTGGG CTAAGTTTTG ACTTTGGGCC AGTGCTTCAA 001920 001921 AATCAGCAAC CTTTCAGCCA AAAGACTGTG GAATGCAGCC AAGACCACCT GTGGAAAGTG AATTATAGCA TCTTTAATTT 002000 002001 ACTACCTTGG GCTATGATGT CAGAAACCCA GCATGGAGGG CGCACCAGTT CTTGTGTGGG AAATCTCTCA GAGCCCCCAT 002080 002081 GGAGGCCCCC AAAGTGGCTC TGGCAAAGCT GTAGGGGTGG AGGTAACAAA AAAGGGGACA CCTGGCTCTC CTTCTTAAAT 002160 002161 CAGCTCACCA TGGGCACACA TTTATATTGG AATTTTAGGG TCAGAAAATA CCAAAATTAA ATCTTCTAGA AG |
Predicted Small Protein
Name | NONHSAT003808_smProtein_188:481 |
Length | 98 |
Molecular weight | 11250.0757 |
Aromaticity | 0.144329896907 |
Instability index | 42.2989690722 |
Isoelectric point | 9.30047607422 |
Runs | 14 |
Runs residual | 0.0127911416571 |
Runs probability | 0.0759393847631 |
Amino acid sequence | MRTQSQTISTLSSCLFTFLSTVCFVTQNVILVNIPFEKNVYSAVVGSCVVIDEGIFRSAE QFLIKFRNKQSTIFPRFTWELHSWKIQYILKPCKISF |
Secondary structure | LLLLLEEEEEHHHHHEEEEEEEEEEEEEEEEEEELLLLLEEEEEEEEEEEELLLHHHHHH HHHHHHHLLLLLEELLLLLHHHHHHHHEEELLLLLLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTToooo ooooooooooooooooooooooooooooooooooooo |