NONHSAT003731

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT003731

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2527 nt

Genomic location

chr1+:65695311..65697819

Exon number

1

Exons

65695311..65697819

Genome context

Sequence
000001 GAGTCTTAGT TTTCCTGCAT AAGACCTCCT TTATGAATAG AATAAAAGAC TGTCAAAGTA GGCTGGGCTT GGGCCCAGGC 000080
000081 TAATCTATGA AGGAAGCAAG CTCGTGTTCC TTACCTATCC TTTTGGTGTC CATTGGATTG TGCCCCGAAG TGGCCTTTAC 000160
000161 CCTTGAGCCG TCCCCAGCCA TGGTGCTCAC ACATAGGCTT TTGAGCTCCT TGGAGCTATC CAGATCCTGC TCACTTTTCC 000240
000241 TTCCTGAGGT CAGAACAAAT CACCCCCTTA CTCCCACTCC AAACAAGGCC TTGATGATAA ACTAATCCTT CCTAAAATGC 000320
000321 TGGTAGGTAA ACAAGCAATG ATGAAGCATT GAACACAGGT TAACTCCTGA CTTTTGTACC ATTGTCTATT CCATTACACA 000400
000401 TTAACATGAC TCTGAATGCC AGATCCAAAC CTTTGCCCAC CATCTGCTTG TCGTGCAACA GTTGAGGCAG TAACCAGGGG 000480
000481 AGATTCACTT CCTGTCTTGT CCTTCCCCAG GGATCACCCC CCTGCTGCCC TCTAGCAGCC AAGCTCAGAT GAGTTCCATT 000560
000561 GTTACCCTAG GTGTGCCCAT CTCTTTGGTA GGGAAGGAGA AAGGTAAGAA TAGCCATCAA TGAGGAAGGA TTCTTGGAGC 000640
000641 GAGGAGCCAC TGTGGTTTTT CCTGCTATTT AAGATGTTGA GACCGGATAA CTTTAGAAAG ATACCTGCAC AAACCCATAA 000720
000721 ATACTGCTTT TATAAAGTTT AGTTCACCGG AACCTGAGTT CAGTATTTGA CATTAGCTTT TTGTCCAAAG AGTTGAAGCC 000800
000801 TGCTGGAGGT CTTTGCTCAA ATAATAAATA CCACATATTT CCAAGTGTGT TCAGGTATAG GCACTAGGTA CTGTCTGTTT 000880
000881 ACTTCATGTT AGGCACATTA CATGCATTGG CTAATCAAAT CCTCATCAAT TACATATGTA ATAATCTAAA CTTGCCTCCT 000960
000961 TGTATTATAA ATGGAAATAA TCCTGTTTAT TTAAACGGGT TTTCATGTAC CTGTAGGGAT TAGGAAACTC AAATGGCCTT 001040
001041 TTTAATACCT TTCCCTAGTT TGAGCTCCCT GTTCTCTTTA ACAGATAAAA CAACATATTT GCTTCAGCCT GGAATCTGTT 001120
001121 TTTGGTGCTT TGGTGCAGAG ACAGGAAATG GGCACTCAGA GTCACACTGG TAGTTGCACA CTGTATCTAC AGAGGGCGTG 001200
001201 TCTCATCTGT ACTCTGCTGG GTTACAGGAT TTCAGTAGGT ATTTGTGTCC ACCTGAGAAT TCTGTTTATT ACCTTTCATT 001280
001281 TGACAGTGTC TTTCCTTTCT GCAGTTGATT TTGCTAGAGA GGCAATTCAT AAGGTGAGGT CCTGTTCATA GTATGACTTG 001360
001361 CTTTCTCAAT ATCTCCTTCA ATTTTTAGTA ACTCTTGGTC TATTTGGTGT CTTTAAAAAA AATAACCTAG TAATAAAGAC 001440
001441 TTCTTTTAAT GTGGAAATGT GGTCTGGTAG TAAGTTATTT CTTTCCACAT GTAACTGACC CAATCTGGCT TCCAAATGAG 001520
001521 AAGTGTGCAG GCCCCAGAGG TTGAGAAGCC ATATTTCAAC TGTGAAAAAA ATCTGCTTCC TGCATCTGTT GAAATATAGT 001600
001601 TGTTCATACT TGCCATCCCT TATCTTTCTT GTAACAATTT GCACAGTTCT TGCCAGAATA AATGCCATTA TCTGTATGTT 001680
001681 TCAGGGAGTT CCCCAATTTG ATCATTTTTG TGTGTGTGTG GTGTGTGTGT GAGAGAGAGA GATACTGCAG TAAAACATTT 001760
001761 CTAAAGGATG AAAGCTCTTG TATGGCATAG ATATGAATTC CTTCCTCTGG TAATAATTAG GTTATTCCCA GAAGCACAGT 001840
001841 GTCATTCTTT AAATAAAAGC TTTCCTGTTT AAAGCTTTTC AAAGGAGCAG ACCACCTTGA AGATTCCCCC TAGGGTTGAT 001920
001921 ATGTGTCTAA TTCATTTTAT AAAAATTATT CTTGTCTTCA TTTTAAAGCT TTGGCTATAT AGTCAGAAAT GTCCTAAATA 002000
002001 ACAAACTATT TTGTATTTAA TTTAGGGAAG ACTAAAGGGA AGAAAAATGA AAACTCAGTC TTTATGTAAG CTCCAAGGAT 002080
002081 ATTAGGGCTT AAAGGGCTTT TCTAGTTTTA TGAGAATTTG TACTACTGAT TTTTATATAT TCCTGTTTTT GAGATGAACA 002160
002161 GATCTCTGGG GAAATTGTTG AGTTACAATG GCATTTCACT GTGATCCCTC TCAAGCTCAG ATCAGTTCTA TAACCCAATG 002240
002241 ACAACCTGTC TCTTTGGTTT ACTGTCCTGT GAAATGTCAG CTCAAGTTTC CCAGAAGTCG TGTGTTTATG ATGAGTCAGA 002320
002321 GTGCTTTTCC TCGGTGGGAC AGTTGCTGGC CCTCCTAATT TTGGTGTATG TGCTTCCAAG TATCTAAACC TCCAGTCTGA 002400
002401 TCTGTATATG CTATCCTAAC TGTTAATTGT ATTATTGATT ATGTTGATTA TCTTGCTTGA AGGTTCATAC TTTTCAATTT 002480
002481 GATAGAAATA AAGTTTTTTT CTGCTTATAA AAAAAAAAAA AAAAAAA
[back to top]

Predicted Small Protein

Name NONHSAT003731_smProtein_86:304
Length 73
Molecular weight 7817.2179
Aromaticity 0.0277777777778
Instability index 63.5013888889
Isoelectric point 6.69915771484
Runs 7
Runs residual 0.0436942416869
Runs probability 0.0465970171853
Amino acid sequence MKEASSCSLPILLVSIGLCPEVAFTLEPSPAMVLTHRLLSSLELSRSCSLFLPEVRTNHP
LTPTPNKALMIN
Secondary structure LLLLLLLLLLEEEEELLLLLLEEEELLLLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLL
PRMN -
PiMo -