NONHSAT003731
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003731 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2527 nt |
Genomic location |
chr1+:65695311..65697819 |
Exon number |
1 |
Exons |
65695311..65697819 |
Genome context |
|
Sequence |
000001 GAGTCTTAGT TTTCCTGCAT AAGACCTCCT TTATGAATAG AATAAAAGAC TGTCAAAGTA GGCTGGGCTT GGGCCCAGGC 000080
000081 TAATCTATGA AGGAAGCAAG CTCGTGTTCC TTACCTATCC TTTTGGTGTC CATTGGATTG TGCCCCGAAG TGGCCTTTAC 000160 000161 CCTTGAGCCG TCCCCAGCCA TGGTGCTCAC ACATAGGCTT TTGAGCTCCT TGGAGCTATC CAGATCCTGC TCACTTTTCC 000240 000241 TTCCTGAGGT CAGAACAAAT CACCCCCTTA CTCCCACTCC AAACAAGGCC TTGATGATAA ACTAATCCTT CCTAAAATGC 000320 000321 TGGTAGGTAA ACAAGCAATG ATGAAGCATT GAACACAGGT TAACTCCTGA CTTTTGTACC ATTGTCTATT CCATTACACA 000400 000401 TTAACATGAC TCTGAATGCC AGATCCAAAC CTTTGCCCAC CATCTGCTTG TCGTGCAACA GTTGAGGCAG TAACCAGGGG 000480 000481 AGATTCACTT CCTGTCTTGT CCTTCCCCAG GGATCACCCC CCTGCTGCCC TCTAGCAGCC AAGCTCAGAT GAGTTCCATT 000560 000561 GTTACCCTAG GTGTGCCCAT CTCTTTGGTA GGGAAGGAGA AAGGTAAGAA TAGCCATCAA TGAGGAAGGA TTCTTGGAGC 000640 000641 GAGGAGCCAC TGTGGTTTTT CCTGCTATTT AAGATGTTGA GACCGGATAA CTTTAGAAAG ATACCTGCAC AAACCCATAA 000720 000721 ATACTGCTTT TATAAAGTTT AGTTCACCGG AACCTGAGTT CAGTATTTGA CATTAGCTTT TTGTCCAAAG AGTTGAAGCC 000800 000801 TGCTGGAGGT CTTTGCTCAA ATAATAAATA CCACATATTT CCAAGTGTGT TCAGGTATAG GCACTAGGTA CTGTCTGTTT 000880 000881 ACTTCATGTT AGGCACATTA CATGCATTGG CTAATCAAAT CCTCATCAAT TACATATGTA ATAATCTAAA CTTGCCTCCT 000960 000961 TGTATTATAA ATGGAAATAA TCCTGTTTAT TTAAACGGGT TTTCATGTAC CTGTAGGGAT TAGGAAACTC AAATGGCCTT 001040 001041 TTTAATACCT TTCCCTAGTT TGAGCTCCCT GTTCTCTTTA ACAGATAAAA CAACATATTT GCTTCAGCCT GGAATCTGTT 001120 001121 TTTGGTGCTT TGGTGCAGAG ACAGGAAATG GGCACTCAGA GTCACACTGG TAGTTGCACA CTGTATCTAC AGAGGGCGTG 001200 001201 TCTCATCTGT ACTCTGCTGG GTTACAGGAT TTCAGTAGGT ATTTGTGTCC ACCTGAGAAT TCTGTTTATT ACCTTTCATT 001280 001281 TGACAGTGTC TTTCCTTTCT GCAGTTGATT TTGCTAGAGA GGCAATTCAT AAGGTGAGGT CCTGTTCATA GTATGACTTG 001360 001361 CTTTCTCAAT ATCTCCTTCA ATTTTTAGTA ACTCTTGGTC TATTTGGTGT CTTTAAAAAA AATAACCTAG TAATAAAGAC 001440 001441 TTCTTTTAAT GTGGAAATGT GGTCTGGTAG TAAGTTATTT CTTTCCACAT GTAACTGACC CAATCTGGCT TCCAAATGAG 001520 001521 AAGTGTGCAG GCCCCAGAGG TTGAGAAGCC ATATTTCAAC TGTGAAAAAA ATCTGCTTCC TGCATCTGTT GAAATATAGT 001600 001601 TGTTCATACT TGCCATCCCT TATCTTTCTT GTAACAATTT GCACAGTTCT TGCCAGAATA AATGCCATTA TCTGTATGTT 001680 001681 TCAGGGAGTT CCCCAATTTG ATCATTTTTG TGTGTGTGTG GTGTGTGTGT GAGAGAGAGA GATACTGCAG TAAAACATTT 001760 001761 CTAAAGGATG AAAGCTCTTG TATGGCATAG ATATGAATTC CTTCCTCTGG TAATAATTAG GTTATTCCCA GAAGCACAGT 001840 001841 GTCATTCTTT AAATAAAAGC TTTCCTGTTT AAAGCTTTTC AAAGGAGCAG ACCACCTTGA AGATTCCCCC TAGGGTTGAT 001920 001921 ATGTGTCTAA TTCATTTTAT AAAAATTATT CTTGTCTTCA TTTTAAAGCT TTGGCTATAT AGTCAGAAAT GTCCTAAATA 002000 002001 ACAAACTATT TTGTATTTAA TTTAGGGAAG ACTAAAGGGA AGAAAAATGA AAACTCAGTC TTTATGTAAG CTCCAAGGAT 002080 002081 ATTAGGGCTT AAAGGGCTTT TCTAGTTTTA TGAGAATTTG TACTACTGAT TTTTATATAT TCCTGTTTTT GAGATGAACA 002160 002161 GATCTCTGGG GAAATTGTTG AGTTACAATG GCATTTCACT GTGATCCCTC TCAAGCTCAG ATCAGTTCTA TAACCCAATG 002240 002241 ACAACCTGTC TCTTTGGTTT ACTGTCCTGT GAAATGTCAG CTCAAGTTTC CCAGAAGTCG TGTGTTTATG ATGAGTCAGA 002320 002321 GTGCTTTTCC TCGGTGGGAC AGTTGCTGGC CCTCCTAATT TTGGTGTATG TGCTTCCAAG TATCTAAACC TCCAGTCTGA 002400 002401 TCTGTATATG CTATCCTAAC TGTTAATTGT ATTATTGATT ATGTTGATTA TCTTGCTTGA AGGTTCATAC TTTTCAATTT 002480 002481 GATAGAAATA AAGTTTTTTT CTGCTTATAA AAAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT003731_smProtein_86:304 |
Length | 73 |
Molecular weight | 7817.2179 |
Aromaticity | 0.0277777777778 |
Instability index | 63.5013888889 |
Isoelectric point | 6.69915771484 |
Runs | 7 |
Runs residual | 0.0436942416869 |
Runs probability | 0.0465970171853 |
Amino acid sequence | MKEASSCSLPILLVSIGLCPEVAFTLEPSPAMVLTHRLLSSLELSRSCSLFLPEVRTNHP LTPTPNKALMIN |
Secondary structure | LLLLLLLLLLEEEEELLLLLLEEEELLLLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLL |
PRMN | - |
PiMo | - |