NONHSAT003525
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003525 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2273 nt |
Genomic location |
chr1+:59250832..59366668 |
Exon number |
5 |
Exons |
59250832..59250977,59359217..59359389,59361929..59362057,59364719..59365266,59365392..59366668 |
Genome context |
|
Sequence |
000001 AACAAGCCCA GAAGGCGGCG GACACTCGCA TAAAGTCACG CAGTAGTACT CGGAGCCCGG GGTAGAACCT GGACTTCAAA 000080
000081 TCTCTGCACT CCCGGCCGGG TGGTGGGCGC ATATCCTGGG TAGCCTCTAG GAAGCGCTAG ACGCATGGAA CCAAGGCAGA 000160 000161 TTCAGCCTGG CAGCTGGCAA GTCATGGAGC ACTGCCTGTC CATCTGCGAG CTAACAACAG TCGCGCTGGA AGTCAACAAG 000240 000241 GGAAATGGAA AGGGAGAGAC CCAGCCTCCA CAGGGGCTCA CGCCCTGGGA CCTGTGCCAG TGTGAACAAG GTTTTCCGGC 000320 000321 CCCAGGAAGC AGGCCTAAGT ACTCTCATTT CATCACTGAG GAGCCTGAGA CGTTCAGTCA TTGATTGGAC AGCCCTCACC 000400 000401 ATTCAAGCCC TCCTTGGTTT ACAGCAGCAG AAAGAGAGGC TCTGAAGGTT CTAGCCAGAG GAAGCTGCAG CCAGGCCTGG 000480 000481 CAGTCTCCCC TGCTCCCTTC CACCAGCTTG GTTCCTGTTT CTGCTGGTCC TGGGAGCCCC CAGCAGATGG ACTGCCCTTA 000560 000561 TCAGCCGGCT CCAGGCCAGA GGAGGAATCC CCCGGTCACG TGTGGCTCTC TGGAGGGAGA GAGACCTCAT AAATACATAC 000640 000641 AGCCCACGCA GAGGAAGGGG GGAGGGTCAA GGGGAAAGAA ACCTTGACAT TCTGGCGACT GGGCCAGGAT TAAAGTCCAC 000720 000721 CAGGCATAGT CCTTATTGGC TATTTCTATG AGGAATCTCA AATCCACATG GCTTCCCTGG ATGACAACGC TGACTTTGAC 000800 000801 TAGCCCTGGG ATCTGGGGCA TTCCCAGTGT GCTGCTGGCT TGATCCAGGC CTAATCCTTT GCCCAGGACT GACCTTTCAC 000880 000881 AGTTTACAGA GCACTTTATC TCCTGGCTCA GTGAAGTCTC ACAGAACCCT CCAGAGAGAA GGGAGTTTAT CATCACCCTC 000960 000961 AATTTACAGA TGAGGAAGCT GAGGCTGCGA TTGTAACTGA GCTCCATGCC CCGGGCGAGC CATCGTTCCT GCCTGGCGAA 001040 001041 GTCCACAATC CAATAAGGAG GGAAGGTTGA AGGGATGAAT CTCAACAGAA TTGTGCACAG TGAAAGAAGC CAATGAAAGA 001120 001121 AGAGTACATA TTGTATAATT CCATTTATAG AAAACTCTAG AAAATGCAAG CTGATCTACA GTGACAGAAA GCAGATCCAT 001200 001201 GGTTGTTTGG GGAAGTGAGG CAGAAGGAAA GGATTCAGAG AAGCACAAGG AACCTTTTAG GGTGGTAGAC ATGCTTACTA 001280 001281 TCTGGTACTG AGAGTTTCTC ATGTCTGCAC GTATCTAATT GTACACTTTA AATACACACA GTTTATTGTA TGTCAATTAT 001360 001361 ATCTCCATAA AGCTATTTAA AAAGAGGAAC GTAAGTGGGG AAAAGAATGA AGGAAGTTGG CTGGCGTATA ATTAAGTAAG 001440 001441 TCTGTGAGCA GTCTTAAAGT GGGGACACAA AGTACCATGG GCACGTAAGA GAAGAAGGTA GAGATTCATT CCCAAACGGA 001520 001521 AGAGATCAGG AAGGAGTTCT TAGAACAGGG TTTCAACAAA GCTCAAGGTA TGGATAAGTA AGGGTCAGGT TAAGAAAGAT 001600 001601 TCAGATGGAA GATACAGATA GAGTTTATTT GGGAAATAGA GAGTGGAGTA TTATACACAC GCACAATTCG CCTTTTTACC 001680 001681 CAAGTTTTGA AGGACTGAAG TTAAAACTAA CAGCAACTAT CCTCTCTTTT CTTCAGAAAT TCAGACACAT GCCCTACTTG 001760 001761 GCAGGCAGCT AGTTTTGCTA ATAAGATTCC TGCCCTTCTC CCTCCCTCTC TGTGCATCTC ATCCCTTCGG TCCCGCTGAG 001840 001841 GCCCCTACCC TCTCGGATTT CCTCTTTGAA CTGAACTGCC AAATACTTGC CAGCTTCCAG GGCCCTGAGT ACCCACATTT 001920 001921 CAGCCTCTTC CAAACCCCAG AGTAAGAAGG AGATTTGGGG AGTTCTGGGT GGGCATGTGA TGGGAGACTA GGTCCAACAT 002000 002001 AAAAAGATAT TTCCCTTTTT CTTCCATACT TTTTGGCTTA GTAATTGACA TGTGACCATT GGAGAATTTT GAATAGTTTA 002080 002081 TTAGAATACA TTGTGATAGA GAAGAAGGAA ATTCAAGAAT TGTTACAATG TTGTACACTG ATTAACTGGC TAATTTGCTG 002160 002161 CAAAACCAAT TCTGATCACT GCTCTTATGG TTTGTAATAC ATTATTTTGG GTTTGGATGA TCCTGTTATT CATAGCTTTA 002240 002241 CATAAAGAAA TATTCCAATG ACATATGAAA CCC |
Predicted Small Protein
Name | NONHSAT003525_smProtein_1604:1771 |
Length | 56 |
Molecular weight | 6458.3395 |
Aromaticity | 0.145454545455 |
Instability index | 46.6565454545 |
Isoelectric point | 8.15802001953 |
Runs | 7 |
Runs residual | 0.0242424242424 |
Runs probability | 0.0447800741919 |
Amino acid sequence | MEDTDRVYLGNREWSIIHTHNSPFYPSFEGLKLKLTATILSFLQKFRHMPYLAGS |
Secondary structure | LLLLLEEELLLLEEEEEELLLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLLLLLL |
PRMN | - |
PiMo | - |