NONHSAT003458
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003458 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1703 nt |
Genomic location |
chr1+:57179323..57181008 |
Exon number |
1 |
Exons |
57179323..57181008 |
Genome context |
|
Sequence |
000001 GGGGTTGCTA CGTTGTGTTG ATTTAAAATT TCAAGGAGGA ACAAAAACAT TCTAGCCAAG GAGAATTGCA TTGTTATTTT 000080
000081 TTTTTCTACT AATTTAAACG TGCATTTTTC ACAGTTACAC ATTTAAGTTT TGCTACCAAA AATGGCCATT TTTCTAGACA 000160 000161 GATAACATTT TCCTAAAGTG GAAGAGAGAT CCACTGTTCT AAAAAAAAAA AAAAAAAAAA AAACACTAAA TTGTGCCTTC 000240 000241 TCCCTTAAAT TATAAGAAGA GTAATAGTAA AAACTTGTTT AAACTATATT TTCTTTTTTT CTAATCCCTC TCAGTTCTCC 000320 000321 TTAGATCTGC CTCCTACAAA TGATCATGTT GTTTGCATCT GCCTGATTGA GTTCCCTTGG TCAAACCTCT CCCTATCACT 000400 000401 ATCAGAAGTT GTTCACTAAA TGTATTTTCC TATTTCTTTC ATGTTGATTG ACTTTATAAG TCACCTTGGT AAACATAACA 000480 000481 TTTGGCTACC TTCTCATGCT TTATAAATGA ATTTGATGAA TGGCAGTTTT TATATTTTAA CCCTTTAAAA AGTTTGTCAA 000560 000561 GGAAACAACT CAGAGCTAAG AACAAAATCT AACTTGGAAT CAGTTTCTTC CTTTGGCTGC TGAAGCAGCA GCAAGTCACG 000640 000641 TAACCTCATT TAGTTTTTTG ATTTACAAAA TGTGGATAAT AACCTACCTC ACAGATGTGT GTGAGCAACT GTTTGAAAGC 000720 000721 CCTTGTTTAA ATACAGGGTT TATATCCCCA CATTCAATGT AAATTCCTTT TTTTAAAAAA AATAAGTATC TTTGATACTG 000800 000801 ATAGGATGAG TATCTTGATT TTTAGGTAAG ATCACAGTTT CACAAATTGT GGTGTTATTA GGTGACATTT AATATTTCTT 000880 000881 GAGACCTCAA GTATTCAAAT ATCAAACTTG TCCTGTGTTG TAACAAATAT TCAGAATCTC TTAAAATGTT GGCTGAAGCT 000960 000961 GCCTTAATGT ACCAAAATAC AGCTCTCAAG ACTGTTCACA AATATCTGTG GTTGTACAAT GTTTTGAACA TTTAATGTAA 001040 001041 AGTTGTTGTA GAACTGTGAA CTCTAAGGAT AGTATCTTTA TTGTTTTAGG AAGAATGGTT GTGTTCTTTG TCATGTATGC 001120 001121 TTAAATATAC AGTGGATTTT GAATGCAACA AATAAAACTG AAAACAGCCA TTTGGTTGTG TCATGACAAT CATAATATAG 001200 001201 GATATAATAT TTACTTTTTT TCAAAAACAT CCTGCATTCA TTCATTCTTA GCATACCTTT GAAAAAGAAA AAAAAATCCA 001280 001281 TAGGTTGATA CATTGACCCA TTGAAGTACT TCATTACGTA TTTATTGAAA ATTTTTTTTA ATTGTTGAAA TTGGGACCAC 001360 001361 TTTTTATAAT TGGTTTCAAG AAAAAAAATG AACAGACTTC CAGTGCTTTT CTGTTCGAAT AAACTCCGAT TCAAATTTCA 001440 001441 GTTTTGTTTG TTATATACTT TTTGTGAGTG TTAAATGATA TGGGAAGGAT TTGTCTTTCA TTAACCATAT GGAAAAGATG 001520 001521 TCTTCCTGAA TTACATAGCA TTTCATGGTT ACAGATTCTT CCTAATTAAT GTTTGCACCA TATGAAACTC ATAGGTAACA 001600 001601 AACACAAAGG AGAAAAGCAG CCTGTCTGAT TGCTTATAAG CTTTTTTCAC AAAATCAAAT TAAAAGTCTC TGATTCATTT 001680 001681 GAAAGCTAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT003458_smProtein_1142:1261 |
Length | 40 |
Molecular weight | 4663.4016 |
Aromaticity | 0.179487179487 |
Instability index | 55.6923076923 |
Isoelectric point | 8.74066162109 |
Runs | 7 |
Runs residual | 0.0107466063348 |
Runs probability | 0.0315189138719 |
Amino acid sequence | MQQIKLKTAIWLCHDNHNIGYNIYFFSKTSCIHSFLAYL |
Secondary structure | LLHHHHHHHHHHHHLLLLLLEEEEEELLHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToo |