NONHSAT003218

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT003218

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

3864 nt

Genomic location

chr1-:52322198..52326061

Exon number

1

Exons

52322198..52326061

Genome context

Sequence
000001 TAAACTGTCT CCAGATAAGA AAGTTCTAGA GCAACTATCC TATATTTTTG AAGAAAAAAC AATTCTATCT GGGGAAGTTT 000080
000081 TATTCTTCAG AAAGAAAAAC TTACGGAATG GGAAAATCAA CCCTATCTAA ATCAACCCTG ACTAGTCAAC CCAAGTCAAC 000160
000161 TCTGAGTATC TCTGAGGTGA AAGATGAAGC ATGCTGATGG GTGTCAAATC CAATCTTGTA TGAATAAAAT AAGCATCGGG 000240
000241 GAAGCATAGA TGTCATCTTC TAAGGCAAAC ATTCTGAGGA TCTGGCAGCA TAAATCCATC AGTTAATTTA TAATATAATT 000320
000321 GGACACCACT ATGGCCAAAG TAAAAGACAC GGCCAAATCT GGATCACCTT ACAATTTTCA AGATGCTTTC AAGATCCCCC 000400
000401 TTGTCCTGTT ATGGCTGAGG GAAGCAGTGA TGGGAGTAGG CACCATAGTC TGTAACCCCT CCCCTTCTGT CTCGGTACAG 000480
000481 ACAAAGCAGA TAAGCTGGGG CTCTGGTAAT CTTACACAGT TTACTTCATG CCAATTTTTA TGCTCCATGA GATCCAGGTA 000560
000561 AACTGAGAAT GCTGTGCATC TCCTACATCT AACTACATCA TTTCTAAATA CTTAGAAATA TTTTAAGTTT TAATACTTAG 000640
000641 AAGTATTTTA AGTTACCGTA AAGACTTTGA AACTGTGACA CAGGTACCCT CCCCTCTGAT GTTTTTCCTA GTCATCCTGG 000720
000721 GTCTCAGGTA GCCACATGGC ACCCAAGATG GGTATGAAGG GCAGGTCCTG TCTGAGTCCT GAATTTACGC ACAGCTGTAG 000800
000801 ACCTCATGAC AGAAGACAGA AATGGGAAGA CATTGCCTGG AGGACGGAAC CCTCCCAAAA TAGCCAGGAG GCAAAGCTAG 000880
000881 GGCAGGGGAA AAGGGGATAT ATTGGGCTTG ATTCTGCCTT GCAGCTGGTG GCCTAGGCAT TGAGAATGTG TCCTCATGCC 000960
000961 TCACTGTGGG CATACATCCA GACCTCTGAC TCCAGAGGCT CAAAACCAAA AACAAGCAAG CAAGTATCAA ATTATATTTA 001040
001041 ACTGATAATT TTGAAGCCAT TTCTATTTTA GTAACAATTT ACAACTACCT TTATTTACTA AATATTACAT ACAAGTAACA 001120
001121 CATATAGACA CAGACACAAA GACAGAAGCA GATATTATAG CTTACATAAA GGATTGTCAT TTGCTGGCTT TTGAATAGTT 001200
001201 TTTCTTTTCC CCATTCAGAC TATCATTCTT CCATTACCTG TTTCATTGCC CTAAGGAGTT GTTAGCTAGG CAACCTTAAA 001280
001281 TTTGCATTTC TAATGGGACA ACTCTTAGGT GAAATAAGGT AGAAAATTTA TATCTCAAAA GCACAACCTA AGACTTTAGG 001360
001361 CGTACATATT GTACCCTCAT TTGCTCAAAC CAAGGAAAAA ATGATGTGAG TAAAAAATTT CAGTTAAGAT GTCCAGAAAA 001440
001441 GCACCTTAAA CAAAGGTTTG ACTTGTTACA TAAATTTAAA ACTATGGTAA AAGTTTCTAA TATACACAGG CAGACACCCT 001520
001521 TACAAATGGA GATTTCCTTT ATAGATGTAA ATTTCTTTTA CAGAAGAGTT TCAGGATAGC CAGTTAAATG CCAGGAAGGT 001600
001601 ATATTTTAGT TGGGTAGGTG GTTTATTTGA CTTAGCTACT GTTTCTTGGC TAAAATTACT GAGTTCAGGG TAGATGGAGC 001680
001681 CCATTGAGGA ATAGGGCAAA GAAAACAGTA CTCTGTGCTT GGACTCAGAC TGGATAGATC TAAAAAAGAA GCAAGTCTGC 001760
001761 TTTACCCACT GGTTTACATT TTATCAACAT TTTATCCAGG ATATCGTTAT TTTCACTCTT GAGGCAGGAT AGTATTTATG 001840
001841 CCAAAAGTTT AGCAGATTTA ATTATTCTTG TGAATTATTC ACCTGAGCTT TTTATTTGCC TTTTTTTTTT TTTTTTTTAA 001920
001921 AGACAGGGTT TCCCTCTGTG TAATCACAAA GGCACAGTCA CAGCTGATTT GCAGCCTTTA CCTCCTGGGC TCAAGTGAAT 002000
002001 TTCCCACCTC AGCCTCCTGA GTAGCTGGAA CTACAGGTGT ACACCACCAC ATCCAGCTGA TTTTTAATTT TTTGTAGAGA 002080
002081 GGAGATCTCA CTATGTTGCA TAGGCTTGTC TTGAACTGCT GTGCTCAAGC GATCTTCCTG CTTTGATCTC CCAACGTGTT 002160
002161 GGGATTACAG GCATGAGCCA CCACACCTGG CCCTATTTGC CTTTTATGAA GTCTTTTAAT AAAGCAATAA AAATATTGAA 002240
002241 ATGTTTTTAG AAGCTTCTGC ACATCAATAG GCATCCTTGA AGACTAATTG AGGACCCCTC ATTTTTAAGT GCTGTGTTGT 002320
002321 TCATTAGGAA CGGTCCATTG TAATTTTAAG TTACAAAGAT TTTGCCATTT CTGTAAGTAG TTATTTCTTC TGAGGCCTAA 002400
002401 TATTTATACA TTCTACCTTA TAGCTAGAAG GTAGAATACG GTGTTCTTCA GATACTAAGG ATCCAATATT TCCCTAGAAT 002480
002481 CCTGGATTTG GTCCTCAGAT CCCCTTCATC AATTTAGTTA ATGATTTTTC CCTACCTAAG GGTACAAGAA AAAGAATGTA 002560
002561 GAACACAAAA ATCTCTGCAA ATTTCTGAAG TCTGCACCCA CTGTAATATT ACCATTTCTG CTAGTTTCTG CCTGATCCTG 002640
002641 GACATCTGCA GCCTCTTAAC TGAATCCAAG TCAGTTAATT ATCAGATCCA ATCCAATCAT GGATCCAGTC CAGTTTCTGT 002720
002721 TGTGACTTCC AAACCCAGTT CGGATCAGAA GTTTGCTCAA ACTCGGTTCC AAACAGAAAT CTGTCGAGCT TCAGAATCTC 002800
002801 AGCGAGAACT TACCACGATA TCAGTTGCTT CCAGAAAGCA ATGGACATCG TGAGTCTGAG GGGTACCTTG CTTGGTCACT 002880
002881 CCATGCTCCT GGGCATGACA TCTGTTGAAA ACCTTAGACA TATTAAATTT AACAGAGTTT AACTGAGCAA AGAATGATTC 002960
002961 ACAAATTGGG TAGCCCAGGA ACCAGAATAG GTTCAGAGAG GCTCTGGTGC AGTCCCATGA TTGAAGATTT ATGGACACAA 003040
003041 AAAGGAAAGT GATGTACAGA AAACAGAGAT GAGGTACAGA AACAGCCAGA TTTGTTACAG TTCGGGCATT TGGAGTATTT 003120
003121 GAACATAGTT TGAACAGTTG GCTGCCTTTG ATTGACTGAA ACTCGGTAAT TAGCACAAAA GTAGGTTACG ATCTGTTTAT 003200
003201 ACATCTAGTT AAGTTTCAGT TCACTGTGTA CAGAGAAACC TTTAGGCCAA ACTTAAAATA TGTAAGGAGG TGGCTTTAGG 003280
003281 TTAGACTTAA TTTAACAGAT GTTATATATA TTGGTTTTCA TCCACTGTTC CTGTCTTGTA ACTCCCATAG CCCTTGTTAA 003360
003361 AGTCTTTTTG TTACAATGTT GGGTGTGTCA GGTCTCATGT GTCTAGACTT AATTTAACAA ATGTTACATA TATTGGTTTT 003440
003441 CATCCATTGT TCCTGGCTTG TAACTCCCAT AGCCCTTGTT AAAGTCTTTT TGTTACAATG TTGGGTGTGT CAGGTCTCAT 003520
003521 GGGCAGGCCT CAGGAAACAG AATTTCTCAG GCTTTCTCCT ATCCATCTCT CATCTGCCCC AAGACAAGAC CCTATAATCT 003600
003601 TCCCTGCCTT TCTGATTGGG AGTTATAAGA CCCTCCTCAG AGGGCGTCCC ACCCTATCCT TGGAGGAAGG AATGCTGATA 003680
003681 TTTTGAAATT TCCATAAAAA CCCAGGAGGA CTAGGTTCCA GAAGCTTCAG GATGGCTCAA CACGTGGAGG TTCTTGGAGG 003760
003761 GTGGCCTGCA CAGGAAGGGC ATAGAAGCCC TGTGCCCCTT CCCCCATACC TCACTCTGTG CATCTCTTTA TCTGTAATAT 003840
003841 CCTTTACAAT AAACCAGTAA ATGT
[back to top]

Predicted Small Protein

Name NONHSAT003218_smProtein_3497:3685
Length 63
Molecular weight 6900.0965
Aromaticity 0.0806451612903
Instability index 61.9725806452
Isoelectric point 8.36285400391
Runs 11
Runs residual 0.0237788018433
Runs probability 0.0173194584959
Amino acid sequence MLGVSGLMGRPQETEFLRLSPIHLSSAPRQDPIIFPAFLIGSYKTLLRGRPTLSLEEGML
IF
Secondary structure LLLLLLLLLLLLLLLEELLLLLLLLLLLLLLLEEELHHHHLHHHHHHLLLLLLLLLLLLE
EL
PRMN -
PiMo -