NONHSAT002925
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002925 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1709 nt |
Genomic location |
chr1+:45769582..45771291 |
Exon number |
1 |
Exons |
45769582..45771291 |
Genome context |
|
Sequence |
000001 GAAGGGCTGA GGCTCACGGT TTCGGAGTAA GGGGAGCGGC CCGGCGAGCC GCCGCGCCTG GGTTAAGAGC TGCAGGAGGA 000080
000081 ACGTGGCTTC ACGAGTTCGG CTCCTCGGCC ATCCACAGCC CGGGCCTCCG CCTCTGCTGA CCTGGCGGCT GTAGAAGGCA 000160 000161 GAAGAGGCCT GAAACCTGCA GCAGGAGCAC CACCCTGCCC CGCGGCCCCG CGCGCCCTCC AGTGGCGTCA TCCCATCCGC 000240 000241 TTTGATCTCG ACTGGCGCGC CTACCCTCGG CAGCGGCACC CCTTGGGAGC GCAATCGCGG GCAGACTCCG AGGACCCATC 000320 000321 TTGCGAAAGT TCTGCGAGGT CCTGACTTTA AGGGAACAGG GGTCGTACTT GGGCCATGGC CGGAAGGGAG ATCCAACATC 000400 000401 CATGACGACG TCTACCCCCC AGCCTGCCCC TTCAGAGCCC AGTCTGTGCC TTGCGTCAAA GTCAAGCAAG GGCTCTTGTA 000480 000481 GGGCACCGAG CCCCAGCCAA AATCACCCTT TTCTTTCAGA TAGCCCCCAC TTACCCCCAG AAACCTTACT CTCTCCCTCG 000560 000561 GGAGCAGGTG GGAAGTGAAA GGCCGGGGGG GCTGTTTCTG CTCTGCTTGT CTGTACCTGT GGCCCTTGAG TGGAAAACCC 000640 000641 CGCCGCTGGA CCAAAGACCT GGAGGCTCCA GGATTGCCCA CTTGGGACCC TGACTATGAA GGGTCAAGAT AGCCCATTCT 000720 000721 GCCCCAGCAC TCAGAGCCCT ATTACCAAGG CCCCTACTCC AAGAATCCAC CATCAAAACC GGGGCCCTGC CAGTGCCTTC 000800 000801 CCAGTGTTCA GGCCTAGGGA AGAATAGCCC CATTATGCCT GTTACTCCTG ATCCTTCTGC AGTCTCTCTC TTTGTGACCC 000880 000881 CATGGCCTTT GCTGCTATGT CTGCCCTGGC CCCACAGAGT GCCAGGTCAG AGCCACCCTG GCCTACATAG CAGGGCCCCG 000960 000961 GTTCACAGGC TAAAACCTGG GCCTCCTGCC AGGCTGCAAC TCCCAGCTGC ACACCGCAAC CTGAGACATC TCAGCATATT 001040 001041 CTAGGAACTA GTAATGGGGA CGCTTCCGAC TCGCTGGGGA AGGGAGATGA GGGCCTCTAG CTCTCCATGC CCAGTCTCTC 001120 001121 ATCATCAAAG TCATTTAAGG CCCCAGCGAC CCCAGGGTTC AGCAGCATCC TGTTCATCAT GAGCAGAGGG GTGACTGAAT 001200 001201 AGAATGGGAG GCAGGTGTGG CCTGAGCAGT TCCCAACCTG AATTTTCCTT TGAGCTTGGT GATTTGGGGC GGGGGATTGA 001280 001281 GATATTTTCC TTTCACTTGT GGGAAATCTT GGGGCCCCAC AAATCACTAA GCTGAAGGGA AAAGTCAAGC TGGGAACTAC 001360 001361 TCAGGGCAAA CCTGCCTCCC ATTTTATTCA GTCACTCCTC TGCTCGCTGA GATAGACACA TACCTGATTG CCTCCTTTGG 001440 001441 AGAGGCTTGT CAGAAACAAA ATAATGCAAC CATTTGTCTC TCAGCTACCT GCGACCTGGA AGCCCCCTCC CCACTTCGAG 001520 001521 TTGTCCCCGC CTTTCTGGAC GGAACCAACG TACTTCTTAC ATATATCGAT TGATGTCTCA TGTCTCCTTA AAATGTATGA 001600 001601 AAACAAACTG TGCCCTGACC ACCTTGGGCA CATGTCGCCA GGACTCCCTG AGGCTGTGTC ACGGGCACGC ATCTTCAACC 001680 001681 TTGGCAAAAT AAAGTTTCTG AATTAACTG |
Predicted Small Protein
Name | NONHSAT002925_smProtein_1463:1705 |
Length | 81 |
Molecular weight | 9206.7149 |
Aromaticity | 0.125 |
Instability index | 70.07 |
Isoelectric point | 7.84661865234 |
Runs | 9 |
Runs residual | 0.0263157894737 |
Runs probability | 0.0425916112191 |
Amino acid sequence | MQPFVSQLPATWKPPPHFELSPPFWTEPTYFLHISIDVSCLLKMYENKLCPDHLGHMSPG LPEAVSRARIFNLGKIKFLN |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEELHHHHHHHHHHLLLLLLLLLLLLL LHHHHHHHHHHHLLLEEELL |
PRMN | - |
PiMo | - |