NONHSAT002716

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT002716

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

2242 nt

Genomic location

chr1+:42007740..42009981

Exon number

1

Exons

42007740..42009981

Genome context

Sequence
000001 ACTCATTACA GTCAGATTCA TTCTTCAATA GTGGAAGGAA AACCAAGTGC CCCAGATTTC AATAGGTTCA GAAGCCTGGA 000080
000081 GATGTCTCCC TCACCCACCT CAAAAGCGAA GCTAATGGTT TCGTGCTAAG AGGCTGGCTC AACTGTCTAG CCCTGGCAAT 000160
000161 ATTGGGACCA GTTGATGGAG TAAGAAGTCA CGATGGAGTC TCTCTACCAT CTCCTCCTTC TCTCCAGCCA TGGCCAGGTT 000240
000241 TGCGGAGGAA TCCATAACAT GCTGATGGGG ATACAGAAGC CCTTGGAAGC TCTCCAAGAT CACAGCCAAG GGGACCATGA 000320
000321 ACTTCCCAGG ACCCCCCCGC TGGAGGATGA TGGAAATGAC CACACTCATG CCAGGATGGG GTCCGAGGCG CAGGAAGCTC 000400
000401 CTCACAGAGA AGATTCCTTT GTGCCCATCT CTCCTGATGA GAGTCTTGTC CCCAGGAAGG TCAATATTCC gatgaagtag 000480
000481 aagaggagca gcatgaggaa gaggaagatg atgaaggtga cgaggatgta gaggaaagag aggatgcaga cagaaACATC 000560
000561 GTCACAGAGC CACAGTATCC TGCAGAGGCA GAGGCAGTGC AAGGGGATGA TGGCAGGGAA CAAATTCCAG GGATGAAGAC 000640
000641 AGAGCCGCCA ACATGGAATG TGAAGCATTT CAGCTTCCAA ACTTTGACAC TGAATACAGT GCTGAAGAGC AGGCTTCAGT 000720
000721 TCCTCCTATG ACACATGATC CGTATGACAC GGAGCTTGAA CCACTCTTCC ACTTTTAAAA TGGCTATCAG TGGGATGCAG 000800
000801 GATCATGGTC CAGATTAACA ATACGCAGGG GGCAATAAAA GCCTCAGGAA AGTTAACCTA ACTGTTAGGT TTCTATCGGG 000880
000881 ATAACGGAGG CGCAAAATGG GTGACATGTT TAGAAGAAAC TCCAAGATGA AGAATAAAGG GGTTTGCTTA TCTGCACTTG 000960
000961 ACAAACATGA AGCAGGAATC CCTTGGTGAG ATGGTAGGCT GGACCATGCG CACTATAGAT CTGTAAGTAG CCCCTCACCT 001040
001041 ACCCGCTGCC TTAAATGTCT GACCACTCAA AGTGGGGGCC AAATTAGTGT CCTCACCAGC AGAAAGTGGG GTCGAGGAGT 001120
001121 CAAGGCACAG CCACGAGCTG GCGTGATTCA GCTCCTGCTC CTGCCTGCTG ATCCTGTCTC ATCTTCCCTT CAGTTCAAAG 001200
001201 TACTTAATGG TTTGGGCAGT TCTTAGCATG ACAGATGGAC AGATGGTTTT CACGGAGGTA GGCAGGGTGA AAAATGTGGT 001280
001281 TCTGAAAAGC TTCCAGAGCT TGTATGTAAA GATCAGACTG TGAGAGTTGT CACTGCTGGC CCGGCTATCC CTCAGGAAAG 001360
001361 CCATTTCTAT GAAAACTTGT CAGAGATTAA AGGAGGTGGT AACCAGTTAG CAGAGAACAC TTTGTCTCTT CCCAGTCACA 001440
001441 TGTGGGtaac tggctgtgta acctaggccc aggcccttgc cctctctggt ctccagccac ctcaCTGACT CTACAAGGCC 001520
001521 TCATAGCTCC AGGGGGTGAG CATAGACCCC TCAACACCTG GGGGCTCCTT ATTTAGGTCC TTCCTGGTGT ATCCATATTG 001600
001601 AGACTGGGGC TAGACCCTCT TGAGAGCTGC ACAGTGAACC TGACCACAAC CCAGATGCTG GAAACGAGAA AGCAAGATCA 001680
001681 GAATAGGGAA ATGAGGTGGA GGCTGCTATA GACGTGGCTC TTTGGTCTCC TCCAATGTAA GCGCAGGGGA AGTGGAGATG 001760
001761 CTTCTTCGCC GTGTTGAAAG TTTTTCGTTG ACTGGGATCA GCACCTCCTA CAATGGTCCA ATCTCCTGCT CAGTCTTTGT 001840
001841 CATGCTGTTC TCCTCAGGCC TTCATATCTT GGAGCTGGTG GCCTTGCTGT TGTTCATTCC AGTCATAAGG GCTCCTCCTG 001920
001921 GTGCTGCAAG CCATAAAGGA TTTTACAGGT CCTGACACAG CCACCAAAGG GTCGTCTTTA TCTTCTGTTG GAGTAGGAAG 002000
002001 CAACACCTTT ATTGATCAGA GCACCATGCC ACCTTTATGA TCAAGATGAA GAGGAACGTC TCTCCAGCCC CAAGGTATGC 002080
002081 CTGTACCTCG TGGCTAACTG GACCCCACAC TGCTCAGCCA TTTTCTGCAT GGGATAGACA GCAGCAGCCG CAAGAACACA 002160
002161 AACGAACATC TGTGATCCTC TAGCACTACA GTGCATTCTC CTCACTCCAG GACCTCCTCa tccttactag aaaccagtga 002240
002241 gg
[back to top]

Predicted Small Protein

Name NONHSAT002716_smProtein_1757:1954
Length 66
Molecular weight 7069.3186
Aromaticity 0.107692307692
Instability index 56.0124615385
Isoelectric point 9.77606201172
Runs 9
Runs residual 0.0118269230769
Runs probability 0.0376258611553
Amino acid sequence MLLRRVESFSLTGISTSYNGPISCSVFVMLFSSGLHILELVALLLFIPVIRAPPGAASHK
GFYRS
Secondary structure LLEEEEEEEEEEEEELLLLLLEEEEEEEEEELLLHHHHHHHHHHHLLLEEELLLLLLLLL
LLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL
LLLLL
PiMo oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiii
iiiii