NONHSAT002716
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002716 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2242 nt |
Genomic location |
chr1+:42007740..42009981 |
Exon number |
1 |
Exons |
42007740..42009981 |
Genome context |
|
Sequence |
000001 ACTCATTACA GTCAGATTCA TTCTTCAATA GTGGAAGGAA AACCAAGTGC CCCAGATTTC AATAGGTTCA GAAGCCTGGA 000080
000081 GATGTCTCCC TCACCCACCT CAAAAGCGAA GCTAATGGTT TCGTGCTAAG AGGCTGGCTC AACTGTCTAG CCCTGGCAAT 000160 000161 ATTGGGACCA GTTGATGGAG TAAGAAGTCA CGATGGAGTC TCTCTACCAT CTCCTCCTTC TCTCCAGCCA TGGCCAGGTT 000240 000241 TGCGGAGGAA TCCATAACAT GCTGATGGGG ATACAGAAGC CCTTGGAAGC TCTCCAAGAT CACAGCCAAG GGGACCATGA 000320 000321 ACTTCCCAGG ACCCCCCCGC TGGAGGATGA TGGAAATGAC CACACTCATG CCAGGATGGG GTCCGAGGCG CAGGAAGCTC 000400 000401 CTCACAGAGA AGATTCCTTT GTGCCCATCT CTCCTGATGA GAGTCTTGTC CCCAGGAAGG TCAATATTCC gatgaagtag 000480 000481 aagaggagca gcatgaggaa gaggaagatg atgaaggtga cgaggatgta gaggaaagag aggatgcaga cagaaACATC 000560 000561 GTCACAGAGC CACAGTATCC TGCAGAGGCA GAGGCAGTGC AAGGGGATGA TGGCAGGGAA CAAATTCCAG GGATGAAGAC 000640 000641 AGAGCCGCCA ACATGGAATG TGAAGCATTT CAGCTTCCAA ACTTTGACAC TGAATACAGT GCTGAAGAGC AGGCTTCAGT 000720 000721 TCCTCCTATG ACACATGATC CGTATGACAC GGAGCTTGAA CCACTCTTCC ACTTTTAAAA TGGCTATCAG TGGGATGCAG 000800 000801 GATCATGGTC CAGATTAACA ATACGCAGGG GGCAATAAAA GCCTCAGGAA AGTTAACCTA ACTGTTAGGT TTCTATCGGG 000880 000881 ATAACGGAGG CGCAAAATGG GTGACATGTT TAGAAGAAAC TCCAAGATGA AGAATAAAGG GGTTTGCTTA TCTGCACTTG 000960 000961 ACAAACATGA AGCAGGAATC CCTTGGTGAG ATGGTAGGCT GGACCATGCG CACTATAGAT CTGTAAGTAG CCCCTCACCT 001040 001041 ACCCGCTGCC TTAAATGTCT GACCACTCAA AGTGGGGGCC AAATTAGTGT CCTCACCAGC AGAAAGTGGG GTCGAGGAGT 001120 001121 CAAGGCACAG CCACGAGCTG GCGTGATTCA GCTCCTGCTC CTGCCTGCTG ATCCTGTCTC ATCTTCCCTT CAGTTCAAAG 001200 001201 TACTTAATGG TTTGGGCAGT TCTTAGCATG ACAGATGGAC AGATGGTTTT CACGGAGGTA GGCAGGGTGA AAAATGTGGT 001280 001281 TCTGAAAAGC TTCCAGAGCT TGTATGTAAA GATCAGACTG TGAGAGTTGT CACTGCTGGC CCGGCTATCC CTCAGGAAAG 001360 001361 CCATTTCTAT GAAAACTTGT CAGAGATTAA AGGAGGTGGT AACCAGTTAG CAGAGAACAC TTTGTCTCTT CCCAGTCACA 001440 001441 TGTGGGtaac tggctgtgta acctaggccc aggcccttgc cctctctggt ctccagccac ctcaCTGACT CTACAAGGCC 001520 001521 TCATAGCTCC AGGGGGTGAG CATAGACCCC TCAACACCTG GGGGCTCCTT ATTTAGGTCC TTCCTGGTGT ATCCATATTG 001600 001601 AGACTGGGGC TAGACCCTCT TGAGAGCTGC ACAGTGAACC TGACCACAAC CCAGATGCTG GAAACGAGAA AGCAAGATCA 001680 001681 GAATAGGGAA ATGAGGTGGA GGCTGCTATA GACGTGGCTC TTTGGTCTCC TCCAATGTAA GCGCAGGGGA AGTGGAGATG 001760 001761 CTTCTTCGCC GTGTTGAAAG TTTTTCGTTG ACTGGGATCA GCACCTCCTA CAATGGTCCA ATCTCCTGCT CAGTCTTTGT 001840 001841 CATGCTGTTC TCCTCAGGCC TTCATATCTT GGAGCTGGTG GCCTTGCTGT TGTTCATTCC AGTCATAAGG GCTCCTCCTG 001920 001921 GTGCTGCAAG CCATAAAGGA TTTTACAGGT CCTGACACAG CCACCAAAGG GTCGTCTTTA TCTTCTGTTG GAGTAGGAAG 002000 002001 CAACACCTTT ATTGATCAGA GCACCATGCC ACCTTTATGA TCAAGATGAA GAGGAACGTC TCTCCAGCCC CAAGGTATGC 002080 002081 CTGTACCTCG TGGCTAACTG GACCCCACAC TGCTCAGCCA TTTTCTGCAT GGGATAGACA GCAGCAGCCG CAAGAACACA 002160 002161 AACGAACATC TGTGATCCTC TAGCACTACA GTGCATTCTC CTCACTCCAG GACCTCCTCa tccttactag aaaccagtga 002240 002241 gg |
Predicted Small Protein
Name | NONHSAT002716_smProtein_1757:1954 |
Length | 66 |
Molecular weight | 7069.3186 |
Aromaticity | 0.107692307692 |
Instability index | 56.0124615385 |
Isoelectric point | 9.77606201172 |
Runs | 9 |
Runs residual | 0.0118269230769 |
Runs probability | 0.0376258611553 |
Amino acid sequence | MLLRRVESFSLTGISTSYNGPISCSVFVMLFSSGLHILELVALLLFIPVIRAPPGAASHK GFYRS |
Secondary structure | LLEEEEEEEEEEEEELLLLLLEEEEEEEEEELLLHHHHHHHHHHHLLLEEELLLLLLLLL LLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL LLLLL |
PiMo | oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiii iiiii |