NONHSAT002566

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT002566

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

550 nt

Genomic location

chr1-:39988116..39995214

Exon number

2

Exons

39988116..39988177,39994727..39995214

Genome context

Sequence
000001 AGACTTTTCA GTAAGGAAAG GAACCTGGGG TAGAAAGCTC CCCCTTCAGC TGCCCATGAG GGCACAGGTG GGCCCCACAC 000080
000081 TCACTACGGG GCCAGGGCAG GGCCGCACAC CTGCCACTTC CTCAGCAGAG ACCCTAGCGC GTGGGTCACT GCTGGCCCAG 000160
000161 ACTCCTTCCA CGAGCAGGCG AGTGTGCAGG GCCACACCTC ATCCAAGAGA TGATCACGTT TAGGTTTTTG ATGAAAAGCA 000240
000241 TAGCTCTCAG GTAAATACAG CAGCACCTCT AAGCATATTC TGGGAGGAGT GGGTTTTATG AGGAAGGCAC ACAAGGAACG 000320
000321 CCCAAATTTG CAAGTCCCTT TAAAATGAGC CTGCTCagaa ttgctgttta ttccacaggt ctgcgcaggc atggcactaa 000400
000401 gtgtcccatg gcacatttgg ccctcatgga ggcctcaaaa gggcaggacc agcaccctct tctacggagg aaggaacggg 000480
000481 cacagcagAA ACAAGGAGAG TCAGCAATTA CCAGCCAGCC AAGGTCCTGG AAGCTGACGT AGAGCTCGTG
[back to top]

Predicted Small Protein

Name NONHSAT002566_smProtein_344:541
Length 66
Molecular weight 7384.5178
Aromaticity 0.0307692307692
Instability index 62.9476923077
Isoelectric point 10.967590332
Runs 7
Runs residual 0.0425961538462
Runs probability 0.0495369318899
Amino acid sequence MSLLRIAVYSTGLRRHGTKCPMAHLALMEASKGQDQHPLLRRKERAQQKQGESAITSQPR
SWKLT
Secondary structure LLEEEEEELLLLLLLLLLLLHHHHHHHHHHHLLLLLLHHHHHHHHHHHHLLLLLLLLLLL
LLLLL
PRMN -
PiMo -