NONHSAT002542

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT002542

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1533 nt

Genomic location

chr1+:39534023..39535555

Exon number

1

Exons

39534023..39535555

Genome context

Sequence
000001 gattgctcca ctgcactcca gtctggatga cagagagaga ctccatgtca aaataaataa ataaataaat aaataaataa 000080
000081 ataaataaat aaataaaATA GTAGCTCTgg ttgagggcag tggctaatgc ctgtaatccc agcactttga gaggccaaga 000160
000161 caggagcatc gcttgagccc aggagttcaa gaccagtttg ggcaacatag ggagacccca tctctacaaa aataaaaaaa 000240
000241 ttagccaagt gtagtggcac atgtccatgg tcccaactcc ttgggaggtg ggaggatcac ttgggcctgg gaggtcgagg 000320
000321 ctgtggtgtg tcatgattgc atcactgtat tccagcctgg gcaacagagt gagaccctgt ctcaaaaaat aaaataaaaT 000400
000401 AGTAACTCCC AGTGTCATGT TTTTCTATTT TATTCTTCTT CCTAACACTT ATTAATAACT GCATTagaca gaaaacaaac 000480
000481 aggtaaacaa atgagctaca tgatgacaaa gtgatcaaag ttatgaagaa aataaagcaa ggcttaaagg agggggctac 000560
000561 tttggatggg aggtcaaaaa gggcctcttt gagaaggtga cttctaagat gaattttagg tgatgaaaat ggcaccaatc 000640
000641 atgcaatgat tttagggaat tccaagcagc cagaacagct ttgcagagtc ccaaagtggg acggaaattc acttattaga 000720
000721 ggaacagaaa gaaggtttga tttgctagaa tccagtgagc aagggggtcc tggagcacga gtcagatcat ttgaacatta 000800
000801 tggtccattg aaaagagtgt atattttagt gtaagtgcat attggaaCTG TGTAGGTGAC ATGGTTTATG Gttttttttt 000880
000881 tttttttttt ttgagatgga gtttccctct tgttgcccag gctggagtgc aatggcttga tctcggctca ccgcaacctc 000960
000961 tgcctcctgg gttcaagtga ttctcctgcc tctgccttcc aagtagctgg gattatgggc atgcatcacc actcccagct 001040
001041 aattttgtat ttttagtaga ggtggggttt cttcatgttg gtcaggctgg ttgcgaactc ctggccttag gtgatccgcc 001120
001121 tgcctcagcc tcccaaagtg ctgggattac aggcatgagc cacggcgccc ggccCTacct taggtaatcc gcccgcctca 001200
001201 gtctcccaaa atgctgggat tacaagtgtg agccaccgca cccagccAct gatctatgtt ttaaagaatt cactcttggc 001280
001281 tgcagtatgg attgaaatgg gggagggaga aagaatggaa ataggccatt cagaaggctg gtgcagttgt ccaggtgatt 001360
001361 gatggcagtg cttggaccaa gatggtgaca gcaagataga agaaatgggt gaattcagga tacattatgg aggcagtttg 001440
001441 tcagaactgg ccgataggga taagaggaat gagagaaaga aaaatcaaga atgacttctg gctgggtgcg gtggctcacg 001520
001521 catgtaatcc cag
[back to top]

Predicted Small Protein

Name NONHSAT002542_smProtein_260:391
Length 44
Molecular weight 4721.6186
Aromaticity 0.0697674418605
Instability index 50.876744186
Isoelectric point 10.3101196289
Runs 6
Runs residual 0.0177684870656
Runs probability 0.0404522169229
Amino acid sequence MSMVPTPWEVGGSLGPGRSRLWCVMIASLYSSLGNRVRPCLKK
Secondary structure LLLLLLLLLLLLLLLLLLLEEEHHHHHEEHHHLLLLLLLLLLL
PRMN -
PiMo -