NONHSAT002499
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002499 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2825 nt |
Genomic location |
chr1-:38520035..38678123 |
Exon number |
7 |
Exons |
38520035..38520377,38580255..38580365,38584663..38585202,38597608..38598253,38660005..38660575,38676234..38676494,38677770..38678123 |
Genome context |
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Sequence |
000001 CTGCCTCAGG ATATGGTTCA GTCATCACCT CCTTCATCCA GCCTTCTCTA CCTCTTTGTC TTAACATTGA AATGGCCAGC 000080
000081 GTGTTCTTCT ACCTGCCTGC CAGACATGCA GGCCCAAGGT ACCAGGAGGC AGATGCTGAC AGATGCATCT CAGTATGCCC 000160 000161 GGCACCTCCA CCACACAAGG GCTGTGCTGG TTGCTGTGGG AATGCTGCAG GGCACAAAAC GGATAATGCT GGAGGGAGAA 000240 000241 GACAGCAAAC ACAAGGCTCA AGAAACTCCA GTATGTAAGA AGAGGACATG CACAATGGAA GAGGGAAGCC ACCATGCAGA 000320 000321 ATGTCGGGGT GCACTTTTAA ATGGGACAGT CAAGATGAGG AAACTGAGGC TTGGCGTCTC ATTGAGTGAC CTACCCAAAA 000400 000401 GTTACCCAAG GAGAAATGGG CTCGCAGAGA TTTGAATCCT GGTCTCCGGC CTTCCTTTAG ACACTTGGGT GCTCCCAAGT 000480 000481 CTGCATTTGG AGAGGGGAAC AGCATTAAAG TATCAGCTGG AGCTTCTCAG CTTGAAATCC TAGGCCTCTT CCAGAGGCCA 000560 000561 GATGTTCGGA TGGTACCAAG GGGCTCTCCG CTGAGTCCTA GGCTGGGAGC AGAGTAAACA CTTGGAAACT CAGTGTCCAG 000640 000641 ATGCCACGAT TTCTAGTAAG TATGGATTCA AATTAAATGC TGTGGTAAGT AGTATGTTAC CATACTTCTA ATCTTATTAT 000720 000721 TTGTTTAAAC AGAGGGTGCT TGCTAACCTC GTGCTTCTGT TAATGACTTG GGCACTCAAT GAGTTCGTGT CCACCCAGAA 000800 000801 AGCATTTGTT TAGCTGGCAG GCACCCAGGC TGGGCCCGGC TGTGTGCAGG TCCTGGGCTC TCACAGCCAA GTCAACTGCA 000880 000881 ATCCTGATGT CTGAGGAGCT CCTGGTCCAG TCGGGGGAGG GACCCAGAAA CAGGCTGAGT CTGCTTATGG CTGGAATTGG 000960 000961 GTAATGGCAA TGAGAACATG AACTTAACCC TTACTGTGGG CGAGGGGGAG GGCCCATCAG GAAAGTGCCT GGGGGCTGGG 001040 001041 TCCTGAAGAT GAATAGGAAT GTTCTAGAAA GTAAGCAGAA AGGCATACCT GGCAGAGGGT TTTGCAGGCG CAAGGACCTA 001120 001121 GAAGTACAGC AGGGTGAGGT GCATCTGGAG GAGAGTTTGG TGTGGGTTAG GATTTGTGGC TGTCAGATAT ATAGTTTTCC 001200 001201 TTCTCCTGCC ATCTCCTGTT TGAGTCTTTT AGAAACAGAG GAGGCTAAGG AAAGTGAAAA TGATTCCAAA GGAAACAAAT 001280 001281 CCCTGCCCCC ATTTCCTGAT TTGTCCACTG CCATGCCTCT GACCTCCTGC CTCCTCAGTC TCTGGTGTCC AGCAGGAAAG 001360 001361 AATCCAGGGC TCCAAATCTC TCCAGGGCCA TGTGATACCC TGGCCTATGG GAAGATGCCC TGGTCACTTT TCCTAGGCTC 001440 001441 CTCCAGGTAG CCGAGCCTCA GCCACCAGGG CCACAGACTT CTCTGCTGCC TTGAGGGACC TACGGGACTA GCAGGAGCTG 001520 001521 CTCTTCCTCG TACGACTTCT ACCCACCCAG GTAACCAAAA ACCTAGGTGT CCTTCTCAGT GACTCCCTTC CCCCACCCCA 001600 001601 CCATGTCCAG TCTATCCCCA AACACTGATG CTTCTACCTC TTAAGAGCAT CTCCCCAGTT CCACCTCCTG ACCCAGCCCA 001680 001681 GGCCTTATCA CCTTTTGCCT GGGGGTTTTG GCATTACTCA GCTCATCAAC TGCTCAGCCT CCAGTCTCTC CTTCTCCAGT 001760 001761 CCACACCGCA CCAGAGTGAG CCTTCTAGGA TGACCATGCC ACTCTCCTGT GTGAAACCCT TATCAAGGGC TTTGATGTTA 001840 001841 AGTGTTTTTA TTTTTATTTA TATAGTTTCC ATTTTTAATC AATATTTTTA TTTTAAATTG CATCCAAAAT CATCAGTGAA 001920 001921 GAGAGAGAAC TGCAAGGAGA AGGGAGAGTG GGGGAGGCAT AATCATTGCA AGATGTGAGC TGGAGTACCT TGTTTCTTAC 002000 002001 CAGAATCATC CTTCAGCACT GCAACGGGCC AGGCCCTGGG CTAGGGAAAT GTGGGGCAGG CAGGAATGAA TCTGCCCGAG 002080 002081 TCCCTGCCCA GAAGGACCTC TCAGCAGGTG AGAAGAGAGG AGACATTTCC AGGCAGCACA TGAGAGGAGC CATATCCAGG 002160 002161 GCGCAGCTGT CTGGGAATGA TCTGGGTGAC TAAGCAAAGA GGACCAGCCA GGGAAGGCAG GACTCAGGAC ACAGACAGGA 002240 002241 GGAAGCGTCG CCCTAAATCA AATCCCAGGA AAGGTCCCAC GATGACAGAA GGGATCGTCG TGGATCTGAG GCAGAAGTGC 002320 002321 TCTGAAGCCC AAGCTGGCAG GTCTTCCAGC AGGCAGTGCG GCTGCCTTTT ATTGTAAATT AAATATAGCT GCACTTCAGC 002400 002401 TTTCCAAAGA GCTGGGAAGG AGAGAAGGAG AAAGAAAAAG AGAGAGAGGA AGAGAAGAAA AGCTGCCGCC CTCAGGAAAG 002480 002481 TCGGTAAACT GAGGCATTCC ACCTAAGATC CCGTTCCTCG GTAGAAAGGA GAACAGGGAC ATGAGCCCTG CACACACTCT 002560 002561 GTGTTCAGCC ACAAACCAAA GTTGAGGCTC AGGGGTGATT TTATCTGCAA TGACAAGTCC ATCCCCAGGC TCAGACAGGT 002640 002641 ATTGTTCCAG GCCCAGCAGA CGTCCCCAAG TTAAACACAC ATCCAGGGCT CAAACAGACA TTGCCCCCAG GCCAGGAAGA 002720 002721 TGATGTACCA GGCCCAGACA GATGTTGTGC CAGGTTCAAA CACATGTCCT GAGCTCAGAC AGAAGCTGTC CCAGGGCCAG 002800 002801 ATAATGTGCT GGGCTCAGCC AGGTG |
Predicted Small Protein
Name | NONHSAT002499_smProtein_71:277 |
Length | 69 |
Molecular weight | 7162.9454 |
Aromaticity | 0.0588235294118 |
Instability index | 62.8707352941 |
Isoelectric point | 9.03863525391 |
Runs | 11 |
Runs residual | 0.0212639109698 |
Runs probability | 0.0334184451831 |
Amino acid sequence | MASVFFYLPARHAGPRYQEADADRCISVCPAPPPHKGCAGCCGNAAGHKTDNAGGRRQQT QGSRNSSM |
Secondary structure | LEEEEEEELLLLLLLLLLHHHLLLLEEELLLLLLLLLLLLLLLLLLLLEELLLLLLEELL LLLLLLLL |
PRMN | - |
PiMo | - |