NONHSAT002346
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT002346 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2588 nt |
Genomic location |
chr1-:35641982..35646083 |
Exon number |
2 |
Exons |
35641982..35642075,35643590..35646083 |
Genome context |
|
Sequence |
000001 GACTTGACTA CAGTCGAATA CATGTTGGGA ATCATTCCCA ATCATAAGAC ATCGTCGTTT CTGTAGGATG ACTGCATATG 000080
000081 TTCAGAGTAG CTTTTTGAAT TTGGTTCCCT TAGCTTTAGG GATGTGATGT TATAGTCCAA AATGTTTACA AGAAAACCTA 000160 000161 AGTCTTCAAA AGCACAACTT TTGTTGCTTA GGACTTTGCA TCAACTGTTG TTCCAGACCT CACTTCAACT TCTTGGTCTC 000240 000241 TGAACTGGTT TTAGCTAGCA TGCATGAGAG ACAGTTTTCA TGTATAATGT TTCTGCTCTG TAACTGGAAA GTGGTTTACT 000320 000321 TTGCATAAAT GCTGATGAAA ACTTCATGAC TATGAGACTT TTCTTCTGTG TATCAAGAAA AAGCTTGCTC GTTGGCAAGC 000400 000401 AATTCACAAG GTGGGGACAG ACTTGTACTT TAACATGTAG TCCATTCAAG CAAACAACTT TGGACTCTAC TGATAGATGA 000480 000481 AAGAGCAAAT GATGACTAGT TTAGCCTCTG CATATCAACA ATATAATGCA GATCAAGTAT AATGCTCAAT ATTAGTGACA 000560 000561 TGAGTATCAC TAAATTACAT AGAACCCTGA TGGGGTTTCC TGTGTCGTAA TCCATTAAAT CGGTGGCCAG TGCTTGCTGC 000640 000641 CGTGGTTTAG TGATTGGGTG TTAGAAATAA AAACTCAGGT CTATTTCTTA CCAGTCAGTA ACAATTTTTA GAGAATGTAC 000720 000721 TTGGTATATA ATATATGGAC TTCAGGAACT TTATTGGGGT GGGGGGTTAA TTTTGCCTTA CCCTGTTCAC TTTCAGATGA 000800 000801 TTAGGCTTTT GCACTTTAGA ATGAGAAACT TGTGACGTTA GTGTGTTCTT ACTAGCTTTA ATTTGTATGT AGCAATGAAT 000880 000881 TGTGAATCTT AGTGCAGTGG GTTTTTTTAA AAAACTCAAA AAGCTGGGAA TTAAGTGGTT TCAGTAATAA TGCTATACCG 000960 000961 AGGTGCTTGC ATTGTATTTC ATAATTTTGT TACAAACCAA AATTATTTTT AATGAGAACA GTCTTGGGTT CAGAGGTGTG 001040 001041 ATGCCAGAAT GTATTTTCGT ACTGTTAGGC CCTTGGAACA GATACCGGTG CTTTCTGAAA GATGAAAGAA ATGCAATGGG 001120 001121 TGCTCTTCAT GCAAGGTTGC AAACCTACCA AGAATGCATA ATAGTCTCAC TTTTCCCCAA TAAAGAGATG CGTGTGACTA 001200 001201 GTTTTGGACT TTTAACCTTA ATGGGGGTTG CATGTCTCCT ATTGTTAATC ATTGTCAGCT GCAGTGACAT GATCCACAGT 001280 001281 CCTGCATTTA CTGCCTTTCA CTTAATGATT TTGGACAGGT TTTAGAGAGC CAGGATGTTG GTCTGGGCCT TTATTTGGTT 001360 001361 TTGGCTTTAG CTGATAATGT TTTAGTGATG TCAGCTAGTG CAGTTCTCAA ATGGCTGCCT ATTAGGGAAA GAATTCAGAG 001440 001441 GATTTGACTG CTCCTAATCA TCTGTCATTG CTGCTAGATA ATGATTGGCA ATTTTTAAGA CTCAACTGGA AATCTCAACA 001520 001521 GTTGCTGGTA AACCATTAAC CATAAAAACG TTGCTTTTGA ACACCAGTGC TGaaaaaaat attttttttt ttttttttGA 001600 001601 GAGTGAAAAG GGCTTGGACT TAAGATAGGA CAATGTGGAG AATGGGGGGA AGAATGCAAA ACGATATAGT ATCCCTTATG 001680 001681 GATGGTACAT GTGCAACAGG GAACTCTTAC TTCATATACC CTTTGCAGTA ATCATTCAGG GAGGAAGAAA AACCTGGAAC 001760 001761 TTGAATGAAG GCTGATCTTT GTTTTGTGCA CTGTGGCCCT GCCAGGCATA TAGTGAAGGT GAATGTCTTC TCCCTCAGAA 001840 001841 AAAAATTGGT TCCTTGCTGT CCCAGTAAGG CATAGCTTTT CCAGCCCTAA CTTTAAAACT CAGTGAGGAC TTAGATGGGA 001920 001921 AAGAATGAGG TAAATACAAA GGATTGCAGG ACAACAACTA CAGCGTTGTG TACTGTGGGA AGGGGAGTTG GGCACTCTTG 002000 002001 GAGGACTCCT GCTGAAGGTG GTCAGCCTGC CTGACAATGG AAGACATACT TGAATGGGGA GCAGGGTATG TGCTTTCATA 002080 002081 TGAAAAAAGA GCTGATGTTA AAACTCATTT GGTGAGGTCA ACGTTGTCAC ATACCTTCAC ATAAGGGATA GTATATTTTG 002160 002161 GGTTGCAGTC AAACTTGTGC TCAGACTGGT GAAACTGAGA GTCAGGCTTT TACATTTTAA AGAAAATACA GTTTTCATTC 002240 002241 TAATTCAGGT GTCTACTTAT TTTATGTAAG AATAATTTTA GATTTCCCCC CCACCATGAA GTTTCTTCCT ATTTTTTTAT 002320 002321 GCTGTAACTT ACCCCCAATC TTTATCTCTG GATTTTTACT CTTTAAATTT TGAAGTTGAC TAGCATTTTC AAACCTTTAT 002400 002401 TTTATACCCT TGTCTTTTAT ATTAACTTTT TCTTATTATT CTTTAGGTAA GAATGATTGA TGTTGGCTGA TATTGGAGTG 002480 002481 CTCATTCACA TGAACAGGAT CAGGTGAGCT GTGTCCAGAA AACCAACGAG AAGGAGTGGA AGGAGGAATG AACGTTTCAT 002560 002561 TCTCGTTAAT AAAGGCATTA TCCTAATT |
Predicted Small Protein
Name | NONHSAT002346_smProtein_1040:1324 |
Length | 95 |
Molecular weight | 10796.8975 |
Aromaticity | 0.106382978723 |
Instability index | 49.7255319149 |
Isoelectric point | 7.66705322266 |
Runs | 12 |
Runs residual | 0.00115633672525 |
Runs probability | 0.0489607254314 |
Amino acid sequence | MPECIFVLLGPWNRYRCFLKDERNAMGALHARLQTYQECIIVSLFPNKEMRVTSFGLLTL MGVACLLLLIIVSCSDMIHSPAFTAFHLMILDRF |
Secondary structure | LLEEEEEELLLLLHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEELLLLLEEEELHHHHHH HHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHH HHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTT TTTTTTTTTTTTTTTToooooooooooooooooo |