NONHSAT001540

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT001540

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1134 nt

Genomic location

chr1-:24032291..24033424

Exon number

1

Exons

24032291..24033424

Genome context

Sequence
000001 atggagtttt cgctcttgtt gcccaggctg gagtgcaatg gcgcaatctc agctcaccgc aacctccgcc tcccgggttc 000080
000081 aagcgattct cctgcctcag cctccctagt agctgggatt acaggcatgt gccaccacgc tcggctaatt ttgtattttt 000160
000161 ttttagtaga gatggagttt ctccatgttg gtcaggctgg tctcgaactc ccgacctcag atgatcctcc cgtctcggcc 000240
000241 tcccaaagtg ctgagattac aggcatgagc caccatgccc ggcctctgcc tggctaattt ttgtggtaga aacagggttt 000320
000321 cactgatgtt gcccaagctg gtctcctgag ctcaagcagt ccacctgcct cagcctccca aagtgctggg attacaggcg 000400
000401 tgagccaccg tgcctggcct ttttatttta ttttttttaa gacacaggtg tcccactctt acccaggatg aagtgcagtg 000480
000481 gtgtgatcac agctcactgc agccttcaac tcctgagatc aagcaatcct cctgcctcag cctcccaagt agctgggacc 000560
000561 aaagacatgc accactacac ctggctaatt tttattttta tttttaattt tttgagacag agtctcactc tgtcacccag 000640
000641 gctggagtgc agtggcgcaa tcttggctca ctgcaacctc tgcctcccgg gttcaagtta ttctcctgcc ccagcctcct 000720
000721 gagtagctgg gactacaggc gcccaccacg cctagctaat ttttttgtat ttttagtaga gatggggttt caccatgttc 000800
000801 gccaggttgg tcttgatctc ttgaccttgt gatctgcctg cctcggcctc ccaaagtgct gggattacag gcgtgagcca 000880
000881 ccacgcccgg ccTAttttta atttttgttt gtttgaaatg gaatctcact ctgttaccca ggctggagtg caatggcaca 000960
000961 atctcggctc actgcaacct ctgcctcccg ggttcaagcg attctcctgt ctcagcctcc caagcagctg ggattacggg 001040
001041 cacctgccaa caccccgcta atttttgtat tttcattaga ggcggggttt caccatattt gtcaggctgg tctcaaactc 001120
001121 ctgacctcag gtga
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Predicted Small Protein

Name NONHSAT001540_smProtein_467:721
Length 85
Molecular weight 9066.4527
Aromaticity 0.0833333333333
Instability index 74.7654761905
Isoelectric point 8.75311279297
Runs 14
Runs residual 0.0326812253564
Runs probability 0.0434362934363
Amino acid sequence MKCSGVITAHCSLQLLRSSNPPASASQVAGTKDMHHYTWLIFIFIFNFLRQSLTLSPRLE
CSGAILAHCNLCLPGSSYSPAPAS
Secondary structure LLLLEEEEHHHLHHHHHLLLLLLLHHHHLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLEE
LLHHHHHHHHLLLLLLLLLLLLLL
PRMN -
PiMo -