NONHSAT001540
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT001540 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1134 nt |
Genomic location |
chr1-:24032291..24033424 |
Exon number |
1 |
Exons |
24032291..24033424 |
Genome context |
|
Sequence |
000001 atggagtttt cgctcttgtt gcccaggctg gagtgcaatg gcgcaatctc agctcaccgc aacctccgcc tcccgggttc 000080
000081 aagcgattct cctgcctcag cctccctagt agctgggatt acaggcatgt gccaccacgc tcggctaatt ttgtattttt 000160 000161 ttttagtaga gatggagttt ctccatgttg gtcaggctgg tctcgaactc ccgacctcag atgatcctcc cgtctcggcc 000240 000241 tcccaaagtg ctgagattac aggcatgagc caccatgccc ggcctctgcc tggctaattt ttgtggtaga aacagggttt 000320 000321 cactgatgtt gcccaagctg gtctcctgag ctcaagcagt ccacctgcct cagcctccca aagtgctggg attacaggcg 000400 000401 tgagccaccg tgcctggcct ttttatttta ttttttttaa gacacaggtg tcccactctt acccaggatg aagtgcagtg 000480 000481 gtgtgatcac agctcactgc agccttcaac tcctgagatc aagcaatcct cctgcctcag cctcccaagt agctgggacc 000560 000561 aaagacatgc accactacac ctggctaatt tttattttta tttttaattt tttgagacag agtctcactc tgtcacccag 000640 000641 gctggagtgc agtggcgcaa tcttggctca ctgcaacctc tgcctcccgg gttcaagtta ttctcctgcc ccagcctcct 000720 000721 gagtagctgg gactacaggc gcccaccacg cctagctaat ttttttgtat ttttagtaga gatggggttt caccatgttc 000800 000801 gccaggttgg tcttgatctc ttgaccttgt gatctgcctg cctcggcctc ccaaagtgct gggattacag gcgtgagcca 000880 000881 ccacgcccgg ccTAttttta atttttgttt gtttgaaatg gaatctcact ctgttaccca ggctggagtg caatggcaca 000960 000961 atctcggctc actgcaacct ctgcctcccg ggttcaagcg attctcctgt ctcagcctcc caagcagctg ggattacggg 001040 001041 cacctgccaa caccccgcta atttttgtat tttcattaga ggcggggttt caccatattt gtcaggctgg tctcaaactc 001120 001121 ctgacctcag gtga |
Predicted Small Protein
Name | NONHSAT001540_smProtein_467:721 |
Length | 85 |
Molecular weight | 9066.4527 |
Aromaticity | 0.0833333333333 |
Instability index | 74.7654761905 |
Isoelectric point | 8.75311279297 |
Runs | 14 |
Runs residual | 0.0326812253564 |
Runs probability | 0.0434362934363 |
Amino acid sequence | MKCSGVITAHCSLQLLRSSNPPASASQVAGTKDMHHYTWLIFIFIFNFLRQSLTLSPRLE CSGAILAHCNLCLPGSSYSPAPAS |
Secondary structure | LLLLEEEEHHHLHHHHHLLLLLLLHHHHLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLEE LLHHHHHHHHLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |