NONHSAT001312

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT001312

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3805 nt

Genomic location

chr1+:19923471..19956315

Exon number

5

Exons

19923471..19923603,19943752..19943830,19948594..19948641,19949968..19950077,19952881..19956315

Genome context

Sequence
000001 TCGCGAGACT TTCAGGGGTC GGAGCGCGGG GGCCGGCCGA GAGGAAAGCT GGAGGCGCGG GTGGGGAACA TGTCTGAGTC 000080
000081 GGAGCTCGGC AGGAAGTGGG ACCGGTGTCT GGCGGATGCG GTCGTGAAGA TAGAATCCTG GTAATTGATG TCCACCCGAG 000160
000161 AAATCCCTGC AGATGTTCCA GCCTCTGTCT AGTCCAGATA GCCACAGGAA GGGTACTGGT TTTGGATTAG GAATTGTTTT 000240
000241 CTCACTTACC TTCTTTAAAA GAAGAATGTG GCCATTAGCC TTCGGTTCTG GCATGGGATT AGGAATGGCT TATTCCAACT 000320
000321 GTCAGCATGA TTTCCAGGCT CCATATCTTC TACATGGAAA ATATGTCAAA GAGCAGGAGC AGTGACTTCA CCTGAGAACA 000400
000401 TCCCAGCGGG AGGACAAGAG AAATCATGTT TATTCCTCAG GAATACTGAA GTGCCCTGGA GTAAGCTGCC ATTCTTCTGT 000480
000481 AACAATGTTA TCAGTAATGC TTTAAACTCC AGCACCTGGT TATGCATTTG AAACCAAGTC TGTTTCTTGT TTTGTATTTT 000560
000561 CTCTCTGGAA GTTGTAAGGA GGTGGTCTTA AATAAATTAA ACAAAAAGAG GAAGTCCATT GCATGGCCTT TGTTTCTTCA 000640
000641 CCTTTGGTCT CTGAGCATGA GGAGGACTGT GTGTGAACTG CCAGCAGCTG TAGCCACCTG CTCACAGCCT CTCTGAGAAC 000720
000721 CCCCTGAAAC CAGTTGTTGG GTATCCTTCC CATTTGCCCC CTCAGGCGTA GTTTTCAGAA CTGCTTCCAC CTCGTAATCA 000800
000801 GAAGTTGAAG ATTGCTGCTG CGTGGCCTGA TGGAGATGAC TGATGTCTTA AGGCGCCTTT CCTTCTGTGG CACCTCTTCG 000880
000881 TGTGTTCTCA CCTGGGGACC TGGCAGGGCA CATCTCCGCT GTGCCTACTG CAAGGCGGTC CCACTGCTGC TGTATTAGCA 000960
000961 GGGGAAGAAT CCTGGCTGTG TGGATGGCCC ACTCCATTGA AGTCAAGTCC TGCAGCTTCA TAGAGCTTGA GACAGTCCAA 001040
001041 GCTTCAGCTC TGGAGGGCGG AGGAAAGCTC ATGGCATACC CACCTGGCCG GAGGAGCCCG ATTGGGGTTA ATTTTATCTT 001120
001121 CACGTAGCAG CTGAAGTTTG AGGACAAAAG GGCCACTTCT GATGCCCCTC TGAGTTTGTT CCTGTGGTTT CACTTGAACC 001200
001201 AGGGATGCTA GATGCAAAAG TCATATTTTA GCAATTTCTT CAGACGATAT ACAGAACCCC AGCGCTCAGC CGTTCTTATT 001280
001281 TCTTTTTCCT TATCGTAGAA TTAAGATAGG GAGAGCCCGA TCCCACTTGC CCCTGTatcc tgtaaatgtt gatttatcat 001360
001361 ctactgtaag cgaggcactg ttgtaagcag cagagataaa tggataaata gacacaggct tctgccttca aggagcttag 001440
001441 agtctgatgg aaagacagac gtgcaaacac aactctgaaa gaagtgtttt aatggagaag agaggtgtag gcaaagtaca 001520
001521 ctgagaacaa aggagaagga gcaactatgt ctccctagga tggccccaca ggcgacggaa tgcctgcgct gggacccgaa 001600
001601 gttgactggg aatcccagac agaaggaggg tagcctctgt gtttgctcag gatcatgtaa tgcatattat agctgggaaa 001680
001681 tcgcaagtag ttcagcatag ccagggtgtg taggggcagg ggaaaggcat ggagggggag gctggGCAAT AGGGTACAAC 001760
001761 TCATGTCTGA CTCCAGTTCT GGAACATTGA TTAGACCTTA GTTCTTGCAA GTGCTATAGT GAGTACATTC AGGGTAGCAA 001840
001841 ATACCCTCCC TCAGCCTCCC CACTCCCTTT TCCAGAAAGG TCTGCTAGGC TCTGCCCTGC AAACTGTCCA GGCTCCTCTG 001920
001921 CCCTCTGGGC TTGTTTTCCT CTTTATTGCT ACTTGGCTGT TTTTCACTTG GTCCTCTTCA TTCTATGATT AAGGCAACCC 002000
002001 ATATAATTGA AAGAAAAATA ATGTGCAGCC TGTTTCATCC CTTCCACTTG ttttcttact atttatttat ttatttctga 002080
002081 gatggaattt tgctcttgtt gcccaggctg gagtgcaatg gtggcgatct cggcctgctg caacctccgc ttcctgggtt 002160
002161 caagcgcttc tcctgcctca gcctcccgag tagctgggat tacaggcatg cgccatcaca cctggctaat tttgtatttt 002240
002241 tagtagagac ggtgtttctc cttggtcatg ctggtctcca actcccgacc tcaggtgatc ctcccgcctc ggcctcccaa 002320
002321 agtgctggga ttacaggcgt gagccaccgc acccagccTC CTATTTGCTT TAAAAGTAAT TTCCTggccg gatgcggtgg 002400
002401 ctcacacctg taatcccagc actttgggag gccaaggcag gtggatcatg aggtcaagag atcaagacca tcctggccaa 002480
002481 cattgtaaaa ccctgtctct actaaaaata taaaaatcag ctgggcatgg tggcgcacac ctgtagtccc agctactcag 002560
002561 gaggttgagg caggagaatc atttgaaccc gggaggcaga ggttgcggtg agctgagatc gcgccactgc actccagccc 002640
002641 ggcgacagag cgagaatctg tctcaaaaaa aaaaaaaaaa aaaaaGCATT TTCCTTCCCC AATTTTTCTG TCATTTTCCC 002720
002721 ATCCTCATTC AGGCAGAGAG AAGAATAACA TGCCCCCTTC CAAAAAAGAC AAAACACAAG GTAGCCACAA ATTCCCTAGA 002800
002801 CACATTAGAA AAATAGGGAG TGGAGAGGGG CATTGGAATG AAAGTTCTCT ATCTCATTAG CTGTTAGGCT TTAGGCATTT 002880
002881 ATTTGGATGG ATCCCTTTGG CACCTTGGAA GCACCACTGA AGTGCTCTGA GAAAGGGGTC AGCTGTCTGA GGGAATAGTT 002960
002961 CTGGATAGAG GCCACAGGAA GCACTGGCCA GTTGCTTTAG TTCTAGATAG CTTTGTATTC CCGCCTTGTT GCCCTTAGCG 003040
003041 GAGGCTGGCC CAAAGCACAC TTGATCTTGT CCCCACTCCC TGCCCCCATC TCAGATCAAC CTTCAGAAAG TCCCGGCTTG 003120
003121 TTGGCAAAGG CACACATTCT GTGTTACTCT TAAGTTTCAT TAGAAATTCA AGTCCTCTGG GGCCCTGTTC CCTTGTGGGC 003200
003201 TTGTGCAACT GACTTTGTTT CTTGTCTGCC TTTCTGGAAC CAAATCCAAG GAAATTCATG GGTTTGGGGA GACAGCGATG 003280
003281 GGAACCCAGC AGGGCACAGG ATGCTAGGAT AAAGCTGTGG CGCCCCAAAA GTGGCCTGCT CTGCCAACAT ACATAAATAC 003360
003361 ATACAGTCTG AGCTTGACAC TGTATAATTT GGCCCAGAAC AATATGTATT TTGAGCTCAT TTAGGTGAAT GACTTTGGCA 003440
003441 TTCCATGTAC CCACTAGGGG AAGCTTTATC AGGCTGCATT TGCCTTATGC AGAAGTATGC CTTTGTTCTG AGAAATGGCC 003520
003521 TCAGAACACA CTGTTGAGCT GTCTCCTTTA GTGAGTGTCA TCCTCTCATC CATTTCAAAA GATTGCAGAT GCCGTCTTGA 003600
003601 AGTCCTGCTT GTAAGAAATG CAGGGGTTGG GAATGGAGGA GATGACGATG TAGTTTTGCT TTTAGTTTTC CCAAACCTGT 003680
003681 TTACATTTTT TAAAAATGTA ACCAACCCAT AATTGCATTT TACTTGTCGT GGTTCGATCT GATTGTATTG TCGAAGGACT 003760
003761 ATTTTTGAAC CTGTCCAAAT AAACTCTGCA AAGTATTTCC ACAAG
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Predicted Small Protein

Name NONHSAT001312_smProtein_521:715
Length 65
Molecular weight 7314.8163
Aromaticity 0.09375
Instability index 59.06875
Isoelectric point 9.94549560547
Runs 10
Runs residual 0.00765625
Runs probability 0.042315845257
Amino acid sequence MHLKPSLFLVLYFLSGSCKEVVLNKLNKKRKSIAWPLFLHLWSLSMRRTVCELPAAVATC
SQPL
Secondary structure LLLLLLEEEEEHHHLLLHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHLHHHHHHH
LLLL
PRMN -
PiMo -