NONHSAT000162

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT000162

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6482 nt

Genomic location

chr1+:762971..794826

Exon number

8

Exons

762971..763155,764383..764484,783034..783186,787307..787490,788051..788146,788771..788854,788953..788956,789153..794826

Genome context

Sequence
000001 ccgggccggg ccggggcggg gtctcgggca ggggcggggA GCTTACCGAC CTCCCGCCCC CGCTGCGCGC GTTTCTGGCC 000080
000081 CTGCCAGTGT CTCCGCCGGT TGAAAGCGCG TGTCTGCGTC GGGTTCTGTT GGAGTGCGTT CGGTGCGCCG TGGGTCCGCG 000160
000161 CTGCTTCCAC CCAACTTCCT GTTAGtttct ctcctgtcac aatggcatga tctcggctca ctgcgacctc tgcttcctgg 000240
000241 gttcaaggat tctcctgcct cagcctccca agtagctggg attacagTTT CCATCATTAT CTTCTATGGA GTTCTTCATT 000320
000321 CCCACATCTG TGGACCTTAA AATCCTACCG TTGAGTGCCT GCCTTGGATC AGCAGTCAGT TCGTTACCTT GGTTCTCAGA 000400
000401 CGATGCTTGC AACAACGCCA TGCGATTCGC CCACTCTTGG GTTACATTAG TTATACACTC TGGAGGTGAC TTGACCTGTC 000480
000481 ATTGTGAACA ATTATTGCTC TTGGACGACC CAGGACATAG GCCAGCCAGT ACGTACCCCA GTGTGTTGGA GAATCGCGCT 000560
000561 CGGCTTCTTC CTCTGTGCTG AGTCATGAAA GTTGCCGGAG CAGGTGCAGT TACACAACCT CCAGGTATGA TCCTGTTTAA 000640
000641 GGACTGGATT TAGGATAACT ACTTAGAGGT TAAAAGTCAC AAGGGTGTAT GGATGAGGCT GGAGTGATCT GGGACCAAAG 000720
000721 acatctaggc ttgctgtcaa ggcttctgat caacatgaga tgaccGCCGT GTGGTAAACT GATGAACCCT GACCCTGATC 000800
000801 AACATGAGAT GACCGCCGTG TGGTAAACTG ATGAACCCCG ACCCTGATCA ACATGAGATG ACCGCCGTGT GGTAAACTGA 000880
000881 TGAACCCCGA CCCTGATCAA CATGAGATGA CTGCCGTGTG GTAAACTGAT GAACCCTGAC CCATTAGGCT TTGGCTACAG 000960
000961 AATGTGGAAA TAAGTTGTGT TACTACATGT GTGTAATCCT AGGGTGCAGG ACACCGGCCG GGAGGTTCCA TAGAGTGATG 001040
001041 GGTTCTGCAG GTAACTCATC CTCTAGTCCT CTGTAAGCTC CTAGAAGGAA GAAATTATGT CCTTTAGACT AATAAAATTC 001120
001121 CTCCAAACCA AATACAGCAC CTACTGTGAA GACACAAAGA TACTTTTAGA ATAGTAAAAA CTTTATCCAT TGAGAAATTC 001200
001201 CTTAATGAAA CAGTATCCAA GAAGTCATTT GCCAGCAGAT TTCTTAGAGG TGCGATAAAG AAGAGGACAT TGCCAGTCGT 001280
001281 CACAGCAGCT GCAATAGCTC CTCTCTATTG TTAAACAGTG GGATATCTTG TGCAGGTTTT CAGTTGACAA TCAATTTTAA 001360
001361 AGATTAGTTT CGGTCCCCAT CAATCAATTA TTTATTAACC CATCAATAAA AATTTAAATG CTCTGTGAGG TACAATAGCT 001440
001441 ATTAAAAGAG ACAGAGGCAC TTTCTGTGTC CAGAGGGGCT TTTAGTCTGC TCTGGAAAGC AAGATGCGTG CAGATGAGTG 001520
001521 ACGCAGTGCA TCGTGTGGAT GCAAAGGGAG GGACTCACAT GGGAACCAGA GGAGCTACGA AGGGAGGCAG TGGGGACTGG 001600
001601 TGGGTCGAGA CCTGGAAATA ACACATGAAT AGGCAACAAA GGTTTCCTTT CCTCTTCCAT GCACTTCAGT CCTTGAAAAA 001680
001681 CGTCTTACCA CGGAATTCCA CAGCGTACCA AGCGATTCCA CAGCTTGATG GCACACTCTC CTTTCTCAGC ATTCTTGAAA 001760
001761 ATGGCGTGTG AGCCAAGCCA TCTTACTGAG AAATTACCTT AAACCATTTG ATGAACCAAA AATATTTTGT AATACCCATC 001840
001841 TCCGACATTA GGTAGGCAAA TCACACAGAA ACACCGAGGT CTTCTGAGTC ATATTTATCT GAAAAATCAC AGCTTGGGTG 001920
001921 CATGTGAAGC CAGAGGAGCA CTCCTGGGGC CTGCGGTGCC ATCACTCAGC TCCCCTGGGC TTCACATGGC CATGGAGCAC 002000
002001 CCAGCAAGTG TAGGCTCTGA GCCTTCAGGG AGGGGCGGCA TCAGCCAGCA CCATCGTCTC CTGGGTCTTG TGCCTCTTCC 002080
002081 TTGGTTGCGG TGTTGTCAGG GCCAGAATTG GGCAATTCCG GGTGACATCC AGGTGTGGCT GCTGACACGG AGCACAGGTG 002160
002161 AGGTTCACTG AGGTAAGTGG GCCATGGCCT TGGGCTTCTA GTTCAGAGCA CACCATCCAC TCAGCATGTG AACCCAGCTC 002240
002241 CAAAGCgtat gtgtgcatgt gtgtacctgt gcacattgcg catgtctctg tgtatgcatg tgctttgatg catgttgatg 002320
002321 tacgggtgta tctgtgtatt gtgtatgcac acacgagcat atgtgtacat gaatttgtat tgcacatgtg tTTAATGCGA 002400
002401 ACACGTGTCA tgtgtatgtg ttcacatgca tgtgtgtctg tgtactgtgt gcaacagtgt gtgcaagtgt gtatatgtgg 002480
002481 gtttatgttt gtacagtgtg tgtagtgtgt gtacacatat acacctgtgt gcatgtgtac atggtattta agcatgtttg 002560
002561 cacgtgtgtt tgtgcttgca tgtgctgcgt gtttgtgtTG GTGGGATGTG GGGAGGCTGC TGTGGAGACA AAAGCTGGAG 002640
002641 AGAACTTGGT AGAGTAACCC AGGTCAGGAA ATGGCACCTG CAAAGGAAGG CTGGAGTGCC TGGGATTCAC GTTGAAATGG 002720
002721 CCAATCCGTC AGCTGGGCTG GACACAGCCA TCACGCTGGG CAGCTGTGAG GTTAAAACAG AAAGTCTGGG CTGTGGGGAG 002800
002801 GCTGAGAATT GAGATGCATG TATGAGATGA GTCACGAGGG CCAAGTGGTG TGTGTGAGAA AGCAGGCACA GCACCACTAA 002880
002881 ACACTAAGGA GATTTCAGGG GAGTTACGGG TGGAGGGAGG ACATCAGATC TACCCTGGAA GTTAAACGTG TTTCGAGTGC 002960
002961 ATTAAATACT ATGGGCCACA GACGCCTTGT CTCCATATCT ACTCTTTTAT AAATGAAGTA AAGTTCTTGG GAAATACTTT 003040
003041 TCTCACTCTA AAGCTCACAA TCTATCTTGC AAAAAATATT TTAAATTCCA TCTCAAATAA GCCAGGGTGA AAAGGGAGCC 003120
003121 TGTGCACCAG ACACTGCCAG CCTTGCCTGG CTCTCGCCTT CTTGCTCTTC CTTCCCCACC TGCTGGGGAT TTTCTTAACG 003200
003201 ATGGAGATGG GTTTGGGTTT GTCCTGCTGT GCTCTGCTCC CCATTCCCGG ATCCAAGGTC CTGCCTCTGT CCTGTCCCCT 003280
003281 GAGCCACCTC AGGGATGCAG GGTCCCCCAC CTGGTCAAGT GCCCAGTGCT GTGTTGTCAT TTGCAAGTTC TTCCTGTGAC 003360
003361 TGAACTCCAA ATGGCACTGG GACTGCTGAC TCCACCCACT GGACAACCCG TGTTCTTGCT TTTGGGGTTT CTGAAACAGC 003440
003441 CCCAAGACTC TGGGCATCTT GATTTTGCTC CCATTGCTTC TCAGGACACC CTGCTCCTGT GGTTTGCAGC CCCGGCCTTC 003520
003521 TCTTCGAGGA CGCCTCTGCT CTTCTGCCTC ACACTCGGAT TGGACCTTCT TCAGCACAGC CAGTGGCCGA GGCTTCCTCC 003600
003601 CTGGGGCTCA GTGGAGCAGG ACAGATGCTG CATCCAAACT CTTCCATTGG GTTCCAGTCT GTTCCAGTCA TGCCCTTGAG 003680
003681 CCTCTAAAGC TCCTAGGTGA GAGACGTAGC AGCTGACAGC ACTTCCCACT TGATTTGGGT GGACTCCAGC CTCCCCAGCA 003760
003761 ACAATAAGAG ATCAAAAGCA TCGTTGAGGA AGCAGCTTGC TGAAACGCTG AGTGCCCGCC ACTCTCAGGT CAGGTGGGAC 003840
003841 CGGCAGGCCA GCATGAGTTC CTGAACACTT GGTTCTCAAT ACTGGCCACA GCCACACTGT AAGGGGAAAC AAGAGGGCAC 003920
003921 TGTATGCAAA CATCTCTTGA ACTCTGGAGT CTGCTCACCT TCCTGCCTCA AGCCCCTCTC CCACGTGGTC CAGTCACCAT 004000
004001 TCTCCACAGA GACTACCCTA AAACCCAGCG ACTCTCGTGT GCCTGCAGAA TGGCACAGCC CGTTCTCATA GCAGCACTCC 004080
004081 TGTTTAATCA GAGGGATGTT AACGACCAAG TCATATTTGC TCGATTTGTG TTCAACATAT TTCATTTGTA CCGATAAAAC 004160
004161 TTAAAAATAT CCCCACACAT GCATTGCCTA TTAAAGAGTA TCTTCCAGGT ACACCTCCCT TACACATCAG TTAACTTGAT 004240
004241 AATTTCTTCC CATTCTTGTG CAATAAATTT CCTTCCTGAT CAGCTCTGTC CAGCAGCAAC AATAATCCAC GTAGAGACAT 004320
004321 GCAAACTAAA AGTCCGTTAG TGGAGGCACG AAGCTGATGA GGCTTGGAAA AAAATGACCG ATTTGATTAA AATTAGGACC 004400
004401 CATGGGAGTG GAGCTCTGCC TATTTTAGAG GCAAAGTAAA TGCCTGGGAG TCCAATCACC GACATTCTGT TTGAGGTTTC 004480
004481 TAATCACAAG GAAGATGGAG AAAATGCAGA ACAAGTGGTC AAGAACAGGG AGATAATAAA TAGAATATTT ATGGGCTGAG 004560
004561 GAAAACAATT ACCAGGGGAA AGCCCAAGAA GCAAAGATGA ACAGAGAACG TGCTGACTGC GCTCGTTTGG AAAGGCCTCA 004640
004641 TGGCCAAAGG AGGAGAGGCA TTATGAGGAG CAGTGACCGA GTGGGCAGGA CCCCCGGGGA TCAGGAAAGG TGCACGGGGG 004720
004721 GAAATGAGAG GCCTGAGCGG CTTCCCAGCG AAGGTTTTTG AAGCACGGTT TGATTTTCTC TCTCCCCCTC ACCATCCCCA 004800
004801 AATTTTAGTT GTGACTATCT CCAGGTACAT GGCTTGCGAC AGGCGGTGTA TAAAAACTAA TGTCAGTTTA ATTTTAAAAC 004880
004881 CTTAGCCATT TTCTGGAACT TAAATATCAA AGAGAAAATG TCCACATATG ATGTTAATTG AGGTTTGTCT CACTGGTGAT 004960
004961 TTGTGCTGAT TCAATTCCTG TTTCTTTTTT TTTTTCTTAA GGGGTCAGTT TTAGAATTGG GAGATAGGTG TATAACATAT 005040
005041 GACTATACAG CGCAGGTTGG TTTTTTAACA TAGAAATATC TGCCTTTAAA TGAGAACTGA AAACGGAGCT TCTTGGAGGC 005120
005121 CACCTGCTGG TGGCAGTGAT CTGACCGCTG TTTAAGCTTT CTTTGAACTC CTTTTTTTAA AACAGCCTCC ATAATCAATG 005200
005201 GTGTACGATC TACTCTCGTG GTAAAACTTA CTCAGTGAAG AGTGTGTTTT ATTTTCTGAG GAGCTGAACT GTTCCAACCT 005280
005281 GAGTATTCTG AATAAGGACA GTGGTCGAGC ATGAGTGATG CCATCTGGGC TTAGAAATAA GTGGGCCTAA AATCTGATTG 005360
005361 TTTTCATACA TTGTTCAGAT ATTGACGCAA ATAGCAATTT ATTTTGTAAA AAATGATTGG TATCCGGAAC TTGCAACAGC 005440
005441 TGTGTGTGGC TTGAAGGGAG ATGAAGTGGT GAAGGCCTGG TTTCCACCGA AGCTCTCACA GCCCAGCCTT TCACTGTGTG 005520
005521 GCCGGGGGAA GGGTGCTCCG GGTGGGGGAC GGGAATGGTG GGACTGGGGA TGCCACGGGA CAAGGCTGCT GGCCTGGAAG 005600
005601 GTAGTCACGT GGAGAACCGC AGGAGATGAG ATTGGAAAGT AGTAATAAGC CATGTGGATA AGAACAGAGG AGCGGGTTTT 005680
005681 AAGGGGGACG TCCTGAAATG CTGCTCATGT CGTTTCAGTT CCATAGACCA CAGGAAATGC AGGTGAGAGG GCAGCCCGGT 005760
005761 GGGAAGGAAG GAAGAGGGTG GTGGTGAGCC AGGTGAGTGT GGAGCCGCCC AGGGCACCGT GCTGTGCGAT AGCTCAGGCA 005840
005841 TCGGGTGCTT CTGCCAAACC CTTCAGCAGC TGGTTTGGGG CCAAACGTCC TTCCTGTGTG AGAGAAGGCA GAGCCTAGGC 005920
005921 AGCATTCCAA ACCCCATCCA GATGGGAGGC TGAGTGCAGA GCAAACGGAG CCCAGCACTC CAGAGCCGTG TCCCTTCACT 006000
006001 GCCATgatca catcacaaac agcgaggctt ggagaggact taagagctcc ttcaatgcca tcttccatcc actgcGTGAG 006080
006081 CCAGAATAGA AAAAAAGGAA TAAGAAGAGG TCGGTTAAGC TCTCTATTAA GTTGAGAAAA TGGGAACTTC AGGTGATCAT 006160
006161 GTGAGATATT CAAGTTAAAA AAATTATTTA AAAAGCACAT TCTTATTATT AAAATTTTAG AAAGTACAGA GAAGGAAATT 006240
006241 TTAATAACCT ACACCTAGAA CACTAAGATA CTGGTAACGT AGAAAAATGT GTAGTTAATG CCTTGATGGA TTCTTTTCTA 006320
006321 TTTTTTTCTC TAGCAATATT TATGTCTATC CACAGAAAGC GTACACTCAT GTATTTGCAT GGCTAATata ttttatgtaa 006400
006401 agttctatat atttctcaac atttcactta atatttcttt ataaacattt ttccagtgaa taaaaatttt tccaaacagt 006480
006481 aa
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Predicted Small Protein

Name NONHSAT000162_smProtein_305:580
Length 92
Molecular weight 9983.423
Aromaticity 0.0769230769231
Instability index 40.5846153846
Isoelectric point 5.29876708984
Runs 14
Runs residual 0.0203754578755
Runs probability 0.0480922098569
Amino acid sequence MEFFIPTSVDLKILPLSACLGSAVSSLPWFSDDACNNAMRFAHSWVTLVIHSGGDLTCHC
EQLLLLDDPGHRPASTYPSVLENRARLLPLC
Secondary structure LEEEELLLLLLEELLLLHHHLLLLLLLLLLLHHHHHHHHHHHHHHEEEEEELLLLLLHHH
HHHHHLLLLLLLLLLLLLHHHHHHHHHLLLL
PRMN -
PiMo -