FAM230I

From LncRNAWiki
Jump to: navigation, search

FAM230I, a lncRNA gene formed from a large segment of the 3' half of theFAM230C sequence duplicated in chr22.

Annotated Information

Name

FAM230I: family with sequence similarity 230 member I (HGNC:52446)

Alias

LINC01658: long intergenic non-protein coding RNA 1658 (HGNC:52446)

Characteristics

This gene belongs to the family of long 8 intergenic non-coding RNA genes in human chromosomal region 22q11.23. This gene carries the TBTA sequence which consists of satellite DNA, Alu elements, and AT-rich sequences.[1]

Function

Functions of RNA transcripts from this family are not known.[1]

Regulation

Please input information here.

Expression

RNA transcripts of these eight FAM230C-related genes are expressed almost exclusively in the testes. [1]

Disease

Please input information here.

Labs working on this lncRNA

Department of Molecular Genetics and Microbiology, School of Medicine Stony Brook University, Stony Brook, New York, United States of America.

References

  1. 1.0 1.1 1.2 Delihas N. A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence[J]. Plos One. 2018, 13(4):e0195702-e0195702.

Sequence

>gi|388882|ref|NR_110539.1| Homo sapiens family with sequence similarity 230 member I (FAM230I), long non-coding RNA

000001 CTGTGCTGAG TTTTTCGAAG GTCAGAGCAG ATTGAACCTT TGTGCTTTCA TTTTTCCTGA TTTTGATTTT TCTTATGGGG 000080
000081 ATCCACTTTT CCTGCATTCG AGGTGACTTG AAGAAGCCTT CCAAAAAGCG TGTGAAAAGG GAGCCCTACT CTACTACCAT 000160
000161 GTTACAGGTG ACTTCATTGA GCCCAATCAA TGAAATTTTG AGAAGATACA GCCTGTACAC CAACCAGCAT TGGAGGCATC 000240
000241 ATGGCTTCTG GAGAAAGAAG ATACAGCCAC AAGAAGCCTC TGAGGAGCCT CCAGCTCACA AGGACAGAGG AGGTGGAGAG 000320
000321 AGGCCAGTCA ACGCGAGGGT GGTGCGGGTG GCCCCTCTGA GGCCTGGTTT TGCTCTTTGT GGGTACGCTG TACAAGACAT 000400
000401 CTCTAAAGAA GACACTGTAT ATGACATCTG TAATGAGGAT GCTGTAGACA TCTCTGATGA GGACACTGTA GATATCTCTA 000480
000481 ATGAGGCTTC TGTACATGAC ATCTCTAATG AGGCTGCTGT ATGTGACATC TCTAACGATG CCGTAAACAT CTCTAATGAG 000560
000561 GCTGCTGTAC GTGACATCTC TAATGACGCT GTAGACATCT GTAATGAGGC TGCTGTACAT GACATCTCTA ATGAGGACAC 000640
000641 TATAGAAGAC ATTTCTTATG AGGACACTGT ATACGACATC ACTAATGAGG ATGCTGTACG ATACCTCTGT AAAAAAGATG 000720
000721 CTACCAAGGA GCCATTGACA CTGGAGAATG ATTTGATTGT GGAGAGCATG TCTGATGACG AGGATTTTGC AGCTTAAAGG 000800
000801 GAGCTCCCGG GGTGAGTGAT GGAGGCGGGA TCGGACCCTG GCAGTTTGAC GGCAACACCT GTGTTCCTCT GCACTGGGCC 000880
000881 GTGGATGACA TTACACACCT TGGTGAGAAT CAGGAATTGA GGCTAATCAC ATCTGAAATT GAGCTCGCTC ACTGGACAGG 000960
000961 ATAGACTGGG CGCCCAGGCC TCAAGGGCTT ATGATTTCTT CTCGGGTTTG AAACATGCCC CCAGATGAGC AAGACGGGGC 001040
001041 TGCCACATTG ACGGAGCAGC TGCGGGACAC ACCCAAGAAA CCTCCTGGAG AACACAGGGG ACATTCACGG CTGGAGGCTT 001120
001121 CATCTATGGC CGGGGGCTTC ATCCATGAGC TGGGGACTTC ATCCATGGGC TGGGGACTTC ATCCATGACT GGGGACCTCA 001200
001201 TCCACGTCTG GAGACTTCAT CCGCGACTGG GGGCTTCATC CATGGGCTGG GGGATTCATC CACGGGCTGG GGGCTTCATC 001280
001281 CATCACTGGG GGCTTCATCC ACGGGCTGGG GGCTTCATCC ATGACTGGGG GCTTCATCCA CGGGCTGGGG GCTTCATCCA 001360
001361 TGGGCTGGGG GCTTCATCCA TGACTGGGGG CTTCATCCAC GGGCTGGGGG CTTCATCCAT GACTGGGGAC TTCATCCACG 001440
001441 ACTGGAGACT TCATCCATAG GCTGGGGGCT TCATCTACAG CTGGAGACTT CATCCACAGC AGGGGCTTCA TCCTTGGTTG 001520
001521 GTTTGCCTGA TCTGTATCTG AGCCACAGAT ACAGATTATT AAACAGATAA TAATTTTATT GA