ENST00000608313.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000608313.1 |
Source |
Gencode19 |
Same with |
, |
Classification |
intergenic |
Length |
888 nt |
Genomic location |
chr17-:18420696..18432298 |
Exon number |
4 |
Exons |
18420696..18420787,18422796..18422988,18430884..18431074,18431887..18432298 |
Genome context |
|
Sequence |
000001 CCCTTTCTGT GAGCTGTTCA CTCTGTTGAT AGTTTCTTTT GCCGTAAAGA AGCTCTTTAG TTTAATTAGG TCCCATTTGC 000080
000081 CAATTTTTGT TTTTCTTGCA ATTACTTTTG GCATCTTTGT CATGAAGATC ATTTCCAGGT CCTATGTCCG CAATGGTATT 000160 000161 TCCTAGGTTA TCGTCCAAGG TTTTAATATG TTTTCATTTT AGATTTAAGT TTTTAATCCT GCCTTTGCCT CCCAAAGTGC 000240 000241 TGGGATTACA AGCGTGAGCT ACCACACCCA GCGAGGAAGC CAAGTTTAAC GTGTGTGCTC CACTCCTCCA ACCTGGCCAA 000320 000321 AGGGCAGTCA TCATCACTGG CCACTGCTGA CCACAGCCTT TAGAAACTCC CCTTGAACGT GCTGGGCTGA CCTTCCTCTG 000400 000401 ATCACAGGCA AGGCAAAGGA AAACGACAGG CCCTTGCCTT CCCGGTCCTC AAGGGTCAGC TGTAAGATGA TGTCATAAAG 000480 000481 CCAGATCAGG TCCTGGGGCC GGGGGAAGCA CTTGCTGTCA TCCTCTGGCT GCTGCTGCAG CAGAGCCCTC TGCAGACCTT 000560 000561 TGGCCATGCT CTCATTACGC TTGATTGCCA TTGACAGCTT GATGTTGTAG ATGAGCATGA GAGTGTGGAG CAGAGTTGGC 000640 000641 GAGTGCAAGT CGAGCCCATC AACCTGGACA GCTGTCTCCG TGCTTTCACC AGTGAGGAAG AGCTAGGGGA AGATGAGATA 000720 000721 TACTACTGTT CCAAGTGTAA GACCCACTGC TTTAGCAACA AAGAAGCTGG ATCTCTGGAG GCTTCCACCC TTCCTGATTA 000800 000801 TTCACCTTAA GCGATTTCAA TTTGTAAATG ATCAGTGGAT AAAATCACAG AAAATTGTCA AATTTCCTCG GGAAAGTTTT 000880 000881 GATCCGAG |
Predicted Small Protein
Name | ENST00000608313.1_smProtein_143:256 |
Length | 38 |
Molecular weight | 4246.2872 |
Aromaticity | 0.135135135135 |
Instability index | 48.1567567568 |
Isoelectric point | 11.1054077148 |
Runs | 7 |
Runs residual | 0.009422266303 |
Runs probability | 0.0522497287204 |
Amino acid sequence | MSAMVFPRLSSKVLICFHFRFKFLILPLPPKVLGLQA |
Secondary structure | LLEEEELLLLLLEEEEEEHHHEEEEELLLLLLLLLLL |
PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | oooooooooooTTTTTTTTTTTTTTTTTTiiiiiiii |