ENST00000607850.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000607850.1 |
Source |
Gencode19 |
Same with |
lnc-C5orf32-1:2,NONHSAT104160 |
Classification |
intergenic |
Length |
5951 nt |
Genomic location |
chr5+:139541538..139552636 |
Exon number |
3 |
Exons |
139541538..139547062,139547266..139547387,139552333..139552636 |
Genome context |
|
Sequence |
000001 TGAGACAGGG TTTTGCTCTG TTGCCCAGGC TGGAGTGCAG TGGTGTGATC ATAGCTCACT GCAGCCTCAA CCTCCTGGGC 000080
000081 TCAAGTAATC CTCCCACCTC AGCCTCTCAG CCTCACAAGT AGCTGGGACT ACAGGTGCAC ACTGCCACAC CCAGCTAATT 000160 000161 TTGGGGTTTT GGGGTTGTAT TTTTTTAGAG ATGGGGTTTC ACCATGCTGC CCAGGTGTGT CTCAATCTCC TGAGCTCAAG 000240 000241 CAATTTGCCC ACCTCAGCCT CCCAAAGTGC TGGGACTACA GGCATGAGCC ACTGTGCCCG GCCTATAACC TTTCTTAAAT 000320 000321 ACTTCGAGTG GCTTCCCATC ACACTCAGAA TAAAATTCAA ACTCAAAGGG CCTGCCAGGC TGCCTCTCCT GATCTCTTAT 000400 000401 GCCTCTTCCC CTCACTCTGC TCCAGCCACA GTGACTTCCT TGTTTCTCTA ATGCCCTAAG CTTGTTCCTC CCTCAAGTCT 000480 000481 TTCACCTGCG GTTCCCTCCA CCTGGAATGT TCTTGCCCTG GGTATACACA TGGCTCAGTT CCTCATTTGG TTCTGTCTAA 000560 000561 TGTCAGCTCC TCAGAGGCCT TCCCTGGTGG TCAAAATGAG CCCCATCCCT GCGCTCACCC TCGGTTCCCT TATCCTGTTT 000640 000641 TATTTTCTTC ATAGCACTTA TTTCTCCTTG ATATAATATT ATATCAATTG TTGACTTGCG TCCTGTCTGT CTCCCTATAA 000720 000721 GGACAGGGCT TGGCTTTTTG ATGGCTATCT CCAGTGCTTA ACACAGTGCT TGGCATATAG AAGGAAATAA TATTTGTGGA 000800 000801 ATGAATGTGT ATGGGAAACC TCTTGTAACC CTCCTGTCAT CCTTTTGGCC CACGTTTTAC TCAGCCATCA CTGTGGCAAC 000880 000881 CAGCTTGGAG CAGGTAAACG CACCGAGGCT CAGCTGCTCC ACACGGCTCT GCTCTTGCCT TCTGCTGGGG CTTCTCCCTG 000960 000961 GACTCCAGTA CTGCAAACTG GATGTCTGAG GATGTTAACC CCTTGGGAGT AACCCTGGGC CCTTGGCGGC TGGGGTTGGT 001040 001041 GGCTATGTGC TTTCTTCTCT GACACTCAGT GGACAACTAG GAGGTGCACT CTACACTGCT CCTCATCACA TCCCAGCTGG 001120 001121 GTCAAGCCCC AGCTGCCCAC AGTGGTGACC AGCTCTATAA CACACCATGG CACTGGCTTT CCCTTGTTCC TACTTCATGA 001200 001201 GTCTCCCCAG TCCCCTATTC CTGCTCCCTG GGATCATGTC CTGAATTAAC TTGCAAGCAT GCTCTTTCTC TGCTTTCTCT 001280 001281 ACCTGTAAGA AGGTAGCAGG GATAGAGAAG AGCCCAGGTT ACATTAGAAC AATATATGAA ACTTATAGAC TAGTAGGAGA 001360 001361 GACCAATACA ACAAAATTTA AATAACTACA GGTAAAGAGA TGGACTTTTC AACAGATGGT GTTGGAATAA CTGAATATCC 001440 001441 ATATGGAATG CAATGCATTT CAATCCTTAC TTCATACCAT ACTCAAAATA AATCAAAGAA CTATTAAAAA AAAAACTATA 001520 001521 AAACTTCTGG AAGAAAGAAA TTCTGCCAGG CACGGTGGCT CATGCCTGTA ATCCCAGCAC TTTGGGAAGC CGAGGTGGGT 001600 001601 GGATCACGAG GTCAGCAGTT CGAGAACAGC CTGACCAACA TGGTGAAACC CCGTCTCTAC TAAAAATACA AAAACAATTA 001680 001681 GCTGGGCATG GTGGCAGGCG CCTGTAATCC CAGTGACTTG GGAGGCTAAG GCAGGAGAAT TGCTTGAAAC CGGAAGGCAG 001760 001761 AGGTTGCAGT GAGCCGAGAT TGTGCCACTG CACTCTAGCC TGGGCAATAA GAGCAAAACT CCATCTCAAA AAAAAAAAAA 001840 001841 AGAAAGAAAG AAAGAAGAAA TTCTTCATGA TGGTGGGGTA GGCAGAGATC ATAGAAAGAA CTTACTATAA AAGGAGGAAA 001920 001921 AAGACAGCAT TAAAAAGATA AATAGGTAAG TCATACACTA GGAGAAGGTT TTGTAATACA TACTTTTGAC AAAAGATTTC 002000 002001 TATCTGGAAC ATATAAAGAA ATCTAATAAC TCAATAGTAA GACCCCAACC AAAATAAAAT ATGGGCAAAA AAAATTTAAC 002080 002081 AAATACCTCA AAAAGAAGAT ATACAAACAT CCAATAAACA CACATGAAAA GTTGTTCAAC ATTATTAGCC ATTAGGGAAA 002160 002161 TGTAAATTAA AATCACAATG AGATAACATC ACACACTCAC TAGAATGGCT AAACTTTAGG AGAATCGGTA ATAACGTGTT 002240 002241 GGTGACGATG TGGAACAACT GGAACTCTTA TATATTGCTG GCAGGAGTGT GAACTGGAAC AGTCACTTGG AAAAAAGTTT 002320 002321 GGTGGTGTCT TATAAAGTTA AACATATACT TACCAATGCC CAGCAATCTC CATTATAGGT ATGGTTGGGA TGTGATTTGT 002400 002401 CTGTGTCAAA ACTCATGTTG AAGTTTGCTT GCCAGTTCTG TCCACTGGGG AGGTAAGGCC TAGTGGGAGG TGCTTGGATC 002480 002481 ATAGGGGTGA ATCCCTTATG AAAATAGGTT GGTGCTGTTG TCCTAGTAGA GTGTTTTCTT GTTGTTGTTG TTGTTCTCAA 002560 002561 GAGACTGGAT CAATTCTCAA GGAATGTATT AGTTCCTGAG CAAGGGGTTG TAATAAAGTG AAGTTTCTCC TCCTGTTTGA 002640 002641 TCTCTCTTTG CATACGTCTG CTTCCCCTTT AACCTTTTCT GCCATGTTTT GACCCAGGAC AAAAGCCCTC ACCAGAAGCC 002720 002721 GAGTGGATGC CACTGCCACT TGAACTTCCC AGTCTGCAGA ACTGTGAGCT ACACCTTTTT ATAAATGACC CATCTCAAGT 002800 002801 ATTCTGTTAC AACACCACCA AATGGACTAA GACAAGTATT TATCCAAAGG AAATAAAAAT GTATGTCTGC ACAAAGATTA 002880 002881 GTACATGAAA AATGTCAGAG CAGCTGTATT CATAATAACC AAAAACTGGA AATATCCCAA GTATCCATCA ACAGGTGAAC 002960 002961 AGATAAATTG TGGTATATTC ATACAATGGC TTACTACTCA GTAATAAAAA GGAACAAAGT AGTGGTAAGT GCTACAACAT 003040 003041 GAATACAACT CGAAAACTTT ATACTGAAAG ATGCCAGATA GAAGCATACA TAGCATATTA TTACATTTAA ATGAAGTTCT 003120 003121 AGAACAAACA AAACTATTTT GATTGGCTGG CCTTGAAAAG GTGACATTTG AGCAAGATCT GGATGTCAAG AGGGAGCCAG 003200 003201 CTATGGCAAG ATCGATGGGG AGCATTCCAG GCAAACAGCA CTACAGGAAC AGGATCAGGA AAGAGCTTGT TGAGCTTGGA 003280 003281 AACAGTCAGC AGGCCACAGT GACTGCGTGA AGTAGGTGGG GCAGAGAATG GTGGGGGACA GGGTGGAGAG GTGGATGGGA 003360 003361 GCCAGATCAT GCCAAGCCTT ATCAGCCCTG ATAAAGTTGT GGAATTTGAT ATGAATAAAA TGCAAATCCC TCATAGTTTT 003440 003441 GTGGGGCGGA AACACATAAG CAAATAAAGG CAATTCAGGG TCATGGGTGA TATATTTGGG GAGTGTACAG GGAAAGAGGA 003520 003521 GTAGTAGGCA TTAGGGACAT CTGAGAAGGC TTCCCAGAGG AGGTGACATT TCGGCTGAGA CTGGAAGAGT AGTAGAAGAG 003600 003601 GGGAAAGGTC ATTCTGGTGG AGGGTACTGT GCCTACAGAA GCTCAGAGAC ATGTAGCCTC AGGGAACATT CAGAGACCTC 003680 003681 AGCATAATAT AAGCCTAGTT GGAGTGTTCC CAACTAGGAG AGGGAGTGGC AGGAGATCTG AGGCTGAAGA GAGTGGCTTT 003760 003761 GAATGCTTTG TCAGACTTGA TCCTGCAGGG AATGGGAAAC CCCTGCAGAA TTTATAGTCA GGAAGTATCA GGGCCAGGTT 003840 003841 GACACTTCAG ATCAAGATCT CCAGATTGGC AGGCAGAGAG CAAGGCCACT GGTTCTAGTG TGAGATAATG GGGGACTGGG 003920 003921 CCTGGGACTG AGCAGGGGTG GGCGGGGCAG GGAGTAGAGC CAAACTCTGC TAAGCAGTGA CTAGGACTCT CCCGATTGAG 004000 004001 GCAAAGCTCT CCAGATCTTG AGGCCCCAGA GGGCCATAAA TACTTTCATG CGCATCTGTT CTCTTGGAGG GCTTGTCACA 004080 004081 CCTGAAGGCT CCTAGGCCCT GGCTCCCAGG GATTCAGAAG TGATAGGTCT AGGATGAAGC CCAGGAATCT GCATACATAA 004160 004161 AAAGTGACAC TCTCCACTCT GATGCGGGTG GACTCCATAC CTTCCAGGCT GGGGAGGGGA GGGGGCAGGA CAAGCACACT 004240 004241 CTCATCTGGA CTGTGGCTGA AGCAGCTCAG AGAATCGAAG GTAGCATCTA AAATAAGGAC CTGGATGCAC TGGGAACAAA 004320 004321 GGTAGTGTGT GTCTCCACTG CTGCAGCTAA AGAATTGCAG TGGAGTGGCC CTGGTCATCA TGCAGAAAAA TGACTCCTGA 004400 004401 TCACCAGTCC AAGGAGCCAC AGAAATAAGA GATGGGGCCA TGATCGGACC ATAGATCTGT CTTTTAACCT GTACCTTCTC 004480 004481 CTAGGGTGCA GACAGGGAGG CAGGAAGGGG ATTACTGGAG GCTGCAGTAA ACTAGAGAAC AAGCTCTGTG CAAAGGAAGC 004560 004561 CTCTCTTACC ATTCAGCATC TCAATGAATT AACCCTCACA ACAGCTCTAT GTGGTTGGTC CTATTATTAT TCCCATTTCT 004640 004641 TAGATGGGGA AACTGAGACT CAAAAAGGTG GAGTAAGTAG TGCTGGGTCC CAAGGTGAGG ACATAGGGGA ACCATGGCTG 004720 004721 GAACACAGGC CTCTGGACAC TCCGAATCAT AGCATTGCCC TGTGTCCCCT TCAGTGGGAA AAGTCACTTC ATCTCTTAAT 004800 004801 CTTAAATGAT CTTCCAAGCA AGAGGAGGGG AGAGGAGGAG TATAAGCTTT CTTTGTCCCA TCTTTTTCAG AAGGTATCTA 004880 004881 AGTCCTTCCT GTGTGTGTCT TCCAAAGATA CAGTACCAGG ACCTAGAGAG GCTGAGATTT AGAGCCTCAT GGTGCAAACT 004960 004961 CAATTGTAGG GTCCTAGCCA GGACTACTTG CCTGTATCTT CTAAGAATCT CACAACAGTG CCACATGCCT CAGCTTTATC 005040 005041 CAAGCAACAG AAGGAGGTGG TGGAGGTGGT GATGGCAGCA GCAGCAGCAG CAGCAGCAGT GGCAGCAAAT CTGTCCCCAG 005120 005121 TGCACTACAG TACTGTTTTG CTATGATGAA ATACACATGG CATATGGCTA CAAAGTTACT ATCTTGAGAG TGGATAGAAA 005200 005201 TGGGATTTTT CATGTGCCAG ATTTCACTTC CCTTTCTGAA ACAATTCTTG TAGTAAACAG AGGTTTTCTG ATCTTGCTAA 005280 005281 GATCAAGAGG ATGGGAATTC CTTTACACTT TTAAAGTAAG ACCACTGTCT TGTAGAGTTT CAGTCTGTTG ATGGTGCAAA 005360 005361 TGTTTTTTAA ACATGGACGC TATTCTGTGT TCCTCCCTCT TTCCTTCCAA AGGCTACGAC ACAAAGAGGA GCTGCTAACA 005440 005441 CCAGATGACC AACTCCTTTC CAGTTACGGA CCATCCCGGT GATGAGACCT CCATATGTTG TCTGATGGCC GCAGTTCCTT 005520 005521 GGCAAAGAAG CGTGGCCTGT CAGCCCAGCA TCAGATGGTT CCATGCCAAC CTCCTCCATG GCTAGGTGTT GGAGCGCCCC 005600 005601 AGCTGCTGCC TCCCTGGTAG CTTTCATTAA AGGACTTTGC TTTTTTGGAA TGGAAACCCA CACTGCTGTT GTGAAGACAC 005680 005681 CTGATGAAAC TCCAGCAACT TCTACATCTG GCCTGCTGCT TAGTCCTGGG ACCTGAGGTC AAAATCTTAG AAAAGAGCCA 005760 005761 TGTGAGATGC ATTCCCTGGC CTCATCTCTG TTCTTGGATG CTGTCAGCAA CACTCCTTGA GTTTTTACCC ACATAATAAC 005840 005841 ACTTTCCTCA GCATGGATGT GGAGGTGGGG GTGAGGAATG TTCTATTTTT CCTTCGATGG TTACGCCCTC ACCCTACCAA 005920 005921 CTCAGTAAAA GGGGAGTGGT CAGGGAGCGT A |
Predicted Small Protein
Name | ENST00000607850.1_smProtein_4805:5071 |
Length | 89 |
Molecular weight | 10875.819 |
Aromaticity | 0.147727272727 |
Instability index | 92.8920454545 |
Isoelectric point | 10.8104858398 |
Runs | 13 |
Runs residual | 0.0163636363636 |
Runs probability | 0.0360360360361 |
Amino acid sequence | MIFQARGGERRSISFLCPIFFRRYLSPSCVCLPKIQYQDLERLRFRASWCKLNCRVLART TCLYLLRISQQCHMPQLYPSNRRRWWRW |
Secondary structure | LEEELLLLLLLEEEELLHHHHHHLLLLLLEELLLLLHHHHHHHHHHHHHHHLLHHHHHHH HHHHHHHHHHHHLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |