ENST00000606772.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000606772.1

Source

Gencode19

Same with

lnc-AMFR-1:1,NONHSAT142669

Classification

intronic(AS)

Length

1639 nt

Genomic location

chr16-:56385798..56387436

Exon number

1

Exons

56385798..56387436

Genome context

Sequence
000001 CCTCCCGTCC CACCCCTGCT GCTTGTTTTG TGCCCTCACA GGTTTGCACT CCATGGGGCC ACTGCACTGG TGACCATCTG 000080
000081 TCATCCATGA TACCTGAATT CAAACTGGAT TCCTCTGAAG GCCCTGGAGA ACTTGTTTCT CAGGTTCCAA CTGCCCTTCG 000160
000161 CTGGGGCATC TAGTGCTTGC ACTCCACAGC AGTGAGACTG GCCACTCCCA AGTCAGGCCC CAGTGGGACA CTGGGCAAGA 000240
000241 AAGAGCCGTA GGGTTGGGCC TGTCTCTGAG GGTAGCCCTG GCCTGAGGGG GCCTACTGGA CTCCATCGTT GTGGCTGGGA 000320
000321 GAGGTCAGGA GTGGCTGCCA GAGTGGGCTA CAGCCTGGCT CTGCCCAAGG GCCACCTGGG GCTGGCCTTT CAGGGCTTGT 000400
000401 CCTGTGCCCT CCTGCCCTCA CTCCATCCTG CAGAGGGCAC CTTCTCCGTG GCCAGTTCCC CCTCCCCTAG TTTCCATCCT 000480
000481 CTGAATAATA CCAATGGCAG CCACAGCCAG CACTTCAGTA GACCTGGCAC CAAGCAGCTG TCCTTCCAGT CACCCTTGGG 000560
000561 GTGGGCATGA TTACCCATTG TGTTGACCAG ATTAGAATGA GGCACAGATG ACTGAGCAAC TTGCTGAGCT GCAGGTGGTC 000640
000641 TGGCTCCAGA GGCTACCTGG GCTCTCTGCC CTATTGGGAC TTTGCTGGAG AGCCTCGAGT GCAGGGCACA GTTCCTGGCC 000720
000721 CCACCTCCTG CTCTGCACCT TGGGAAGGGC AAGAACCTTG CAAATTCACA TTAGCACGGA CCATCAGTGA GGACACGGTT 000800
000801 TGTGCTCAGA ACAAGCTGAC AGCCCTTCTT CACACACTGC TCCCAGCTGT GGGGAAGGGT GGGGAGACCA GCATCGACCT 000880
000881 ATGCTGGATG TAGGCACCCT GTGGCTGAGC TTGGGGACCC GTGTGGCCCT GAGACTGAGC CCATGCCCAA AGCCTTACTC 000960
000961 CAGGGCTGTC AGAACATGGG TTCCTGGCCG AGCCAACCTG TGCCCTGACC TGGCGGATGA CAGGACACCT CCTCCTCCAT 001040
001041 GGCAGGGTGC TGGCCCTGTG CACTCTGTAG TCTGCAAAGG CAACTCCTAC CCCAGGGACC CCTAGAAGCT TCCCAGCCCC 001120
001121 TAGAGGGACC AGGGCTGGGC TCTGGCATCC CATCAGTGCT GCTTTTAGGC ATTAGCAGTA GCCCAGAGTT GGCCCATTCC 001200
001201 ACGGAAGCCA CCATCCCTCA TCCATCCATT TGGAAAGAGC GTCATTGAGC CGGGTGGGGG GGAAGGTCTG TGACACATTC 001280
001281 CCCTGAGAGC AAGAAGAAAG CCCCAGAGAA GGCAGAAGAA AGGGAGGCAG TGATACAGGA GGCTTGCAGA TAGCTGGAGT 001360
001361 GGTTGGATTT GGGGCAAAGA CCAGGGACGA AGGAAGAAGG GGAGAGAGGA GGCGCAATGG GGCTGGGGTT GGGGAGGGAG 001440
001441 GGCAGGCACG ATGTGGGATG GGTGGAGTGG TCTGGCTGGG CGGCTGCACA GAGATGAAGC ATGTTCCGGG CACCAAAGCA 001520
001521 GGGAGCAGGG AAAGCAGGTG GGGCCAAGAG GCAGTCCAGG CCCTGTTCAC AGGCCACGTG TCCACTTTTC GGTTTCATGC 001600
001601 AAAGGTGCTG TGGGGCTCTG GGCAGGGGTG AGGGGAGGC
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Predicted Small Protein

Name ENST00000606772.1_smProtein_1457:1630
Length 58
Molecular weight 6115.8975
Aromaticity 0.105263157895
Instability index 50.5736842105
Isoelectric point 9.77923583984
Runs 9
Runs residual 0.00394736842105
Runs probability 0.0338573867985
Amino acid sequence MGGVVWLGGCTEMKHVPGTKAGSRESRWGQEAVQALFTGHVSTFRFHAKVLWGSGQG
Secondary structure LLLEEEELLLEEELLLLLLLLLLLLLLLHHHHHHHHHLLLLEEEEEEEEEEEELLLL
PRMN -
PiMo -