ENST00000606772.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000606772.1 |
Source |
Gencode19 |
Same with |
lnc-AMFR-1:1,NONHSAT142669 |
Classification |
intronic(AS) |
Length |
1639 nt |
Genomic location |
chr16-:56385798..56387436 |
Exon number |
1 |
Exons |
56385798..56387436 |
Genome context |
|
Sequence |
000001 CCTCCCGTCC CACCCCTGCT GCTTGTTTTG TGCCCTCACA GGTTTGCACT CCATGGGGCC ACTGCACTGG TGACCATCTG 000080
000081 TCATCCATGA TACCTGAATT CAAACTGGAT TCCTCTGAAG GCCCTGGAGA ACTTGTTTCT CAGGTTCCAA CTGCCCTTCG 000160 000161 CTGGGGCATC TAGTGCTTGC ACTCCACAGC AGTGAGACTG GCCACTCCCA AGTCAGGCCC CAGTGGGACA CTGGGCAAGA 000240 000241 AAGAGCCGTA GGGTTGGGCC TGTCTCTGAG GGTAGCCCTG GCCTGAGGGG GCCTACTGGA CTCCATCGTT GTGGCTGGGA 000320 000321 GAGGTCAGGA GTGGCTGCCA GAGTGGGCTA CAGCCTGGCT CTGCCCAAGG GCCACCTGGG GCTGGCCTTT CAGGGCTTGT 000400 000401 CCTGTGCCCT CCTGCCCTCA CTCCATCCTG CAGAGGGCAC CTTCTCCGTG GCCAGTTCCC CCTCCCCTAG TTTCCATCCT 000480 000481 CTGAATAATA CCAATGGCAG CCACAGCCAG CACTTCAGTA GACCTGGCAC CAAGCAGCTG TCCTTCCAGT CACCCTTGGG 000560 000561 GTGGGCATGA TTACCCATTG TGTTGACCAG ATTAGAATGA GGCACAGATG ACTGAGCAAC TTGCTGAGCT GCAGGTGGTC 000640 000641 TGGCTCCAGA GGCTACCTGG GCTCTCTGCC CTATTGGGAC TTTGCTGGAG AGCCTCGAGT GCAGGGCACA GTTCCTGGCC 000720 000721 CCACCTCCTG CTCTGCACCT TGGGAAGGGC AAGAACCTTG CAAATTCACA TTAGCACGGA CCATCAGTGA GGACACGGTT 000800 000801 TGTGCTCAGA ACAAGCTGAC AGCCCTTCTT CACACACTGC TCCCAGCTGT GGGGAAGGGT GGGGAGACCA GCATCGACCT 000880 000881 ATGCTGGATG TAGGCACCCT GTGGCTGAGC TTGGGGACCC GTGTGGCCCT GAGACTGAGC CCATGCCCAA AGCCTTACTC 000960 000961 CAGGGCTGTC AGAACATGGG TTCCTGGCCG AGCCAACCTG TGCCCTGACC TGGCGGATGA CAGGACACCT CCTCCTCCAT 001040 001041 GGCAGGGTGC TGGCCCTGTG CACTCTGTAG TCTGCAAAGG CAACTCCTAC CCCAGGGACC CCTAGAAGCT TCCCAGCCCC 001120 001121 TAGAGGGACC AGGGCTGGGC TCTGGCATCC CATCAGTGCT GCTTTTAGGC ATTAGCAGTA GCCCAGAGTT GGCCCATTCC 001200 001201 ACGGAAGCCA CCATCCCTCA TCCATCCATT TGGAAAGAGC GTCATTGAGC CGGGTGGGGG GGAAGGTCTG TGACACATTC 001280 001281 CCCTGAGAGC AAGAAGAAAG CCCCAGAGAA GGCAGAAGAA AGGGAGGCAG TGATACAGGA GGCTTGCAGA TAGCTGGAGT 001360 001361 GGTTGGATTT GGGGCAAAGA CCAGGGACGA AGGAAGAAGG GGAGAGAGGA GGCGCAATGG GGCTGGGGTT GGGGAGGGAG 001440 001441 GGCAGGCACG ATGTGGGATG GGTGGAGTGG TCTGGCTGGG CGGCTGCACA GAGATGAAGC ATGTTCCGGG CACCAAAGCA 001520 001521 GGGAGCAGGG AAAGCAGGTG GGGCCAAGAG GCAGTCCAGG CCCTGTTCAC AGGCCACGTG TCCACTTTTC GGTTTCATGC 001600 001601 AAAGGTGCTG TGGGGCTCTG GGCAGGGGTG AGGGGAGGC |
Predicted Small Protein
Name | ENST00000606772.1_smProtein_1457:1630 |
Length | 58 |
Molecular weight | 6115.8975 |
Aromaticity | 0.105263157895 |
Instability index | 50.5736842105 |
Isoelectric point | 9.77923583984 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.0338573867985 |
Amino acid sequence | MGGVVWLGGCTEMKHVPGTKAGSRESRWGQEAVQALFTGHVSTFRFHAKVLWGSGQG |
Secondary structure | LLLEEEELLLEEELLLLLLLLLLLLLLLHHHHHHHHHLLLLEEEEEEEEEEEELLLL |
PRMN | - |
PiMo | - |