ENST00000602319.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000602319.1 |
Source |
Gencode19 |
Same with |
NONHSAT108632 |
Classification |
intergenic |
Length |
3342 nt |
Genomic location |
chr6-:30268551..30271892 |
Exon number |
1 |
Exons |
30268551..30271892 |
Genome context |
|
Sequence |
000001 GCCATGGCTC CTGAAAGAAA TAAAAGATGA TCATCTTTCT AAAAAGTCTT AAGTCTGAAT TATTAGTAAC TTAACTGGAG 000080
000081 AATCTCACTT TTCCTACTCT CGTATTTTAA CCACAGTTGC TCTAACACAG ACCTTTGAGG ATCTTTTCAT GACTTCATTC 000160 000161 ACAAATACCT ATTTATGCTG TACAGATGCT ACTAGGAAGG AAATAGGGAT GTCTGTTTTG ACTGTGGAAC TTAACTTGGT 000240 000241 CTCGTCTCTT CGTGCATGCA ACCCTGTCCT TGGGATAGCT TTCTTGAGCA TATCTACTTA TGTTCAAGAG GTAAATTGTC 000320 000321 CTGAAACCCC CATTGCTATA AGTATTTATT TTATTACTCA TAATACTTAA TGCTCCTAAA GTTGGGGTAT TTTTTTTTTT 000400 000401 GGATACCTAA ACTTCATTGA GATACTTTGA ACTATTTATA GAGAAAACGG AACCTTCTAA TACCTGGCTT CTATTTCTTA 000480 000481 AAATGTTATG ATCATACATG GCTTAGGGCT TTATGGCCAA ATAACTTCAC TGAACCCAGG AAAAAGAATA GATCCATCTG 000560 000561 AAACAGACCT GTAGCTTCCA GAGGCCTAAA TTTTCGGCTC CATTTGTATC CTTCATTTTC TGTGAGGTAA AGAAGTGGAA 000640 000641 GGAGACAAGC CTCAGCCCTT CCCCTGGCAC CTTTACTCTT CGCCCTTCCT CCTGGCATGG TGGAAAGTGC ACTGGAGGAG 000720 000721 GAGTGAAGGG CCCTAGGTTT GCATCCATAT TCTGCCACTT GCCAACCTTA ATGGCCCTTA CAATTGATTT ACCCTCATGA 000800 000801 AATTTGGAAT GATTTCTAAA GTCTTTCCTC GCCCTGAATG TTAACATTTT TTGATAGTCA GGACTTTCTG TAGCTTCACC 000880 000881 TTCCTTATTT AGTGTTATTT TTTTCTCAAG ACTGAACAGA GAGGGAAGCT GTCAAAGTGT GCTGGGCACA CACCCTGCAG 000960 000961 TGGGGCAATG GCCAATTCTA ATCTCAAGTC ATTAGGCTGC AGTAGCATGA CCACTGCTTC CTGTCTACCC TCAGAGGGTA 001040 001041 GAGACAGCTG AGCTCCTGTA GTTGGGGTCA GGCCCAGCCA CTCTGTGGGG ACAGTGATTA GTGTTGTGTC ACCAATTCAG 001120 001121 GGAAGGAGCC ACCTTGTCTT ATTTTCCCTC TTGAATTATC TTGATATGAC CCCATTATAA ATTTCCTTTT GTAAACCTCT 001200 001201 GTCTCCCAAT TTCTCCTTTT AGCTTACTTT CTATTGAAGT AGAGGAACAG AGTACAACTT CCATCCTCTT TCATCAGCCC 001280 001281 TGAGAGCAGA ACGCAAGCGC CGTTACTGGG AACTATATCC TTGGCTCCCT GGATGTGGCT ATTAACTTCT GGCCTGCCAC 001360 001361 TCTATCACAT ACACATATGG AGATGGTGTC ATCCATGTAC CTTACCCCGT ATTTACAACT TCTATCACCC AACAGTGCCA 001440 001441 ATGGCCCTGA TGGTCCCTCT GGGAGGGAGA GAAGAGTAAG CTGGAGTCAC CCCTTCCCTG TACTTCCCAC CTCGCCAGGC 001520 001521 CTGTTGGTGT TAGTGTCCCT TCTGATCTTG GCCTGACCCC TGTGCCCTGG GCACTGGGCT GCAGGTTGGA GAGGCAGCAT 001600 001601 GATGGAGTGG GGATAACACA TACTCCAAAA CCAAACAGAA GCCAGACCTG GGTTGGGTCC TGGCGAAACA GTCTAGAGGC 001680 001681 TTGGTGACCT TAACCTCCTA ATTAATCTTC CTAAGCATAA GTTTCCTTAT CATAAGTTAT GTATGATAAA ATTTTCCTTG 001760 001761 GATGCATTCA TTTTAGCATG ACTTGAAATT ATGTGTGAAG GAACCTGGCC CACGGAAGTT GCCCTGTAAA TTCAGATTCA 001840 001841 CTTTCCCTTG GACATATGGA TGACATTAGC TCATTACAGT TATGACCTCC CTAAAACTCC CAAATATTCT TTAAGTTCTT 001920 001921 CTCTTATTTT CCCTTTAGTT TGTAGTCATA TTTCTTAGTT CTTATATCAG TTGGGATTCC CACATCTTCT AGTTGGACAA 002000 002001 TATTGGAGAA GACACCACAT TTTAACTGAG TTCCAGTGAT ATGACAGGCT TTCAATTCTC TAATCTCACA GAAGTTAGAA 002080 002081 AAAAAGTAGA TAATCAAAAT CCACAGAAAA TATAGAAGAT TCCATTAACT CTGAGAATGA TTCTCAGGTA TCCTTAGGAC 002160 002161 CTCAAGAAAG CTGTTCTCTC CTGGGCCTGT AGAGAGTTCA AGTGCCAGGA ATCTACCACA AAGTAGCCGG GAGGTGCAGG 002240 002241 GCAGCAGGGG GCACAGTGAA GTGCTGAAGG GCTTCTCAGT CTTCTTTAAT TAGAGTGAGA AGAAAAGAGC ACCTCCTCAT 002320 002321 TTTAGAGTAC ATGGTGTGAA CTCACTCTCA GCTGCCAAGT GAGCTTCACC TTGGGCTGTT TTGCATGCTT TCTCCTAGTG 002400 002401 CTTTAAGCCA CCCTGAGATG TACAGACCAA TACTGGCCAT CACAAAAATA TACTCGAGTA CATAGACCAT TGACACTATA 002480 002481 AAGCAAGTAA ACAATGAAGT CTACATAACA GCCAAATAAC AACATGATGA TAGGATCAAA TCTGCACATA TCAATATTAA 002560 002561 CCTTGAATGT AAATGAGCTA AATGCCTCAA TTAATAGGCA GAGAGTGGCA AGTTGGACAG AGAAGCAAGA CCCAACTGTA 002640 002641 TGTCTTCAAG AGACCCATCT CATATGCAGG GACACCAATA GCCTCAAAGT AAGGGATGGA GAAAGATCTA TCAAGCAAAT 002720 002721 GGAAAACAAA AAACAGCACT CTCTGTCCAA CAAAAACAGA ATATACATTC TTTTCAGCTG CACATGGTAC ATACTCTTAA 002800 002801 AATCGACCAC AATTGCTTTA TTGGCCAGAA AGCAATTCTC AACAAATTCA AGAAACCTGA AATACCGGCC AGGTGTAGTG 002880 002881 GCTCACACCT GTAATCCCAA CACTTTGGAA GGCTGAGGTG GGCAAATCAC TTGAGGTCAA GAGTTTGAGA CCAGCCTGGC 002960 002961 CAACATGGCA AAAACCCATC TCTTCTAAAA AATATAAAAA TTAGCCGTGC ATGGTGGCAT GCGCCTGTAA TCCCAGCTAC 003040 003041 TTCGGAGGTT GAGTCACGAG AATTGCTTGA ACCTGGGAGG AGGAGGTTGC AGTGAGCTGA GATCACGCCA TTGCACTCCA 003120 003121 GTCTGGTTGA CAGAGTGAGA CTCATCTCAA AAAAACAAAA AAACCCTGAA ATACCAACCA CACTCTTGGA CCACAGTGCC 003200 003201 ATAAAAATAA ATACCAAGAA GATCTCTCAA AACCATATAA TTAAGTGGAA ATTAATCTAC TCCTGAATGA CTTGGGTAAA 003280 003281 CAAAGAGAAA TTAAGGCAGA AATCAAGAAA TTGTTTACAA CTAATGAAAA CAAAGATAAA AA |
Predicted Small Protein
Name | ENST00000602319.1_smProtein_1376:1555 |
Length | 60 |
Molecular weight | 6393.4119 |
Aromaticity | 0.0677966101695 |
Instability index | 62.5101694915 |
Isoelectric point | 6.51519775391 |
Runs | 10 |
Runs residual | 0.0250349867828 |
Runs probability | 0.053939233351 |
Amino acid sequence | MEMVSSMYLTPYLQLLSPNSANGPDGPSGRERRVSWSHPFPVLPTSPGLLVLVSLLILA |
Secondary structure | LEEEEEEELLHHHHHLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLHHHHHHHHHEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH |
PiMo | i?????????????????????????????????????????????????????????? |